2011

Pillet, L, de Vargas C, Pawlowski, J. 2011. Molecular identification of sequestered diatom chloroplasts and kleptoplastidy in Foraminifera. Protist; 162, 394-404. (Pubmed)

2010

Di-Poï N, Montoya-Burgos JI, Miller GH, Pourquié O, Milinkovitch MC, Duboule D. 2010. Changes in Hox genes’ structure and function during the evolution of the squamate body plan. Nature; 464, 99-103.

Heger, T Mitchell, E Todorov, M Golemansky, V Lara, E Leander, B Pawlowski, J. 2010. Molecular phylogeny of euglyphid testate amoebae (Cercozoa: Euglyphida) suggests transitions between marine supralittoral and freshwater/terrestrial environments are infrequent . Molecular phylogenetics and evolution; 55, 113-122. (Pubmed, pdf)

Montoya-Burgos JI, Foulon A, Bahechar I . 2010. Transcriptome screen for fast evolving genes by Inter-Specific Selective Hybridization (ISSH). BMC Genomics; 11, 126.

Nassonova E, Smirnov A, Fahrni J, Pawlowski J. 2010. Barcoding Amoebae: Comparison of SSU, ITS and COI Genes as Tools for Molecular Identification of Naked Lobose Amoebae. Protist; 161, 102-115.

Ojha M, Cattaneo A, Hugh S, Pawlowski J, Cox JA. 2010. Structure, Expression and Function of Allomyces arbuscula CDP II (metacaspase) Gene. Gene; 457, 25-34.

Pawlowski J, Lecroq B. 2010. Short rDNA Barcodes for Species Identification in Foraminifera. J Eukaryot Microbiol; 57, 197-205.

2009

Burki F, Inagaki Y, Bråte J, Archibald JM, Keeling PJ, Cavalier-Smith T, Sakaguchi M, Hashimoto T, Horak A, Kumar S, Klaveness D, Jakobsen KS, Pawlowski J, Shalchian-Tabrizi K . 2009. Large-scale phylogenomic analyses reveal that two enigmatic protist lineages, Telonemia and Centroheliozoa, are related to photosynthetic Chromalveolates. Genome Biol Evol; 2009, 231-238.

Cardoso YP, Montoya-Burgos JI . 2009. Unexpected diversity in the catfish Pseudancistrus brevispinis reveals dispersal routes in a Neotropical center of endemism: the Guyanas Region. Mol Ecol; 18, 947-964.

Di-Poi N, Montoya-Burgos JI, Duboule D . 2009. Atypical relaxation of structural constraints in Hox gene clusters of the green anole lizard. Genome Res; 19, 602-610.

Fiore-Donno AM, Haskins EF, Pawlowski J, Cavalier-Smith T. 2009. Semimorula liquescens is a modified echinostelid myxomycete (Mycetozoa). Mycologia; 101, 773-776.

Goodman SM, Maminirina CP, Weyeneth N, Bradman HM, Ruedi M, Appleton B. 2009. The use of molecular and morphological characters to resolve the taxonomic identity of cryptic species: the case of Miniopterus manavi (Chiroptera, Miniopteridae). Zoologica scripta; 38, 339 - 363.

Heger TJ, Mitchell EAD, Ledeganck P, Vincke S, Van de Vijver B, Beyens L. 2009. The curse of taxonomic uncertainty in biogeographical studies of free-living terrestrial protists: a case study of testate amoebae from Amsterdam Island. Journal of Biogeography; 36, 1551-1560. (pdf)

Kudryavtsev A, Pawlowski J, Hausmann K. 2009. Description and phylogenetic relationships of Spumochlamys perforata n. sp. and Spumochlamys bryora n. sp. (Amoebozoa, Arcellinida). J Eukaryot Microbio; 56, 495-503.

Kudryavtsev A, Wylezich C, Schlegel M, Walochnik J Michel R. 2009. Ultrastructure, SSU rRNA Gene Sequences and Phylogenetic Relationships of Flamella Schaeffer, 1926 (Amoebozoa), with Description of Three New Species. Protist; 160, 21-40.

Lecroq B, Gooday AJ, Pawlowski J. 2009. Global genetic homogeneity in the deep-sea foraminiferan Epistominella exigua (Rotaliida: Pseudoparrellidae). Zootaxa; 2096, 23-32.

Lecroq B, Gooday AJ, Tsuchiya M, Pawlowski J. 2009. A new genus of xenophyophores (Foraminifera) from Japan Trench: morphological description, molecular phylogeny and elemental analysis. Zool J Linn Soc; 156, 455 - 464.

Minge MA, Silberman JD, Orr RJS, Cavalier-Smith T, Shalchian-Tabrizi T, Burki F, Skjæveland A, Jakobsen KS. 2009. Evolutionary position of breviate amoebae and the primary eukaryote divergence. Proc. R. Soc. B; 276, 597-604.

Pawlowski J, Burki F. 2009. Untangling the phylogeny of amoeboid protists. J. Eukaryot. Microbiol.; 56, 16-25. (pdf)

Pawlowski J, Gooday AJ. 2009. Precambrian biota: protistan origin of trace fossils?. Curr Biol; 19, R28-R30.

Rothe N, Gooday AJ, Cedhagen T, Fahrni J, Hughes JA, Page A, Pearce RB, Pawlowski J. 2009. Three new species of deep-sea Gromia (Protista, Rhizaria) from the bathyal and abyssal Weddell Sea, Antarctica. Zool J Linn Soc; 157, 451–469.

Smirnov A, Nassonova E, Fahrni J, Pawlowski . 2009. Rhizamoeba neglecta n. sp. (Amoebozoa, Tubulinea) from the bottom sediments of freshwater Lake Leshevoe (Valamo Island, North-Western Russia), with notes on the phylogeny of the order Leptomyxida. Eur J Protistol; 45, 251-259.

Todorov M, Golemansky V, Mitchell EAD and Heger T. 2009. Morphology, Biometry, and Taxonomy of Freshwater and Marine Interstitial Cyphoderia (Cercozoa: Euglyphida). J Eukaryot Microbiol; 56, 279-289. (pdf)

Torrico JP, Hubert N, Desmarais E, Duponchelle F, Nuñez Rodriguez J, Montoya-Burgos J, Garcia Davila C, Carvajal-Vallejos FM, Grajales AA, Bonhomme F, Renno JF. 2009. Molecular phylogeny of the genus Pseudoplatystoma (Bleeker, 1862): biogeographic and evolutionary implications. Mol Phylogenet Evol; 51, 588-594.

2008

Burki F, Shalchian-Tabrizi K, Pawlowski J. 2008. Phylogenomics reveals a new megagroup including most photosynthetic eukaryotes. Biology Letters; 4, 366-369. (pdf)

Covain R, Dray S, Fisch-Muller S, Montoya-Burgos JI . 2008. Assessing phylogenetic dependence of morphological traits using co-inertia prior to investigate character evolution in Loricariinae catfishes. Mol Phylogenet Evol; 46, 986-1002.

Fiore-Donno AM, Meyer M, Baldauf SL, Pawlowski J. 2008. Evolution of dark-spored Myxomycetes (slime-molds): Molecules versus morphology. Mol. phylogenet. Evol.; 46, 878-889.

Pawlowski J Holzmann M . 2008. Diversity and geographic distribution of benthic foraminifera: a molecular perspective. Biodivers Conserv; 17, 317-328.

Pawlowski J, Majewski W, Longet D, Guiard J, Cedhagen T, Gooday AJ, Korsun S, Habura AA, Bowser SS. 2008. Genetic differentiation between Arctic and Antarctic monothalamous foraminiferans . Polar Biology; 31, 1205-1216.

Schweizer M, Pawlowski J, Kouwenhoven TJ, Guiard J, van der Zwaan B. 2008. Molecular phylogeny of Rotaliida (Foraminifera) based on complete small subunit rDNA sequences. Marine Micropaleontology; 66, 233-246.

Sinniger F, Reimer JD, Pawlowski J. 2008. Potential of DNA sequences to identify zoanthids (cnidaria: zoantharia). Zoolog Sci; 25, 1253-1260.

2007

Brandt A, Gooday AJ, Brandão SN, Brix S, Brökeland W, Cedhagen T, Choudhury M, Cornelius N, Danis B, De Mesel I, Diaz RJ, Gillan DC, Ebbe B, Howe JA, Janussen D, Kaiser S, Linse K, Malyutina M, Pawlowski J, Raupach M, Vanreusel A. 2007. First insights into the biodiversity and biogeography of the Southern Ocean deep sea. Nature; 447, 307-312. (Pubmed)

Burki F, Shalchian-Tabrizi K, Minge M, Skjæveland A, Nikolaev SI, Jakobsen KS, Pawlowski J. 2007. Phylogenomics reshuffles the eukaryotic supergroups. PLoS ONE; 2, e790. (Pubmed, pdf)

Longet D, Pawlowski J. 2007. Higher-level phylogeny of Foraminifera inferred from the RNA polymerase II (RPB1) gene. European Journal of Protistology; 43, 171-177. (Pubmed)

Nikolaev SI, Montoya-Burgos JI, Popadin K, Parand L, Margulies EH, Antonarakis SE . 2007. Life-history traits drive the evolutionary rates of mammalian coding and noncoding genomic elements. Proc Natl Acad Sci USA; 51, 20443-20448.

Pawlowski J, Fahrni J, Lecroq B, Longet D, Cornelius N, Excoffier L, Cedhagen T, Gooday AJ. 2007. Bipolar gene flow in deep-sea benthic foraminifera. Mol Ecol; 16, 4089-4096. (pdf)

Pochon X, Garcia-Cuetos L, Baker AC, Castella E, Pawlowski J. 2007. One-year survey of a single Micronesian reef reveals extraordinarily rich diversity of Symbiodinium types in soritid foraminifera. Coral Reefs; 26, 867-882. (pdf)

Reimer JD, Sinniger F, Fujiwara Y, Hirano S, Maruyama T . 2007. Morphological and Molecular Characterization of Abyssoanthus nankaiensis, a New Family, New Genus and New Species of Deep-Sea Zoanthid (Anthozoa: Hexacorallia: Zoantharia) from a Northwest Pacific Methane Cold Seep. Invertebrate Systematics; 21, 255-262.

Schmitz P, Cibois A, Landry B. 2007. Molecular phylogeny and dating of an insular endemic moth radiation inferred from mitochondrial and nuclear genes: The genus Galagete (Lepidoptera: Autostichidae) of the Galapagos Islands. Molecular Phylogenetics and Evolution; 45, 180-192. (pdf)

Schmitz P, Landry B. 2007. Immature stages of Galagete protozona (Lepidoptera: Gelechioidea: Autostichidae) from the Galapagos Islands: description and notes on biology. The Canadian Entomologist; 139, 201-208. (pdf)

Schmitz P, Landry B. 2007. Two new species of Chionodes Hübner from Ecuador, with a summary of known Galapagos records of Gelechiidae (Lepidoptera). Revue suisse de Zoologie; 114, 175-184. (pdf)

Schmitz P, Steiner F, Kestenholz M. 2007. Analyse des données suisses de reprises du Bruant des roseaux Emberiza schoeniclus . Nos Oiseaux; 54, 131-138. (pdf)

Sinniger F, Chevaldonne P, Pawlowski J. 2007. Mitochondrial Genome of Savalia savaglia (Cnidaria, Hexacorallia) and Early Metazoan Phylogeny. Journal of Molecular Evolution; 64, 196-203. (Pubmed, pdf)

Stadelmann B, Lin L-K, Kunz TH, Ruedi M. 2007. Molecular phylogeny of New World Myotis (Chiroptera, Vespertilionidae) inferred from mitochondrial and nuclear DNA genes. Molecular Phylogenetics and Evolution; 43, 32-48. (pdf)

The ENCODE Project Consortium. 2007. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature; 447, 799-817. (Pubmed)

2006

Aranda Da Silva A, Pawlowski J, Gooday A. 2006. High diversity of deep-sea Gromia from the Arabian Sea revealed by small subunit rDNA sequence analysis. Marine Biology; 148, 769-777. (pdf)

Berney C, Pawlowski J. 2006. A molecular time-scale for eukaryote evolution recalibrated with the continuous microfossil record. Proceedings of the Royal Society B: Biological Sciences; 273, 1867-72. (Pubmed)

Burki F, Nikolaev SI, Bolivar I, Guiard J, Pawlowski J. 2006. Analysis of expressed sequence tags from a naked foraminiferan Reticulomyxa filosa. Genome; 49, 882-887. (Pubmed, pdf)

Burki F, Pawlowski J. 2006. Monophyly of Rhizaria and multigene phylogeny of unicellular bikonts. Molecular Biology and Evolution; 23, 1922-1930. (Pubmed, pdf)

Flakowski J, Bolivar I, Fahrni J, Pawlowski J . 2006. Tempo and mode of spliceosomal intron evolution in actin of foraminifera. Journal of Molecular Evolution; 63, 30-41. (Pubmed)

Ibánez C, García-Mudarra JL, Ruedi M, Stadelmann B, Juste J. 2006. The Iberian contribution to cryptic diversity in European bats. Acta Chiropterologica; 8, 277-297. (pdf)

Jones G, Parsons S, Zhang S, Stadelmann B, Benda P, Ruedi M. 2006. Echolocation calls, wing shape, diet and phylogenetic diagnosis of the endemic Chinese bat Myotis pequinius . Acta Chiropterologica; 8, 451-463. (pdf)

Landry B, Adamski D, Schmitz P, Parent CE, Roque-Albelo L. 2006. Taygete sphecophila (Meyrick) (Lepidoptera; Autostichidae): redescription of the adult, description of the larva and pupa, and impact on Polistes wasps (Hymenoptera; Vespidae) nests in the Galapagos Islands. Revue suisse de Zoologie; 113, 307-323. (pdf)

Nikolaev SI, Petrov NB, Mylnikov AP, Berney C, Fahrni J, Pawlowski J. 2006. Phylogenetic position of Multicilia marina and evolution of Amoebozoa. International Journal of Systematics and Evolutionary Microbiology; 56, 1449-1458. (Pubmed)

Pochon X, Montoya-Burgos JI, Stadelmann B, Pawlowski J. 2006. Molecular phylogeny, evolutionary rates and divergence timing of the symbiotic dinoflagellate genus Symbiodinium. Molecular Phylogenetics and Evolution; 38, 20-30. (Pubmed, pdf)

Pochon X, Pawlowski J. 2006. Evolution of the soritids-Symbiodinium symbiosis. Symbiosis; 42, 77-88. (pdf)

Schmitz P, Steiner F. 2006. Autumn migration of Reed Buntings Emberiza schoeniclus in Switzerland. Ringing and Migration; 23, 33-38. (pdf)

Sinniger F. 2006. Zoantharia of New Caledonia. In: Compendium of marine species from New Caledonia. C. Payri and B. Richier De Forges eds. IRD editions. Documents scientifiques et techniques II; 7, 127-128.

2005

Bass D, Moreira D, Lopez-Garcia P, Pzolet S, Chao EE, Herden S, Pawlowski J, Cavalier-Smith T. 2005. Polyubiquitin insertions and the phylogeny of Cercozoa and Rhizaria. Protist; 156, 149-161. (Pubmed, pdf)

Belbahri L, Calmin G, Pawlowski J, Lefort F. 2005. Phylogenetic analysis and real time PCR detection of a presumbably undescribed Peronospora species on sweet basil and sage. Mycological Research; 109, 1276-1287. (Pubmed)

Fiore-Donno A-M, Berney C, Pawlowski J, Baldauf SL. 2005. Higher-order phylogeny of plasmodial slime molds (Myxogastria) based on elongation factor 1A and small subunit rRNA gene sequences. The Journal of Eukaryotic Microbiology; 52, 201-210. (Pubmed)

Flakowski J, Bolivar I, Fahrni J, Pawlowski J. 2005. Actin phylogeny of Foraminifera. Journal of Foraminiferal Research; 35, 93-102. (pdf)

Garcia-Cuetos L, Pochon X, Pawlowski J. 2005. Molecular evidence for host-symbiont specificity in soritid foraminifera. Protist; 156, 399-412. (Pubmed, pdf)

Gooday AJ, Bowser SS, Cedhagen T, Cornelius N, Hald M, Korsun S, Pawlowski J. 2005. Monothalamous foraminiferans and gromiids (Protista) from western Svalbard: a preliminary survey. Marine Biology Research; 1, 290-312. (pdf)

Kudryavtsev A, Bernhard D, Schlegel M, Chao EEY, Cavalier-Smith T. 2005. 18S Ribosomal RNA Gene Sequences of Cochliopodium (Himatismenida) and the Phylogeny of Amoebozoa. Protist; 156, 215-224.

Majewski W, Pawlowski J, Zajaczkowski M. 2005. Monothalamous, soft-walled benthic foraminifera from West Spitsbergen fjords, Svalbard: a brief overview. Polish Polar Research; 26, 269-285. (pdf)

Nikolaev SI, Mitchell EAD, Petrov NB, Berney C, Fahrni J, Pawlowski J. 2005. The testate lobose amoebae (order Arcellinida Kent, 1880) finally find their home within Amoebozoa. Protist; 156, 191-202. (Pubmed, pdf)

Pawlowski J, Fahrni JF, Guiard J, Konlan K, Hardecker J, Habura A, Bowser SS. 2005. Allogromiid foraminifera and gromiids from under the Ross Ice Shelf: morphological and molecular diversity. Polar Biology; 28, 514-522. (pdf)

Schmitz P, Landry B. 2005. Two new taxa of Galagete (Lepidoptera, Autostichidae) from the Galápagos Islands, Ecuador. Revue suisse de Zoologie; 112, 511-517. (pdf)

Schweizer M, Pawlowski J, Duijnstee IAP, Kouwenhoven TJ, van der Zwaan GJ. 2005. Molecular phylogeny of the foraminiferan genus Uvigerina based on ribosomal DNA sequences. Marine Micropalentology; 57, 51-67. (pdf)

Sinniger F, Montoya-Burgos JL, Chevaldonné P, Pawlowski J. 2005. Phylogeny of the order Zoantharia (Anthozoa, Hexacorallia) based on the mitochondrial ribosomal genes. Marine Biology; 147, 1121-1128. (pdf)

Smirnov A, Nassonova E, Berney C, Fahrni J, Bolivar I, Pawlowski J. 2005. Molecular phylogeny and classification of the lobose amoebae. Protist; 156, 129-142. (Pubmed, pdf)

2004

Berney C, Fahrni J, Pawlowski J. 2004. How many novel eukaryotic "Kingdoms"? Pitfalls and limitations of environmental DNA surveys. BMC Biology; 2, 13. (pdf)

Gooday AJ, Holzmann M, Guiard J, Cornelius N, Pawlowski J. 2004. A new monothalamous foraminiferan from 100-6300 m water depth in the Weddell Sea: morphological and molecular characterization. Deep-Sea Research II; 51, 1603-1616. (pdf)

Gooday AJ, Pawlowski J. 2004. A new soft-walled monothalamous foraminiferan genus from the deep Weddell Sea. Journal of the Marine Biological Association of the United Kingdom; 84, 919-924.

Habura A, Pawlowski J, Hanes SD, Bowser SS. 2004. Unexpected foraminiferal diversity revealed by small-subunit rRNA analysis of Antarctic sediment. Journal of Eukaryotic Microbiology; 51, 173-179. (pdf)

Hayward BW, Holzmann M, Grenfell HR, Pawlowski J. 2004. Morphological distinction of molecular types in Ammonia - towards a taxonomic revision of the world's most common and misidentified foraminiferal genus. Marine Micropalentology; 50, 237-271. (pdf)

Longet D, Burki F, Flakowski J, Berney C, Polet S, Pawlowski J. 2004. Multigene evidence for close evolutionary relations between Gromia and Foraminifera. Acta Protozoologica; 43, 303-311.

Nikolaev SI, Berney C, Fahrni JF, Bolivar I, Polet S, Mylnikov AP, Aleshin VV, Petrov NB, Pawlowski J. 2004. The twilight of Heliozoa and rise of Rhizaria, a new supergroup of amoeboid eukaryotes. Proceedings of the National Academy of Sciences; 101, 8066-8071. (pdf)

Pochon X, LaJeunesse TC, Pawlowski J. 2004. Biogeographic partitioning and host specialization among foraminiferan dinoflagellates symbionts (Symbiodinium, Dinophyta). Marine Biology; 146, 17-27. (pdf)

Polet S, Berney C, Fahrni J, Pawlowski J. 2004. Small subunit ribosomal RNA sequences of Phaeodarea challenge the monophyly of Haeckel's Radiolaria. Protist; 155, 53-63. (pdf)

Sabbatini A, Pawlowski J, Gooday AJ, Piraino S, Bowser SS, Morigi C, Negri A. 2004. Vellaria Antarctica n. sp., a new small monothalamous foraminifer from Terra Nova Bay, Antarctica. Antarctic Science; 16, 307-312. (pdf)

Stadelmann B, Herrera LG, Arroyo-Cabrales J, Flores-Martínez JJ, May BP, Ruedi M. 2004. Molecular Systematics of the fishing bat Myotis (Pizonyx) vivesi. Journal of Mammalogy; 85, 133-139. (pdf)

Stadelmann B, Jacobs DS, Schoeman C, Ruedi M. 2004. Phylogeny of African Myotis bats (Chiroptera, Vespertilionidae) inferred from Cytochrome b sequences. Acta Chiropterologica; 6, 177-192. (pdf)

2003

Archibald JM, Longet D, Pawlowski J, Keeling PJ. 2003. A novel polyubiquitin structure in Cercozoa and Foraminifera: evidence for a new eukaryotic supergroup. Molecular Biology and Evolution; 20, 62-66. (Pubmed, pdf)

Berney C, Pawlowski J. 2003. Revised small subunit rRNA analysis provides further evidence that Foraminifera are related to Cercozoa. Journal of Molecular Evolution; 57, S120-127. (Pubmed)

Fahrni JF, Bolivar I, Berney C, Nassonova E, Smirnov A, Pawlowski J. 2003. Phylogeny of lobose amoebae based on actin and small-subunit ribosomal RNA genes. Molecular Biology and Evolution; 20, 1881-1886. (Pubmed, pdf)

Holzmann M, Habura A, Giles H, Bowser SS Pawlowski J. 2003. Freshwater foraminiferans revealed by analysis of environmental DNA samples. The Journal of Eukaryotic Microbiology; 50, 135-139. (Pubmed, pdf)

Holzmann M, Hohenegger J, Pawlowski J. 2003. Molecular data reveal parallel evolution in nummulitid Foraminifera. Journal of Foraminiferal Research; 33, 8-15.

Lee JJ, Olea R, Cevasco M, Pochon X, Correia M, Shpigel M, Pawlowski J. 2003. A marine dinoflagellate, Amphidium eilatiensis n.sp., from the benthos of a mariculture sedimentation pond in Eilat, Israel. The Journal of Eukaryotic Microbiology; 50, 439-448. (Pubmed)

Longet D, Archibald JM, Keeling PJ, Pawlowski J. 2003. Foraminifera and Cercozoa share a common origin according to RNA polymerase II phylogenies. International Journal of Systematics and Evolutionary Microbiology; 53, 1735-1739. (Pubmed, pdf)

Montoya-Burgos JI. 2003. Historical biogeography of the catfish genus Hypostomus (Silurifomes: Loricariidae), with implication on the diversification of Neotropical ichtyofauna. Molecular Ecology; 12, 1855-1867. (Pubmed)

Montoya-Burgos JI, Boursot P, Galtier N. 2003. Recombination explains isochores in mammalian genomes. Trends in Genetics; 19, 128-130. (Pubmed)

Nikolaev SI, Berney C, Fahrni J, Mylnikov AP, Aleshin VV, Petrov N, Pawlowski J. 2003. Gymnophrys cometa and Lecythium sp. are core Cercozoa: evolutionary implications. Acta Protozoologica; 42, 183-190. (pdf)

Pawlowski J, Berney C. 2003. Episodic evolution of nuclear small subunit ribosomal RNA gene in the stem lineage of Foraminifera. In: Donoghue, P.C. and Smith, M.P. (eds.) Telling the evolutionary time: molecular clocks and the fossil record. Systematics Association Special; 66, 107-118.

Pawlowski J, Gooday AJ, Cornelius N. 2003. Diversity of deep-sea benthic foraminifera - molecular and morphological aspects. Berichte zur Polar- und Meeresforschung; 470, 51-56.

Pawlowski J, Holzmann M, Berney C, Fahrni J, Gooday AJ, Cedhagen T, Habura A, Bowser SS. 2003. The evolution of early Foraminifera. Proceedings of the National Academy of Sciences; 100, 11494-11498. (Pubmed, pdf)

Pawlowski J, Holzmann M, Fahrni J Richardson SL. 2003. SSU rDNA suggests that the Xenophyophorean Syringammina corbicula is a foraminiferan. The Journal of Eukaryotic Microbiology; 50, 483-487. (pdf)

2002

Burki F, Berney C, Pawlowski J. 2002. Phylogenetic position of Gromia oviformis Dujardin inferred from nuclear-encoded small subunit ribosomal DNA. Protist; 153, 251-260. (pdf)

Cedhagen T, Pawlowski J. 2002. Toxisarcon synsuicidica n.gen, n.sp., a large monothalamous foraminiferan from the west coast of Sweden. Journal of Foraminiferal Research; 32, 351-357.

de Vargas C, Bonzon M, Rees NW, Pawlowski J, Zaninetti L. 2002. A molecular approach to biodiversity and biogeography in the planktonic foraminifer Globigerinella siphonifera (d'Orbigny). Marine Micropalentology; 45, 101-116. (pdf)

Fama P, Jousson O, Zaninetti L, Meinesz A, Dini F, Di Giuseppe G, Millars AJK, Pawlowski J. 2002. Genetic polymorphism in Caulerpa taxifolia (Ulvophyceae) chloroplast DNA revealed by a PCR-based assay of the invasive Mediterranean strain. Journal of Evolutionary Biology; 15, 1-7.

Holzmann M, Pawlowski J. 2002. Freshwater foraminiferans from Lake Geneva: past and present. Journal of Foraminiferal Research; 2, 344-350.

Jousson O, Bartoli P. 2002. Species diversity among the genus Monorchis (Digenea: Monorchiidae) parasitic in marine teleosts: molecular, morphological and morphometrical studies with a description of Monirchis blennii n.sp. Parasitology Research; 88, 230-241. (Pubmed)

Lobban CS, Schefter M, Simpson AGB, Pochon X, Pawlowski J, Foissner W. 2002. Maristentor dinoferus n.gen. n.sp., a giant heterotrich ciliate (Spirotrichea: Heterotrichida) with zooxanthellae, from coral reefs on Guam, Mariana Islands. Marine Biology.; 140, 411-423. (pdf)

Montoya-Burgos JI, Weber C, Le Bail P-Y. 2002. Phylogenetic relationships within Hypostomus (Siluriformes: Loricariidae) and related genera based on mitochondrial D-loop sequences. Revue suisse Zoologie; 109, 369-382.

Pawlowski J, Fahrni J, Bowser SS. 2002. Phylogenetic analysis and genetic diversity of Notodendrodes hyalinosphaira. Journal of Foraminiferal Research; 32, 173-176.

Pawlowski J, Fahrni J, Bowser SS. 2002. Phylogenetic analysis and genetic diversity of Notodendrodes hyalinosphaira. Journal of Foraminiferal Research; 32, 173-176.

Pawlowski J, Fahrni JF, Brykczynska U, Habura A, Bowser SS. 2002. Molecular data reveal high taxonomic diversity of allogromiid foraminifera in Explorers Cove (McMurdo Sound, Antarctica). Polar Biology; 25, 96-105.

Pawlowski J, Holzmann M. 2002. Molecular phylogeny of Foraminifera - a review. European Journal of Protistology; 38, 1-10.

Pawlowski J, Holzmann M, Berney C, Fahrni J, Cedhagen T, Bowser SS. 2002. Phylogeny of allogromiid Foraminifera inferred from SSU rRNA gene sequences. Journal of Foraminiferal Research; 32, 334-343.

Smirnov AV, Nassonova E, Holzmann M, Pawlowski J. 2002. Morphological, ecological and molecular studies of Vannella simplex Wohlfarth-Bottermann 1960 (Lobosea, Gymnamoebia), with a new diagnosis of this species. Protist; 153, 367-377. (pdf)

2001

Bernasconi MV, Pawlowski J, Valsangiacomo C, Piffaretti J-C, Ward PI. 2001. Phylogeny of the genus Scathophaga (Diptera: Scathophagidae) inferred from mitochondrial DNA sequences. Canadian Journal of Zoology; 79, 517-524.

Bolivar I, Fahrni JF, Smirnov A, Pawlowski J. 2001. SSU rRNA-based phylogenetic position of the genera Amoeba and Chaos (Lobosea, Gymnamoebia): the origin of Gymnamoebae revisited. Molecular Biology and Evolution; 18, 2306-2314. (Pubmed, pdf)

de Vargas C, Renaud S, Hilbrecht H, Pawlowski J. 2001. Pleistocene adaptive radiation in Globorotalia truncatulinoides: genetic, morphologic, and environmental evidence. Paleobiology; 27, 104-125.

Guipponi M, Tapparel C, Jousson O, Scamuffa N, Mas C, Rossier C, Hutter P, Meda P, Lyle R, Reymond A, Antonarakis SE. 2001. The murine orthologue of the Golgi-localized TPTE protein provides clues to the evolutionary history of the human TPTE gene family. Human Genetics; 109, 569-575. (Pubmed)

Holzmann M, Hohenegger J, Hallock P, Piller WE, Pawlowski J. 2001. Molecular phylogeny of large miliolid foraminifera (Soritacea Ehrenberg 1839). Mar. Micropaleontol; 43, 57-74. (pdf)

Jousson O, Bartoli P. 2001. Molecules, morphology and morphometrics of Cainocreadium labracis and Cainocreadium dentecis n. sp. (Digenea: Opecoelidae) parasitic in marine fishes. International Journal for Parasitology; 31, 706-714. (Pubmed)

Langeani F, Oyakawa OT, Montoya-Burgos JI. 2001. New species of Harttia (Loricariidae, Loricariinae) from the Rio Sao Francisco Basin. Copeia; 1, 136-142.

Meisterfeld R, Holzmann M, Pawlowski J. 2001. Morphological and molecular characterization of a new terrestrial allogromiid species: Edaphoallogromia australica gen. et spec. nov., (Foraminifera) from Northern Queensland (Australia). Protist; 152, 185-192. (Pubmed)

Pawlowski J, Holzmann M, Fahrni JF, Hallock P. 2001. Molecular identifcation of algal endosymbionts in large miliolid foraminifera: 2. Chlorophytes. The Journal of Eukaryotic Microbiology; 48, 362-367. (Pubmed, pdf)

Pawlowski J, Holzmann M, Fahrni JF, Pochon X, Lee JJ. 2001. Molecular identifcation of algal endosymbionts in large miliolid foraminifera: 2. Dinoflagellates. The Journal of Eukaryotic Microbiology; 48, 368-373. (Pubmed, pdf)

Picard D, Jousson O. 2001. Genetic variability among cercariae of the Schistosomatidae (Trematoda: Digenea) causing swimmer's itch in Europe. Parasite; 8, 237-242. (Pubmed)

Pochon X, Pawlowski J, Zaninetti L, Rowan R. 2001. High genetic diversity and relative specificity among Symbiodinium-like endosymbiotic dinoflagellates in soritid foraminiferans. Marine Biology; 139, 1069-1078. (pdf)

2000

Bartoli P, Jousson O, Russell-Pinto F. 2000. The life cycle of Monorchis parvus (Digenea: Monorchiidae) demonstrated by developmental and molecular data. The Journal of Parasitology; 86, 479-489. (Pubmed)

Bernasconi MV, Pawlowski J, Valsangiacomo C, Piffaretti J-C, Ward P. 2000. Phylogeny of Scathophagidae (Diptera, Calyptratae) based on mitochondrial DNA sequences. Molecular Phylogenetics and Evolution; 16, 308-15. (Pubmed)

Berney C, Pawlowski J, Zaninetti L. 2000. Elongation Factor 1-Alpha sequences do not support an early divergence of the Acoela. Molecular Biology and Evolution; 17, 1032-1039. (Pubmed, pdf)

Desdevises Y, Jovelin R, Jousson O, Morand S. 2000. Comparison of ribosomal DNA sequences of Lamellodiscus spp. (Monogenea, Diplectanidae) parasiting Pagellus (Sparidae, Teleostei) in the North Mediterranean Sea: species divergence and coevolutionary interactions. International Journal for Parasitology; 30, 741-746. (Pubmed)

Gauchat D, Mazet F, Berney C, Schummer M, Kreger S, Pawlowski J, Galliot B. 2000. Evolution of Antp-class genes and differential expression of Hydra Hox/paraHox genes in anterior patterning. Proceedings of the National Academy of Sciences; 97, 4493-4498. (Pubmed)

Holzmann M. 2000. Species concept in foraminifera: Ammonia as a case study. Micropaleontology; 46, (supplement no 1) 21.

Holzmann M, Pawlowski J. 2000. Taxonomic relationships in the genus Ammonia (Foraminifera) based on ribosomal DNA sequences. J. Micropaleontol.; 19, 85-95.

Jousson O, Bartoli P. 2000. The life cycle of Opecoeloides columbellae (Pagenstecher, 1863) n. comb. (Digenea, Opecoelidae): evidence from molecules and morphology. International Journal for Parasitology; 30, 747-760. (Pubmed)

Jousson O, Bartoli P, Pawlowski J. 2000. Cryptic speciation among intestinal parasites (Trematoda: Digenea) infecting sympatric host fishes (Sparidae). Journal of Evolutionary Biology; 13, 778-785.

Jousson O, Pawlowski J, Zaninetti L, Zechman FW, Dini F, Di Giuseppe G, Woodfield R, Millar A, Meinesz A. 2000. Invasive alga reaches California. Nature; 408, 157-158. (Pubmed, pdf)

Kedra AH, Tkach VV, Swiderski Z, Pawlowski Z, Emets Pawlowski J. 2000. Molecular characterisation of Echinococcus granulosus from a wild boar. Acta Parasitologica; 45, 121-122.

Pawlowski J. 2000. Introduction to the molecular systematics of foraminifera. Micropaleontology; 46, (supplement no1) 1-1.

Tkach V, Pawlowski J, Mariaux, J. 2000. Phylogenetic analysis of the suborder Plagiorchiata (Platyhelminthes, Digenea) based on partial lsrDNA sequences. International Journal for Parasitology; 30, 83-93. (Pubmed)

Tkach V, Pawlowski J, Sharpilo VP. 2000. Molecular and morphological differentiation between species of the Plagiorchis verspertilionis group (Digenea, Plagiorchiidae) occurring in European bats, with a re-description of P. vespertilionis (Müller, 1780). Systematic Parasitology; 47, 9-22. (Pubmed)

Tsuchiya M, Kitazato H, Pawlowski J. 2000. Phylogenetic relationships among species of Glabratellidae (Foraminifera) inferred from ribosomal DNA sequences: Comparison with morphological and reproductive data. Micropaleontology; 46, ( supplement no1) 1.

1999

de Vargas C, Norris R, Zaninetti L, Gibb SW, Pawlowski J. 1999. Molecular evidence of cryptic speciation in planktonic foraminifers and their relation to oceanic provinces. Proceedings of the National Academy of Sciences; 96, 2864-2868. (Pubmed)

Jousson O, Bartoli P. 1999. The life-cycle of three species of the Mesometridae (Digenea) with comments on the taxonomic status of this family. Systematic Parasitology; 44, 217-228. (Pubmed)

Jousson O, Bartoli P, Pawlowski J. 1999. Molecular identification of developmental stages in Opecoelidae (Digenea). International Journal for Parasitology; 29, 1853-1858. (pdf)

Pawlowski J, Bolivar I, Fahrni J, de Vargas C, Bowser SS. 1999. Molecular evidence that Reticulomyxa filosa is a freshwater naked foraminifer. Journal of Eukaryotic Microbiology; 46, 612-617. (Pubmed)

Pawlowski J, Bolivar I, Fahrni J, de Vargas C, Bowser SS. 1999. Naked foraminiferans revealed. Nature; 399, 27. (pdf)

Tkach V, Pawlowski J. 1999. A new method of DNA extraction from the ethanol-fixed parasitic worms. Acta Parasitologica; 44, 147-148.

Tortoli E, Kroppenstedt RM, Bartoloni A, Caroli G, Jan I, Pawlowski J, Emler S. 1999. Mycobacterium tusciae sp. nov. International Journal of Systematic Bacteriology; 49, 1839-44. (Pubmed)

1998

de Vargas C, Pawlowski J. 1998. Molecular versus taxonomic rates of evolution in planktonic foraminifera. Molecular Phylogenetics and Evolution; 9, 463-469. (pdf)

Holzmann M, Piller W, Zaninetti L, Fenner R, Martini R, Serandrei-Barbero R, Pawlowski J. 1998. Molecular versus morphologic variability in Ammonia spp. (Foraminifera, Protozoa) from the Lagoon of Venice, Italy. Revue de Micropaléontologie; 41, 59-69.

Jousson O, Bartoli P, Pawlowski J. 1998. Molecular phylogeny of Mesometridae (Trematoda, Digenea) with its relation to morphological changes in parasites. Parasite; 5, 365-369. (Pubmed)

Jousson O, Bartoli P, Zaninetti L, Pawlowski J. 1998. Use of the ITS rDNA for elucidation of some life-cycles of Mesometridae (Trematoda, Digenea). International Journal for Parasitology; 28, 1403-1411.

Jousson O, Pawlowski J, Zaninetti L, Meinesz A, Boudouresque CF. 1998. Molecular evidence for the aquarium origin of the green alga Caulerpa taxifolia introduced to the Mediterranean Sea. Marine Ecology Progress Series; 172, 275-280.

1997

de Vargas C, Zaninetti L, Hilbrecht H, Pawlowski J. 1997. Phylogeny and rates of molecular evolution of planktonic foraminifera: SSU rDNA sequences compared to the fossil record. Journal of Molecular Evolution; 45, 285-294. (Pubmed)

Fahrni J, Pawlowski J, Richardson S, Debenay J-P, Zaninetti L. 1997. Actin suggests Miliammina fusca (Brady) is related to porcellaneous rather than to agglutinated foraminifera. Micropaleontology; 43, 211-214.

Holzmann M, Pawlowski J. 1997. Molecular, morphological and ecological evidence for species recognition in Ammonia (Foraminifera). Journal Foraminiferal Research; 27, 311-318.

Montoya-Burgos J-I, Muller S, Weber C, Pawlowski J. 1997. Phylogenetic relationships between Hypostominae and Ancistrinae (Siluroidei: Loricariidae) first results from mitochondrial 12S and 16S rRNA gene sequences. Revue suisse de Zoologie; 104, 185-198.

Pawlowski J, Bolivar I, Fahrni J, de Vargas C, Gouy M, Zaninetti L. 1997. Extreme differences in rates of molecular evolution of foraminifera revealed by comparison of ribosomal DNA sequences and the fossil record. Molecular Biology and Evolution; 14, 498-505. (pdf)

1996

Holzmann M, Pawlowski J. 1996. Preservation of foraminifera for DNA extraction and PCR amplification. Journal of Foraminiferal Research; 26, 264-267.

Holzmann M, Piller W, Pawlowski J. 1996. Sequence variations in large-subunit ribosomal RNA gene of Ammonia (Foraminifera, Protozoa) and their evolutionary implications. Journal of Molecular Evolution; 43, 145-151. (Pubmed)

Ninet B, Monod M, Emler S, Pawlowski J, Metral C, Rohner P, Auckenthaler R, Hirschel B. 1996. Two different 16S rRNA genes in a mycobacterial strain. Journal of Clinical Microbiology; 34, 2531-2536. (Pubmed)

Pawlowski J, Bolivar I, Fahrni J, Cavalier-Smith T, Gouy M. 1996. Early origin of foraminifera suggested by SSU rRNA gene sequences. Molecular Biology and Evolution; 13, 445-450. (pdf)

Pawlowski J, Kmieciak D, Szadziewski R, Burkiewicz A . 1996. Attempted isolation of DNA from insects embedded in Baltic amber. Inclusion - Wrostek, Paleontological Newsletter and Workshop, Cracow, Poland; 22, 12-13.

Pawlowski J, Montoya-Burgos J-I, Fahrni J, Wüest J, Zaninetti L. 1996. Origin of the Mesozoa inferred from 18S rRNA gene sequences. Molecular Biology and Evolution; 13, 1128-1132. (Pubmed)

Pawlowski J, Szadziewski R, Kmieciak D, Fahrni J, Bittar G. 1996. Phylogeny of the infraorder Culicomorpha (Diptera: Nematocera) based on 28S rRNA gene sequences. Systematic Entomology; 21, 167-178.