Artificial tongues and leaves
N. Banerji, R. Bhosale, G. Bollot, S.M. Butterfield, A. Fürstenberg, V. Gorteau, S. Hagihara, A. Hennig, S. Maity, J. Mareda, S. Matile, F. Mora, A. Perez-Velasco, V. Ravikumar, R.S.K. Kishore, N. Sakai, D.-H. Tran and Pure and Applied Chemistry, 80 (8) (2008), p1873-1882 Keywords: lipid bilayer; nanoarchitecture; photosynthesis; photovoltaics; scaffolds; sensors
DOI:10.1351/pac200880081873 | unige:8008 | Abstract | Article PDF
The objective with synthetic multifunctional nanoarchitecture is to create large suprastructures with interesting functions. For this purpose, lipid bilayer membranes or conducting surfaces have been used as platforms and rigid-rod molecules as shape-persistent scaffolds. Examples for functions obtained by this approach include pores that can act as multicomponent sensors in complex matrices or rigid-rod π-stack architecture for artificial photosynthesis and photovoltaics.
Chiral 1,1'-binaphthyl-2,2'-dithiol-stabilized gold clusters: Size separation and optical activity in the UV-vis
C. Gautier, R. Taras, S. Gladiali and Chirality, 20 (3-4) (2008), p486-493 Keywords: circular dichroism; optical activity; 1,1′-binaphthyl-2,2′-dithiol; nanoparticles; gold; size separation
DOI:10.1002/chir.20488 | unige:14705 | Abstract | Article PDF
Gold particles covered with 1,1′-binaphthyl-2,2′-dithiol (BINAS) were prepared. Using size exclusion chromatography, it was possible for the first time to separate the sample into fractions with different sizes and colors. Transmission electron microscopy shows that the particles are very small, in the order of 1 nm or slightly above. The absorption spectra of the separated samples show rich structure. The particles show size-dependent optical activity in metal-based electronic transitions. The shape of both the absorption and circular dichroism spectra of one of the smallest fractions exhibits similarities with the spectra reported for Au11 covered by 2,2′-bis(diphenylphosphino)-1,1′-biphenyl although the spectra are shifted to shorter wavelengths in the case of the dithiol. The anisotropy factors, Δϵ/ϵ of these particles are as large as 4 × 10−3, which is larger than the values reported for gold particles stabilized by phosphines and water-soluble thiols. This indicates that BINAS is particularly well-suited to impart chirality on to gold particles.
A combination of in situ attenuated total reflection infrared (ATR-IR) spectroscopy, UV−vis spectroscopy and transmission electron microscopy was used to study the adsorption of thiol-protected gold nanoparticles on TiO2 films and the behavior of the resulting composite films upon UV irradiation. The gold nanoparticles were covered by charged thiols N-acetyl-l-cysteine and l-glutathione and had a mean core diameter of about 1 nm. The TiO2 film was prepared by deposition of a slurry of TiO2 nanoparticles with a particles size of 21 nm. The combination of the two spectroscopic techniques showed that the adsorption of the gold nanoparticles onto the TiO2 films is significantly limited by intrafilm diffusion. Upon illumination the IR spectra revealed the removal of the adsorbed thiolates and the appearance of sulfates. These species were also observed when N-acetyl-l-cysteine adsorbed on TiO2 was illuminated, i.e., in the absence of gold. In the latter case oxalate was observed in large quantity on the TiO2 surface, in contrast to the illumination of the N-acetyl-l-cysteine-protected gold particles. This indicates a different pathway for the decomposition of the adsorbed thiol when adsorbed on the gold or directly on the TiO2 surface. In situ UV−vis spectroscopy also shows the formation of larger particles upon illumination, which is confirmed by transmission electron microscopy.
Using simple organic synthetic transformations, a novel diazaoxatricornan derivative, the 12c-methyl-12-phenyl-8-propyl-12,12c-dihydro-8H-4-oxa-8,12-diazadibenzo[cd,mn]pyrene (6a), was prepared. This novel chiral cup-shaped molecule was isolated in racemic form and in excellent yield after the addition of methyl lithium to the BF4 salt of a novel unsymmetrical diazaoxatriangulenium cation. Compound 6a was found to be stable under classical laboratory conditions—something not obvious considering the extreme stability of the carbenium ion precursor, the electron-rich nature of the core, and the strain induced by the pyramidalization of the central carbon. The enantiomers were readily separated by chiral stationary phase chromatography, and the absolute configuration of (−)-(S)-6a was determined by a comparison of the experimental and theoretical vibrational circular dichroism (VCD) spectra. This isolation of (−)-(S)-6a and (+)-(R)-6a constitutes thus the first report of a nonracemic closed-capped chiral bowl molecule for which the chirality is due to the intrinsic dissymmetry of the central core of the structure only.
The thiolate-for-thiolate ligand exchange was performed on well-defined gold nanoparticles under an inert atmosphere without any modification of the core size. This reaction is faster than the well-known core etching. Surprisingly, if a chiral thiol is exchanged for its opposite enantiomer, the optical activity in the metal-based electronic transitions is reversed although the form of the CD spectra remains largely unchanged. The extent of inversion corresponds to the overall ee of the chiral ligand in the system. This shows that the chiral arrangement of metal atoms in the metal particle (surface) can not withstand the driving force imposed by the ligand of opposite absolute configuration. If the incoming thiol has a different structure, the electronic transitions in the metal core are slightly modified whereas the absorption onset remains unchanged. These results emphasize the influence of the thiols on the structure of the gold nanoparticles and give insight on the ligand exchange pathways.
Modulation excitation spectroscopy (MES) allows sensitive and selective detection and monitoring of the dynamic behavior of species directly involved in a reaction. The method, combined with proper in situ spectroscopy, is powerful for elucidating complex systems and noisy data as often encountered in heterogeneous catalytic reactions at solid–liquid and solid–gas interfaces under working conditions. The theoretical principle and actual data processing of MES are explained in detail. Periodic perturbation of the system by an external parameter, such as concentration and temperature, is utilized as stimulation in MES. The influence of stimulation shape upon response analysis is explained. Furthermore, an illustrative example of MES, enantioselective hydrogenation at a solid-liquid interface, is presented.
Liquid-Crystalline Thiol- and Disulfide-Based Dendrimers for the Functionalization of Gold Nanoparticles
S. Frein, J. Boudon, M. Vonlanthen, T. Scharf, J. Barberá, G. Süss-Fink, and R. Deschenaux Helvetica Chimica Acta, 91 (12) (2008), p2321-2337 Keywords: liquid-crystals; dendrimers; gold nanoparticles; nanoparticles
DOI:10.1002/hlca.200890253 | unige:14703 | Abstract | Article PDF
Liquid-crystalline dendrons carrying either a thiol or disulfide function which display nematic, smectic A, columnar, or chiral nematic phases have been synthesized. Their mesomorphic properties are in agreement with the nature of the mesogenic units and structure of the dendrons. The first-generation poly(aryl ester) dendron containing two cyanobiphenyl mesogenic units was used to functionalize gold nanoparticles. For full coverage, a smectic-like supramolecular organization on the nanometer scale is observed, when the gold nanoparticles are spread onto carbon-coated copper grids. This result indicates that the dendritic ligands reported here act as self-organization promoters.
What governs nitrogen configuration in substituted aminophosphines?
M.D. Wodrich, A. Vargas, , G. Merino and C. Corminboeuf Journal of Physical Organic Chemistry, 22 (2) (2008), p101-109 Keywords: stereoelectronic effects • electron delocalization • hyperconjugation • density functional theory
DOI:10.1002/poc.1431 | unige:3181 | Abstract | Article PDF
The trigonal planar geometry of the nitrogen atom in commonly used phosphoramidite ligands is not in line with the traditional valence shell electron pair repulsion (VSEPR) model. In this work, the effects governing nitrogen configuration in several substituted aminophosphines, A2PNB2 (A or B = H, F, Cl, Br, Me, OMe, BINOP), are examined using modern computational analytic tools. The electron delocalization descriptions provided by both electron localization function (ELF) and block localized wavefunction analysis support the proposed relationships between conformation and negative hyperconjugative interactions. In the parent H2PNH2, the pyramidal nitrogen configuration results from nitrogen lone pair electron donation into the σ* P — H orbital. While enhanced effects are seen for F2PNMe2, placing highly electronegative fluorine substituents on nitrogen (i.e., Me2PNF2) eliminates delocalization of the nitrogen lone pair. Understanding and quantifying these effects can lead to greater flexibility in designing new catalysts.
3MLCT excited states in Ru(II) complexes: Reactivity and related two-photon absorption applications in the near-infrared spectral range
G. Lemercier, A. Bonne, M. Four and Comptes Rendus Chimie, 11 (6-7) (2008), p709-715 Keywords: Ruthenium(II) complexes; Polypyridyl ligands; Two-photon absorption; 3MLCT; Dioxygen sensors; Photodynamic therapy
DOI:10.1016/j.crci.2007.11.012 | unige:3561 | Article PDF
The synthesis and characterization of new 1,10-phenanthroline-based chromophores LT1, LT2 and LD1 featuring fluorene unit(s) are reported. Their absorption and emission as well as their two-photon absorption properties in the 450–650 nm spectral range are discussed in comparison with the parent 1,10-phenanthroline and already described ligands L1 and L2.
(a) IXS spectrum recorded at (310) (solid diamonds) compared to the resolution function (solid line) . (b) Phonon dispersion in high-symmetry directions; experimental points empty symbols connected by a guide for the eyes (solid lines) are compared with the ab initio calculations (dashed lines) for the F43m structure. The estimated experimental errors are less than the symbol size.
Polarization-sensitive ultrafast infrared measurements on photoinduced electron transfer in donor-acceptor pairs in polar acetonitrile show distinct contributions from loose and tight ion pairs. Highly anisotropic signals from tight ion pairs reveal the importance of mutual orientation of the reactants (see picture) and thus the need to refine theoretical models based on spherical species that solely involve reaction distances.
Multiconfigurational quantum chemical calculations on the R-diimines dichromium compound confirm that the Cr−Cr bond, 1.80 Å, is among the shortest CrI−CrI bonds. However, the bond between the two Cr atoms is only a quadruple bond rather than a quintuple bond. The reason why the bond is so short has to be attributed to the strain in the NCCN ligand moieties.
Ruthenium(II) Coordination Chemistry of a Fused Donor-Acceptor Ligand: Synthesis, Characterization and Photoinduced Electron Transfer Reactions of [{Ru(bpy)2}n(TTF-ppb)](PF6)2n (n = 1, 2)
C. Goze, N. Dupont, E. Beitler, C. Leiggener, H. Jia, P. Monbaron, S.-X. Liu, A. Neels, and S. Decurtins Inorganic Chemistry, 47 (23) (2008), p11010-11017
DOI:10.1021/ic801252t | unige:3564 | Abstract | Article HTML | Article PDF
A π-extended, redox-active bridging ligand 4′,5′-bis(propylthio)tetrathiafulvenyl[i]dipyrido[2,3-a:3′,2′-c]phenazine (L) was prepared via direct Schiff-base condensation of the corresponding diamine−tetrathiafulvalene (TTF) precursor with 4,7-phenanthroline-5,6-dione. Reactions of L with [Ru(bpy)2Cl2] afforded its stable mono- and dinuclear ruthenium(II) complexes 1 and 2. They have been fully characterized, and their photophysical and electrochemical properties are reported together with those of [Ru(bpy)2(ppb)]2+ and [Ru(bpy)2(μ-ppb)Ru(bpy)2]4+ (ppb = dipyrido[2,3-a:3′,2′-c]phenazine) for comparison. In all cases, the first excited state corresponds to an intramolecular TTF → ppb charge-transfer state. Both ruthenium(II) complexes show two strong and well-separated metal-to-ligand charge-transfer (MLCT) absorption bands, whereas the 3MLCT luminescence is strongly quenched via electron transfer from the TTF subunit. Clearly, the transient absorption spectra illustrate the role of the TTF fragment as an electron donor, which induces a triplet intraligand charge-transfer state (3ILCT) with lifetimes of approximately 200 and 50 ns for mono- and dinuclear ruthenium(II) complexes, respectively.
The excited-state dynamics of covalently linked electron donor−acceptor systems consisting of N,N-dimethylaniline (DMA) as electron donor and either perylene (Pe) or cyanoperylene (CNPe) as acceptor has been investigated in a large variety of solvents, including a room-temperature ionic liquid, by using femtosecond time-resolved fluorescence and absorption spectroscopy. The negligibly small solvent dependence of the absorption spectrum of both compounds and the strong solvatochromism of the fluorescence are interpreted by a model where optical excitation results in the population of a locally excited state (LES) and emission takes place from a charge-separated state (CSS). This interpretation is supported by the fluorescence up-conversion and the transient absorption measurements that reveal substantial spectral dynamics in polar solvents only, occurring on time scales going from a few hundreds of femtoseconds in acetonitrile to several tens of picoseconds in the ionic liquid. The early transient absorption spectra are similar to those found in nonpolar solvents and are ascribed to the LES absorption. The late spectra due to CSS absorption show bands that are red-shifted relative to those of the radical anion of the acceptor moiety by an amount that depends on solvent polarity, pointing to partial charge separation. Global analysis of the time-resolved data indicates that the charge separation dynamics in PeDMA is essentially solvent controlled, whereas that in CNPeDMA is faster than diffusive solvation, this difference being accounted for by a larger driving force for charge separation in the latter. On the other hand, the CSS lifetime of PeDMA is of the order of a few nanoseconds independently of the solvent, whereas that of CNPeDMA decreases with increasing solvent polarity from a few nanoseconds to a few hundreds of picoseconds. Comparison of these results with previously published data on the fluorescence quenching of Pe and CNPe in pure DMA shows that the charge separation and the ensuing charge recombination occur on similar time scales independently of whether these processes are intra- or intermolecular.
The ground and excited states of neutral and cationic PuO and PuO2 have been studied with multiconfigurational quantum chemical methods followed by second order perturbation theory, the CASSCF/CASPT2 method. Scalar relativistic effects and spin–orbit coupling have been included in the treatment. As literature values for the ionization energy of PuO2 are in the wide range of ~6.6 eV to ~10.1 eV, a central goal of the computations was to resolve these discrepancies; the theoretical results indicate that the ionization energy is near the lower end of this range. The calculated ionization energies for PuO, PuO+ and PuO2+ are in good agreement with the experimental values.
A strategy to construct approximants to the kinetic-energy-functional dependent component (v[ρA,ρB](→r)) of the effective potential in one-electron equations for orbitals embedded in a frozen-density environment [Eqs. (20) and (21) in Wesolowski and Warshel, J. Phys. Chem. 97, (1993) 8050 ] is proposed. In order to improve the local behavior of the orbital-free effective embedding potential near nuclei in the environment, the exact behavior of vt[ρA,ρB](→r) at ρA→0 and ∫ρBd→r = 2 is taken into account. As a result, the properties depending on the quality of this potential are invariably improved compared to the ones obtained using conventional approximants which violated the considered exact condition. The approximants obtained following the proposed strategy and especially the simplest one constructed in this work are nondecomposable, i.e., cannot be used to obtain the analytic expression for the functional of the total kinetic energy.
LiSc(BH4)4 has been prepared by ball milling of LiBH4 and ScCl3. Vibrational spectroscopy indicates the presence of discrete Sc(BH4)4− ions. DFT calculations of this isolated complex ion confirm that it is a stable complex, and the calculated vibrational spectra agree well with the experimental ones. The four BH4− groups are oriented with a tilted plane of three hydrogen atoms directed to the central Sc ion, resulting in a global 8 + 4 coordination. The crystal structure obtained by high-resolution synchrotron powder diffraction reveals a tetragonal unit cell with a = 6.076 Å and c = 12.034 Å (space group P-42c). The local structure of the Sc(BH4)4− complex is refined as a distorted form of the theoretical structure. The Li ions are found to be disordered along the z axis.
IR and Raman data were obtained from α-, β-, and mixed (β,γ)-Ca(BH 4) 2 samples and from the deuterated β,γ phase mixture. The results obtained with α phase indicate that the DFT calculated values for the B−H stretching modes and the lattice vibrations are fairly close to the experimental values. The spectral behavior at temperatures around the transition to the β phase shows a continuous transition and suggests the presence of disorder caused by reorientational motions of the [BH 4] − ion in the β phase. The data indicate that there are more deformation bands observed for the mixed (β,γ) samples than for the α phase which indicates structural variations between the β and the γ phases.
The photophysical properties of multichromophoric systems consisting of eight red or blue naphthalene diimides (NDIs) covalently attached to a p-octiphenyl scaffold, as well as a blue bichromophoric system with a biphenyl scaffold, have been investigated in detail using femtosecond time-resolved spectroscopy. The blue octachromophoric systems have been recently shown to self-assemble as supramolecular tetramers in lipid bilayer membranes and to enable generation of a transmembrane proton gradient upon photoexcitation (Bhosale, S.; Sisson, A. L.; Talukdar, P.; Fürstenberg, A.; Banerji, N.; Vauthey, E.; Bollot, G.; Mareda, J.; Röger, C.; Würthner, F.; Sakai, N.; Matile, S. Science2006, 313, 84). A strong reduction of the fluorescence quantum yield was observed when going from the single NDI units to the multichromophoric systems in methanol, the effect being even stronger in a vesicular lipid membrane. Fluorescence up-conversion measurements reveal ultrafast self-quenching in the multichromophoric systems, whereas the formation of the NDI radical anion, evidenced by transient absorption measurements, points to the occurrence of photoinduced charge separation. The location of the positive charge could not be established unambiguously from the transient absorption measurements, but energetic considerations indicate that charge separation should occur between two NDI units in the blue systems, whereas both an NDI unit and the p-octiphenyl scaffold could act as electron donor in the red system. The lifetime of the charge-separated state was found to increase from 22 to 45 ps by going from the bi- to the octachromophoric blue systems in methanol, while a 400 ps decay component was observed in the lipid membrane. This lifetime lengthening is explained in terms of charge migration that is most efficient when the octachromophoric systems are assembled as supramolecular tetramers in the lipid membrane. Furthermore, the average charge-separated state lifetime of the red system in methanol is even larger and amounts to 750 ps. This effect cannot be simply explained in terms of Marcus inverted regime as the driving force for charge recombination in the red system is only slightly larger than in the blue one. A better spatial separation of the charges in the red system stemming from the localization of the hole on the p-octiphenyl scaffold could additionally contribute to the slowing down of charge recombination.
NaBH4·2H2O and NaBH4 were studied by single-crystal X-ray diffraction and vibrational spectroscopy. In NaBH4·2H2O, the BH4- anion has a nearly ideal tetrahedral geometry and is bridged with two Na+ ions through the tetrahedral edges. The structure does not contain classical hydrogen bonds, but reveals strong dihydrogen bonds of 1.77-1.95 Å. Crystal structures and vibrational spectra of NaBr·2H2O and NaBH4·2H2O reveal many similarities. The unit cell volume of NaBH4·2H2O increases linearly with temperature between 200 and 313 K. At 313-315 K, the hydrate decomposes into NaBH4 and H2O, which react to release hydrogen.
The excited-state dynamics of the methylperylene/tetracyanoethylene (MPe/TCNE) donor−acceptor complex has been investigated in various solvents using femtosecond transient absorption spectroscopy. The transient spectra reveal the formation of two types of ion pairs: The first (IP1), constituting the major fraction of the total ion-pair population, is characterized by a broad and red-shifted absorption spectrum compared to that of the free MPe cation and by a subpicosecond lifetime, whereas the second (IP2) has a spectrum closer to that of MPe cation and a lifetime of a few picoseconds. A substantial polarization anisotropy was observed with IP1 but not with IP2, indicating a relatively well-defined structure for the former. The reaction scheme that best accounts for the observed dynamics and its solvent dependence involves the simultaneous excitation of complexes that differ by their electronic coupling. The more coupled complexes have a high absorption coefficient and thus yield IP1, which undergoes ultrafast charge recombination, whereas the less coupled complexes have a lower probability to be excited and lead to the longer-lived IP2.
Towards inert and pre-organized d-block-containing receptors for trivalent lanthanides: The synthesis and characterization of triple-helical monometallic OsII and bimetallic OsII-LnIII complexes
T. Riis-Johannessen, N. Dupont, G. Canard, G. Bernardinelli, and C. Piguet Dalton Transactions, 28 (2008), p3661-3677
DOI:10.1039/b718885d | unige:3572 | Abstract | Article HTML | Article PDF
The mononuclear OsII complex [Os( L1)3](PF6)2 ( L1 = 5-methyl(1-methylbenzimidazol-2-yl)pyridine) is an obvious candidate for the design of an inert d-block-based tripodal receptor capable of binding and photosensitizing trivalent lanthanides (LnIII). It has thus been prepared and its two enantiomeric meridional (Δ-mer and Λ-mer) and facial (rac-fac) isomers have been separated by ion-exchange chromatography. The optical isomers have been characterized by CD spectroscopy and assignments of absolute configuration confirmed by an X-ray crystallographic study of Λ-mer-[Os( L1)3](PF6)2·1.5MeCN (monoclinic, P21, Z = 4). Comparison of the latter structure with that of racemic fac-[Os( L1)3](PF6)2 (monoclinic, C2/c, Z = 8) and [Os(bipy)3](PF6)2 (where bipy = 2,2' -bipyridine) shows minimal structural variations, but differences are observed in the photophysical and electrochemical properties of the respective compounds. Luminescence emissions from OsII complexes of L1 are typically lower in energy, with shorter lifetimes and lower quantum yields than their bipy analogues, whilst metal-centred oxidation processes are more facile due to the enhanced π-donor ability of L1. The key relationships between these parameters are discussed. Finally, though challenged by (i) the low reactivity of many osmium precursors and (ii) the irreversible formation of competing side products, the synthesis and purification of the heterobimetallic triple-stranded helicate HHH-[OsLu( L2)3](CF3SO3)5 has been realised, in which L2 is a segmental ligand containing the same bidentate unit as that found in L1 further connected to a tridentate binding site adapted for complexing LnIII. Its solid-state structure has been established by X-ray crystallography (triclinic, P1-, Z = 2).
The La + O and La + O2 chemiionization reactions have been investigated with quantum chemical methods. For La + O2(X3Σg) and La + O2(a1Δg), the chemiionization reaction La + O2 → LaO2+ + e− has been shown to be endothermic and does not contribute to the experimental chemielectron spectra. For the La + O2(X3Σg) reaction conditions, chemielectrons are produced by La + O2 → LaO + O, followed by La + O → LaO+ + e−. This is supported by the same chemielectron band, arising from La + O → LaO+ + e−, being observed from both the La + O(3P) and La + O2(X3Σg) reaction conditions. For La + O2(a1Δg), a chemielectron band with higher electron kinetic energy than that obtained from La + O2(X3Σg) is observed. This is attributed to production of O(1D) from the reaction La + O2(a1Δg) → LaO + O(1D), followed by chemiionization via the reaction La + O(1D) → LaO+ + e−. Potential energy curves are computed for a number of states of LaO, LaO* and LaO+ to establish mechanisms for the observed La + O → LaO+ + e− chemiionization reactions.
We report a comprehensive THz, infrared and optical study of Nb-doped SrTiO3 as well as dc conductivity and Hall effect measurements. Our THz spectra at 7 K show the presence of an unusually narrow (<2 meV) Drude peak. For all carrier concentrations the Drude spectral weight shows a factor of three mass enhancement relative to the effective mass in the local density approximation, whereas the spectral weight contained in the incoherent midinfrared response indicates that the mass enhancement is at least a factor two. We find no evidence of a particularly large electron-phonon coupling that would result in small polaron formation.
We describe the preparation of a helicate containing four closely spaced, linearly arrayed copper(I) ions. This product may be prepared either directly by mixing copper(I) with a set of precursor amine and aldehyde subcomponents, or indirectly through the dimerization of a dicopper(I) helicate upon addition of 1,2-phenylenediamine. A notable feature of this helicate is that its length is not limited by the lengths of its precursor subcomponents: each of the two ligands wrapped around the four copper(I) centers contains one diamine, two dialdehyde, and two monoamine residues. This work thus paves the way for the preparation of longer oligo- and polymeric structures. DFT calculations and electrochemical measurements indicate a high degree of electronic delocalization among the metal ions forming the cores of the structures described herein, which may therefore be described as "molecular wires".
77Se-enriched CpNi(bds) (bds = 1,2-benzenediselenolate), has been synthesized and its g tensor and 77Se hyperfine tensors have been obtained from its frozen solution electron paramagnetic resonance (EPR) spectrum. These parameters are consistent with those calculated by density functional theory (DFT); it is shown that 10% of the spin is localized on each selenium and that the direction associated to the maximum 77Se couplings is aligned along the gmin direction, perpendicular to the Ni(bds) plane. EPR measurements and DFT calculations are also carried out on the 77Se enriched complex CpNi(dsit) as well on the two dithiolene analogues CpNi(bdt) and CpNi(dmit). The optimized structures of the isolated CpNi(bds) and CpNi(bdt) complexes have been used to generate the idealized dimers (bds)NiCp···CpNi(bds) and (bdt)NiCp···CpNi(bdt) characterized by Cp···Cp overlap. The exchange parameters J calculated at the DFT level for these systems are in reasonable accord with the experimental values. The influence of the geometry of the dimer on its magnetic properties is assessed by calculating the variation of J as a function of the relative orientation of the two Ni(diselenolene) or Ni(dithiolene) planes.
A large set of electronic states of scandium dimer has been calculated using high-level theoretical methods such as quantum diffusion Monte Carlo (DMC), complete active space perturbation theory as implemented in GAMESS-US, coupled-cluster singles, doubles, and triples, and density functional theory (DFT). The 3Σu and 5Σu states are calculated to be close in energy in all cases, but whereas DFT predicts the 5Σu state to be the ground state by 0.08 eV, DMC and CASPT2 calculations predict the 3Σu to be more stable by 0.17 and 0.16 eV, respectively. The experimental data available are in agreement with the calculated frequencies and dissociation energies of both states, and therefore we conclude that the correct ground state of scandium dimer is the 3Σu state, which breaks with the assumption of a 5Σu ground state for scandium dimer, believed throughout the past decades.
Energy migration within the 2E state of Cr3+
M. Milos, S. Kairouani, S. Rabaste and Coordination Chemistry Reviews, 252 (23-24) (2008), p2540-2551 Keywords: resonant and phonon-assisted excitation energy migration; [Cr(ox)3]3-; fluorescence line narrowing; spectral diffusion
DOI:10.1016/j.ccr.2008.04.006 | unige:3575 | Article PDF
Excitation energy migration is an important phenomenon at high concentration of luminescent chromophores. In crystalline solids it results in a quenching of the intrinsic luminescence of the chromophore as the excitation energy migrates to impurity centres or other forms of trap sites. As concluded from the extensively studied systems where Cr3+ is doped as the active chromophore into inert host lattices, energy migration in crystalline solids is usually a phonon-assisted process, in which the simultaneous creation or annihilation of phonons helps to bridge the energy miss-match in the energy levels of two neighbouring chromophores within a inhomogeneously broadened absorption band. However, in the three-dimensional network systems [Ru(bpy)3][NaCr(ox)3] and [Rh(bpy)3][NaCr(ox)3]ClO4, it proved possible to unambiguously identify three different mechanisms for energy migration within the R1 line of the 4A2 → 2E transition of Cr3+. In addition to the common temperature dependant phonon-assisted process, a resonant process between the zero-field split components of the 4A2 ground state leading to a multi-line pattern in a fluorescence line narrowing spectrum and a quasi-resonant process within the same component leading to fast spectral diffusion can be identified at very low temperature. The parameters governing these processes are discussed and the behaviour of the model systems is compared to more conventional doped oxides and related systems.
The interaction between the spin transition and a crystallographic phase transition in the spin-crossover compound [Fe(bbtr)3](ClO4)2: Nucleation, formation of domains and fluctuations
I. Krivokapic, C. Enachescu, R. Bronisz and Inorganica Chimica Acta, 361 (12-13) (2008), p3616-3622
DOI:10.1016/j.ica.2008.03.064 | unige:3576 | Abstract | Article PDF
The thermal and the light-induced spin transition in [Fe(bbtr)3](ClO4)2 (bbtr = 1,4-di(1,2,3-triazol-1-yl)) as well as the high-spin → low-spin relaxation following the light-induced population of the high-spin state below the thermal transition temperature are discussed in relation to the accompanying crystallographic phase transition. The experimental data have exclusively been obtained using optical single crystal absorption spectroscopy.
The spin-crossover compound [Fe(bbtr)3](ClO4)2 (bbtr = 1,4-di(1,2,3-triazol-1-yl)butane) forms a polymeric hexagonal sheet structure. It shows an abrupt thermal spin transition with 13 K wide hysteresis around 105 K, as evidenced by single crystal optical spectroscopy. The transition temperature for the thermal high-spin→low-spin transition on cooling as well as the relaxation kinetics just below Tc↓ depend upon the history of the sample. This is typical for a nucleation and growth mechanism and domain formation. In contrast, the high-spin→low-spin relaxation following the light-induced population of the high-spin state at low temperatures is governed by the intersystem crossing process.
A series of mixed crystals with general formula Ba7-xNayF12Cl2-zBrz in the ordered modification (space group P-6) has been studied by single crystal x-ray diffraction. Depending on synthesis conditions, the disorder in the channels (i.e. occupation of 0 0 z sites) can be changed. The disorder is found to be correlated with the refined Na content, and its effect on Ba-Cl(Br) bond length is discussed.
Supramolecular 3D organization on gold with interdigitating intra- and interlayer recognition motifs (see picure, black p-oligophenyl rods; red, blue naphthalenediimide (NDI) stacks) is designed to access supramolecular cascade n/p-heterojunctions or the adaptable directionality needed to control fill factors in current-voltage curves.
The photophysics and excited-state dynamics of nitroperylene (NPe) in solvents of various polarities and viscosities, including a room-temperature ionic liquid, have been investigated by femtosecond-resolved transient absorption spectroscopy. The excited-state absorption spectrum was found to depend substantially on solvent polarity. In the most polar solvents, it is very similar to that of the NPe radical cation generated upon bimolecular quenching by an electron acceptor, denoting a substantial charge-transfer character of the S1 state. Contrary to smaller nitroaromatic compounds, NPe in the S1 state does not undergo ultrafast intersystem crossing (ISC) but decays mainly by internal conversion (IC). In nonprotic solvents, IC involves low-frequency modes with large amplitude motion associated with the nitro group and depends on both the solvent viscosity and polarity. It takes place on a 100 ps time scale in acetonitrile, while in cyclohexane, it is slow enough for ISC to become competitive. Moreover, both the fluorescence quantum yield and the excited-state dynamics were found to differ, depending on which side of the S0−S1 absorption band excitation was performed. This dependence is explained by the inhomogeneous nature of the absorption spectrum arising from a distribution of twist angles of the nitro group relative to the aromatic plane. On the other hand, such excitation wavelength effects were not observed in protic solvents, where the excited-state lifetime was found to be substantially shorter than that in nonprotic solvents. This behavior is rationalized in terms of a H-bonding interaction, which limits the torsional disorder of NPe and favors ultrafast nonradiative deactivation of the excited state. Transient absorption measurements performed for comparative purpose with nitropyrene in acetonitrile confirm the occurrence of ultrafast ISC in smaller nitroaromatic compounds.
A multireference second-order perturbation theory using a restricted active space self-consistent field wave function as reference (RASPT2/RASSCF) is described. This model is particularly effective for cases where a chemical system requires a balanced orbital active space that is too large to be addressed by the complete active space self-consistent field model with or without second-order perturbation theory (CASPT2 or CASSCF, respectively). Rather than permitting all possible electronic configurations of the electrons in the active space to appear in the reference wave function, certain orbitals are sequestered into two subspaces that permit a maximum number of occupations or holes, respectively, in any given configuration, thereby reducing the total number of possible configurations. Subsequent second-order perturbation theory captures additional dynamical correlation effects. Applications of the theory to the electronic structure of complexes involved in the activation of molecular oxygen by mono- and binuclear copper complexes are presented. In the mononuclear case, RASPT2 and CASPT2 provide very similar results. In the binuclear cases, however, only RASPT2 proves quantitatively useful, owing to the very large size of the necessary active space.
Some dimetal fullerenes M2@C60 (M = Cr, Mo, W) have been studied with computational quantum chemistry methods. The transition metal diatomic molecules Cr2, Mo2, W2 form exohedral complexes with C60, while U2 forms a highly symmetric endohedral compound and it is placed in the center of the C60 cavity. This highly symmetric structure is an artifact due to the small size of the C60 cavity, which constrains U2 at the center. If a larger cavity is used, like C70 or C84, U2 preferentially binds the internal walls of the cavity and the U−U bond no longer exists.
Quantum mechanical calculations, using both CASPT2 and DFT methods, for the model systems (MeMMMe, PhMMPh, (MeMMMe)(C6H6)2, Ar§MMAr§, Ar#MMAr#; M = Cr, Fe, Co; Ar§ = C6H4-2(C6H5), Ar# = C6H3-2,6(C6H3-2,6-Me2)2) are described. These studies were undertaken to provide a multireference description of the metal−metal bond in the simple dimers MeMMMe and PhMMPh (M = Cr, Fe, Co) and to determine the extent of secondary metal−arene interaction involving the flanking aryl rings of the terphenyl ligands in quintuply bonded Ar′CrCrAr′ (Ar′ = C6H3-2,6(C6H3-2,6-Pri2)2). We show that in the Cr−Cr species the Cr−arene interaction is a feeble one that causes only a small weakening of the quintuple bond. In sharp contrast, in the analogous Fe and Co species strong η6-arene interactions that preclude significant metal−metal bonding are predicted.
Stereoelectronic Effects on Molecular Geometries and State-Energy Splittings of Ligated Monocopper Dioxygen Complexes
C.J. Cramer, J.R. Gour, A. Kinal, M. Wloch, P. Piecuch, A. Rehaman Moughal Shahi and L. Gagliardi Journal of Physical Chemistry A, 112 (16) (2008), p3754-3767
DOI:10.1021/jp800627e | unige:22 | Abstract | Article HTML | Article PDF
The relative energies of side-on versus end-on binding of molecular oxygen to a supported Cu(I) species, and the singlet versus triplet nature of the ground electronic state, are sensitive to the nature of the supporting ligands and, in particular, depend upon their geometric arrangement relative to the O2 binding site. Highly correlated ab initio and density functional theory electronic structure calculations demonstrate that optimal overlap (and oxidative charge transfer) occurs for the side-on geometry, and this is promoted by ligands that raise the energy, thereby enhancing resonance, of the filled Cu dxz orbital that hybridizes with the in-plane π* orbital of O2. Conversely, ligands that raise the energy of the filled Cu dz2 orbital foster a preference for end-on binding as this is the only mode that permits good overlap with the in-plane O2 π*. Because the overlap of Cu dz2 with O2 π* is reduced as compared to the overlap of Cu dxz with the same O2 orbital, the resonance is also reduced, leading to generally more stable triplet states relative to singlets in the end-on geometry as compared to the side-on geometry, where singlet ground states become more easily accessible once ligands are stronger donors. Biradical Cu(II)-O2 superoxide character in the electronic structure of the supported complexes leads to significant challenges for accurate quantum chemical calculations that are best addressed by exploiting the spin-purified M06L local density functional, single-reference completely renormalized coupled-cluster theory, or multireference second-order perturbation theory, all of which provide predictions that are qualitatively and quantitatively consistent with one another.
A Dichromium(II) Bis(η8-pentalene) Double-Sandwich Complex with a Spin Equilibrium: Synthetic, Structural, Magnetic and Theoretical Studies
G. Balazs, F.G.N. Cloke, L. Gagliardi, J.C. Green, A. Harrison, P.B. Hitchcock, A. Rehaman Moughal Shahi and O.T. Summerscales Organometallics, 27 (9) (2008), p2013-2020
DOI:10.1021/om701153t | unige:65 | Abstract | Article HTML | Article PDF
The new bis(pentalene) complex Cr2(η5:η5-C8H41,4-SiiPr3)2 has been synthesized and characterized; it is found to exhibit paramagnetism at room temperature, and solid-state magnetic studies show that the dimer is best modeled as containing a pair of antiferromagnetically interacting S = ½ centers with the separation between the singlet ground state and triplet excited state being 2.23 kJ mol−1. Structural data show a Cr−Cr distance of 2.2514(15) Å, consistent with a strong metal−metal interaction. The bonding has been further investigated by density functional, hybrid, and CASPT2 methods. The metal−metal interaction is best described by a double bond with each metal having an 18-electron count. Theory predicts the singlet and triplet states to lie close in energy but puts the triplet state at a slightly lower energy than the singlet. The energy difference predicted by CASPT2 is closest to the experimental value.
Synthesis of a stable radical anion via the one electron reduction of a 1,1-bis-phosphinosulfide alkene derivative
T. Cantat, F. Biaso, A. Momin, L. Ricard, , N. Mézailles and P. Le Floch ChemComm, (7) (2008), p874-876
DOI:10.1039/b715380e | unige:42 | Abstract | Article HTML | Article PDF
A new type of stable radical ligand featuring a 1,1-bis-phosphinosulfide alkene backbone has been prepared and characterized on the basis of X-ray diffraction, EPR and DFT studies.
Laser-ablated Th atoms react with molecular hydrogen to give thorium hydrides and their dihydrogen complexes during condensation in excess neon and hydrogen for characterization by matrix infrared spectroscopy. The ThH2, ThH4, and ThH4(H2)x (x = 1−4) product molecules have been identified through isotopic substitution (HD, D2) and comparison to frequencies calculated by density functional theory and the coupled-cluster, singles, doubles (CCSD) method and those observed previously in solid argon. Theoretical calculations show that the Th−H bond in ThH4 is the most polarized of group 4 and uranium metal tetrahydrides, and as a result, a strong attractive “dihydrogen” interaction was found between the oppositely charged hydride and H2 ligands ThH4(H2)x. This bridge-bonded dihydrogen complex structure is different from that recently computed for tungsten and uranium hydride super dihydrogen complexes but is similar to that recently called the “dihydrogen bond” (Crabtree, R. H. Science 1998, 282, 2000). Natural electron configurations show small charge flow from the Th center to the dihydrogen ligands.
The codeposition of laser-ablated tungsten atoms with neat hydrogen at 4 K forms a single major product with a broad 2500 cm-1 and sharp 1860, 1830, 1782, 1008, 551, and 437 cm-1 absorptions, which are assigned to the WH4(H2)4 complex on the basis of isotopic shifts and agreement with isotopic frequencies calculated by density functional theory. This D2d structured complex was computed earlier to form exothermically from W atoms and hydrogen molecules. Annealing the matrix allows hydrogen to evaporate and the complex to aggregate and ultimately to decompose. Comparison of the H−H stretching mode at 2500 cm-1 and the W−H2 stretching mode at 1782 cm-1 with 2690 and 1570 cm-1 values for the Kubas complex W(CO)3(PR3)2(H2) suggests that the present physically stable WH4(H2)4 complex has more strongly bound dihydrogen ligands. Our CASPT2 calculations suggest a 15 kcal/mol average binding energy per dihydrogen molecule in the WH4(H2)4 complex.
Gradient-dependent approximations to the functional of the kinetic energy of non-interacting electrons (Ts[ρ]), which reflect various properties of the exact functional, are considered. For specially constructed pairs of electron densities, for which the analytic expression for the differences of Ts[ρ] is known, it is shown that the accuracy of the quantities derivable from a given approximation to Ts[ρ]: energy differences and their functional derivatives, does not reflect that of Ts[ρ] itself. The comparisons between the exact values of the kinetic energy in such cases are proposed as an independent condition/criterion for appraisal of approximations to Ts[ρ].
Synthesis of new ethynylbipyridine-linked mono- and bis-tetrathiafulvalenes: electrochemical, spectroscopic, and Ru(II)-binding studies
C. Goze, S.-X. Liu, C. Leiggener, L. Sanguinet, E. Levillain, and S. Decurtins Tetrahedron, 64 (7) (2008), p1345-1350 Keywords: Tetrathiafulvalene; Ruthenium(II) complex; Photophysical properties; Cyclic voltammetry; Donoreacceptor systems
DOI:10.1016/j.tet.2007.11.056 | unige:32 | Abstract | Article HTML | Article PDF
Two new ethynylbipyridine-linked mono- and bis-tetrathiafulvalene (TTF) derivatives, together with a Ru(II) complex, were synthesized using Sonogashira coupling reactions and characterized by UV/vis spectroscopy and cyclic voltammetry. They display a clear electrochemically amphoteric behavior consisting of two reversible single-electron oxidation waves (typical for TTF derivatives) and one reversible single-electron reduction wave (bpy) and act as donor–acceptor (D–A) systems. Furthermore, for the Ru(II) complex, a quite intense fluorescence originating from the 3MLCT state is observed.
The luminescence of Sm2+ substituting for Sr2+ or Ba2+ has been studied in SrFBr, BaFBr, BaFI and SrAlF5.
The pressure induced shifts of the intra-configurational 5D0,1 → 7F0,1,2 observed in the MFX crystals are about three times larger than those observed in ruby, confirming thus some potential of these systems as pressure sensors.
The comparison of excitation spectra in MFX shows that the position of the lowest 4f55d1 band shifts strongly to the red passing from SrFBr to BaFI. In BaFI, one observes simultaneously intra-configurational and inter-configurational emission.
The non-degenerate 5D0 → 7F0 emission of Sm2+ in SrAlF5 confirms the presence of four crystallographic sites for Sr. Site selective spectra show clear differences for the different sites. Spectra as a function of pressure reveal different pressure shifts for the different sites.
The charge recombination dynamics of excited donor−acceptor complexes consisting of hexamethylbenzene (HMB), pentamethylbenzene (PMB), and isodurene (IDU) as electron donors and tetracyanoethylene (TCNE) as electron acceptor in various polar solvents has been investigated within the framework of the stochastic approach. The model accounts for the reorganization of intramolecular high-frequency vibrational modes as well as for the solvent reorganization. All electron-transfer energetic parameters have been determined from the resonance Raman data and from the analysis of the stationary charge transfer absorption band, while the electronic coupling has been obtained from the fit to the charge recombination dynamics in one solvent. It appears that nearly 100% of the initially excited donor−acceptor complexes recombine in a nonthermal (hot) stage when the nonequilibrium wave packet passes through a number of term crossings corresponding to transitions toward vibrational excited states of the electronic ground state. Once all parameters of the model have been obtained, the influence of the dynamic solvent properties (solvent effect) and of the carrier frequency of the excitation pulse (spectral effect) on the charge recombination dynamics have been explored. The main conclusions are (i) the model provides a globally satisfactory description for the IDU/TCNE complex although it noticeably overestimates the spectral effect, (ii) the solvent effect is quantitatively well described for the PMB/TCNE and HMB/TCNE complexes but the model fails to reproduce their spectral effects, and (iii) the positive spectral effect observed with the HMB/TCNE complex cannot be described within the framework of two-level models and the charge redistribution in the excited complexes should most probably be taken into account.
Embedding a multideterminantal wave function in an orbital-free environment
Variational methods to treat a many-electron system embedded in the environment, which is represented by means of only its electron density, are considered. It is shown that the embedding operator is a local potential in the case where the electron-electron repulsion is treated exactly and the trial embedded wave function takes the multideterminantal form with a fixed number of determinants. The local embedding potential is constructed by imposing that it leads to the same electron density as the one which minimizes the Hohenberg-Kohn functional. For the limiting cases of single-determinant and configuration interaction forms of the embedded wave function, the expressions for the local embedding potential using commonly known density functionals are given. The relation between the derived local embedding potential and the effective embedding potential in the case of the embedded Kohn-Sham system [T. A. Wesołowski and A. Warshel, J. Phys. Chem. 97, 8050 (1993)] is discussed in detail.
SrMgF4 was prepared by precipitation in aqueous solution. Alkaline earth metal acetates and ammonium fluoride were used as precursors. After drying and annealing the samples at different temperatures and times, single phase SrMgF4 was obtained. By varying the annealing conditions, the mean crystallite size could be adjusted. Furthermore, the thermally treated samples displayed UV-excited intensive broad band luminescence in the visible region. The emissions colour and intensity can be adjusted by the tempering conditions. X-Ray diffraction, TEM-microscopy, fluorescence and IR-spectroscopy were used for analysis.
Americium and curium oxides AmOn and CmOn (n = 1, 2) were studied using state-of-the-art multiconfigurational, relativistic, quantum chemical methods. Spectroscopic properties for the ground state and several excited states of the four target compounds were determined. The computed dissociation energy of AmO (4.6 eV) agrees fairly well with estimates derived from experimental studies (5.73 ± 0.37 eV) while the computed dissociation energy of CmO (7.1 eV) agrees well with the experimental value (7.5 eV). The computed ionization energy of AmO (6.3 eV) is in good agreement with the current experimental value (5.9 ± 0.2 eV).
Values of σ and σ+, for use in linear free energy relationships, are determined for para hydrogen atoms having nuclear charges other than 1 (nucleomers). Hammett ρ values for a variety of free energies of activation, reaction, and other extrathermodynamic properties (e.g., vibrational frequencies) are computed therefrom and compared to those computed using typical para functional groups. The nucleomer correlations show excellent qualitative agreement with standard correlations but the quantitative agreement is less good, typically underestimating the standard ρ-value by 10-60%.
Biological homochirality on earth and its tremendous consequences for pharmaceutical science and technology has led to an ever increasing interest in the selective production, the resolution and the detection of enantiomers of a chiral compound. Chiral surfaces and interfaces that can distinguish between enantiomers play a key role in this respect as enantioselective catalysts as well as for separation purposes. Despite the impressive progress in these areas in the last decade, molecular-level understanding of the interactions that are at the origin of enantiodiscrimination are lagging behind due to the lack of powerful experimental techniques to spot these interactions selectively with high sensitivity. In this article, techniques based on infrared spectroscopy are highlighted that are able to selectively target the chiral properties of interfaces. In particular, these methods are the combination of Attenuated Total Reflection InfraRed (ATR-IR) with Modulation Excitation Spectroscopy (MES) to probe enantiodiscriminating interactions at chiral solid–liquid interfaces and Vibrational Circular Dichroism (VCD), which is used to probe the structure of chirally-modified metal nanoparticles. The former technique aims at suppressing signals arising from non-selective interactions, which may completely hide the signals of interest due to enantiodiscriminating interactions. Recently, this method was successfully applied to investigate enantiodiscrimination at self-assembled monolayers of chiral thiols on gold surfaces. The nanometer size analogues of the latter—gold nanoparticles protected by a monolayer of a chiral thiol—are amenable to VCD spectroscopy. It is shown that this technique yields detailed structural information on the adsorption mode and the conformation of the adsorbed thiol. This may also turn out to be useful to clarify how chirality can be bestowed onto the metal core itself and the nature of the chirality of the latter, which is manifested in the metal-based circular dichroism activity of these nanoparticles.
Probing chiral recognition in liquid chromatography by absolute configuration modulation ATR-IR spectroscopy
R. Wirz, D. Ferri, and A. Baiker Spectroscopy Europe, 19 (1) (2007), p8-16 unige:14678
Attenuated total reflection infrared (ATR-IR) spectroscopy in a flow-through cell was used to study the photocatalytic mineralization of malonic acid and succinic acid over P25 TiO2 in situ. The experiments were performed in water at concentrations of 1.5×10−4 mol/L and pH 3.5 at room temperature. Changes on the catalyst surface were observed within a few minutes. The first step in the mineralization of malonic acid is a photo-Kolbe reaction of adsorbed malonate. Part of the resulting C2 species is converted into oxalate and finally into carbon dioxide, and part desorbs from the surface. The branching ratio for the two pathways is 50:50. The mineralization reaction was also observed in the absence of dissolved oxygen, but at a slower rate. In the presence of dissolved 18O2, labeled oxygen was incorporated into the adsorbed oxalate. A dominant pathway in the mineralization of succinic acid involves the transformation to oxalate via malonate. Thus, it is proposed that a favored pathway for dicarboxylic acid mineralization is a photo-Kolbe reaction, followed by oxidation of the carbon-centered radical to a carboxylate, which corresponds to the overall formal shortening of the alkyl chain by one CH2 unit.
Synthesis and application of gold nanoparticles
Q.-L. Li and Xiandai Huagong (Modern Chemical Industry), 27 Suppl (2007), p378-381 unige:14664
We introduce zipper assembly as a simple and general concept to create complex functional architectures on conducting surfaces. Rigid-rod π-stack architecture composed of p-oligophenyl rods and blue naphthalenediimide (NDI) stacks is selected as an example. First, short p-quaterphenyl initiators with four anionic NDIs are deposited on gold. Then, long p-octiphenyl propagators with eight cationic NDIs are added. The lower half of the propagator π-stacks with the initiator, whereas the upper half of the molecule remains free. These cationic sticky-ends zip up with anionic propagators to produce anionic sticky-ends, and so on. Zipper assembly on gold nanoparticles is demonstrated by the appearance of the absorption of face-to-face NDI π-stacks and the shift of the surface plasmon resonance band with increasing layer thickness. Complete inhibition by zipper capping demonstrates that zipper assembly affords complex architectures that are more ordered than those obtained by conventional layer-by-layer (LBL) approaches. Zipper assembly on gold electrodes produces increasing photocurrents with increasing number of zipped layers. The photocurrents obtained by this method are much higher than those obtained by conventional LBL controls; zipper termination by capping cleanly stops any increase in photocurrent.
ESR/DFT study of bis-iminophosphorane cation radicals
A. Matni, L. Boubekeur, P. Grosshans, N. Mézailles, G. Bernardinelli, P. Le Floch and Magnetic Resonance in Chemistry, 45 (12) (2007), p1011-1017 Keywords: ESR ; DFT ; 1H ; 14N ; 31P ; hyperfine structure ; spin delocalization ; bis-iminophosphoranes ; cation radical
DOI:10.1002/mrc.2079 | unige:3578 | Abstract | Article PDF
Bis-iminophosphoranes containing various types of linkers between two R3P=N moieties were electrochemically oxidized at controlled potential in situ in the electron spin resonance (ESR) cavity. For linkers constituted of phenylenes, conjugated phenylenes or merely a dicyanoethylenic bond, this oxidation led to well-resolved ESR spectra which were characterized by their g values and by their 1H, 14N and 31P isotropic hyperfine constants. These coupling constants agree with those calculated by DFT for the corresponding cation radicals. Experimental and theoretical results clearly indicate that in these species the unpaired electron is mostly delocalized on the bridge and on the nitrogen atoms while the spin density on the phosphorus atoms is particularly small. Cyclic voltammetry and ESR spectra show that the nature of the bridge between the two iminophosphoranes considerably influences the oxidation potential of the compound as well as the stability of the radical cation. Information about the conformation of the precursor containing two Ph3P=N moieties separated by a —C(CN)=C(CN)—group was obtained from its crystal structure.
Molecular Characterization and Subcellular Localization of Macrophage Infectivity Potentiator, a Chlamydia trachomatis Lipoprotein
L. Neff, S. Daher, P. Muzzin, U. Spenato, F. Gülaçar, C. Gabay and S. Bas Journal of Bacteriology, 189 (13) (2007), p4739-4748
DOI:10.1128/JB.01889-06 | unige:3186 | Abstract | Article HTML | Article PDF
Macrophage infectivity potentiator (MIP) was originally reportedto be a chlamydial lipoprotein from experiments showing incorporationof radiolabeled palmitic acid into native and recombinant MIP;inhibition of posttranslational processing of recombinant MIPby globomycin, known to inhibit signal peptidase II; and solubilityof native MIP in Triton X-114. However, the detailed structuralcharacterization of the lipid moiety on MIP has never been fullyelucidated. In this study, bioinformatics and mass spectrometryanalysis, as well as radiolabeling and immunochemical experiments,were conducted to further characterize MIP structure and subcellularlocalization. In silico analysis showed that the amino acidsequence of MIP is conserved across chlamydial species. A potentialsignal sequence with a contained lipobox was identified, anda recombinant C20A variant was prepared by replacing the probablelipobox cysteine with an alanine. Both incorporation of U-14C-esterifiedglycerol and [U-14C]palmitic acid and posttranslational processingthat was inhibitable by globomycin were observed for recombinantwild-type MIP but not for the recombinant C20A MIP variant.The fatty acid contents of native and recombinant MIP were analyzedby gas chromatography-mass spectrometry, and the presence ofamide-linked fatty acids in recombinant MIP was investigatedby alkaline methanolysis. These results demonstrated a lipidmodification in MIP similar to that of other prokaryotic lipoproteins.In addition, MIP was detected in an outer membrane preparationof Chlamydia trachomatis elementary bodies and was shown tobe present at the surfaces of elementary bodies by surface biotinylationand surface immunoprecipitation experiments.
Optical and structural properties of a Eu(II)-doped silico-aluminate with channel structure and partial site occupation
A. Rief, F. Kubel and Zeitschrift für Naturforschung, 62b (12) (2007), p1535-1542 Keywords: disorder, structure refinement, silico-aluminate,luminescence
unige:3579 | Abstract | Article PDF
A new barium silico-aluminate phase with the stoichiometry Ba13.35(1) Al30.7 Si5.3 O70 has been found and characterized. The compound crystallizes in the space group P63 /m (No. 176) with a = 15.1683(17) Å, c = 8.8708(6) Å, V = 1767.5(4) Å3 , Z = 1, Rw = 0.026, 32 refined parameters. A 3-dimensional matrix of Al/SiO4 tetrahedra with Ba(II) ions located in channels along the c axis builds up the structure. One of these channels is partially filled with Ba(II) ions (CN 6+3) in Wyckoff position 2a, leaving ∼ 1/3 of the positions empty. The second and third type of Ba(II) ions occupy channels orientated along the c axis with CN 4+2+2 and 4+3+1, respectively. The structure shows a rare clustered arrangement of six tetrahedra filled exclusively by Al(III) and therefore is an exception to Loewenstein’s rule. The other tetrahedral positions show an Al to Si ratio of ∼ 4 : 1. The Al/Si–O bond lengths in the tetrahedral Al/Si positions drawn vs. site occupation show linear behavior similar to the prediction by Vegard’s rule for solid solutions. After doping with Eu(II) the compound shows bright orange-yellow luminescence with an unusual large shift of the Eu(II) emission band.
Dual Luminescence and Long-lived Charge Separated states in Donor-Acceptor Assemblies based on Tetrathiafulvalene Fused Ruthenium(II)-Polypyridine Complexes
C. Leiggener, N. Dupont, S.-X. Liu, C. Goze, S. Decurtins, E. Breitler and Chimia, 61 (10) (2007), p621-625
DOI:10.2533/chimia.2007.621 | unige:3580 | Abstract | Article PDF
The creation of long-lived charge-separated states in donor-acceptor assemblies has been the goal of many studies aimed at mimicking the primary processes in photosynthesis. Here we present such assemblies based on tetrathiafulvalene (TTF) as electron donor and a dipyridophenazine (dppz) unit as electron acceptor in the form of a fused ligand (TTF-dppz) coordinated to ruthenium(II) via the dipyrido coordination site and with 2,2′-bipyridine (bpy) as auxiliary ligand, namely [Ru(bpy)3−x(TTF-dppz)x]2+ (x = 1−3). For x = 2, irradiation into the metal to dppz charge transfer transition results in electron transfer from TTF to ruthenium, thus creating a charge-separated state best described by [(TTF+-dppz)Ru(dppz−-TTF)(bpy)]2+ with a lifetime of 2.5 μs in dichloromethane.
We discuss and illustrate by several examples how the ultrafast excited-state dynamics of a chromophore can be altered when changing its environment from a homogenous solution to a biological molecule such as proteins or nucleic acids.
A series of copper(I)−α-ketocarboxylate complexes have been prepared and shown to exhibit variable coordination modes of the α-ketocarboxylate ligand. Reaction with O2 induces decarboxylation of this ligand, and the derived copper−oxygen intermediate(s) has been intercepted, resulting in hydroxylation of an arene substituent on the supporting N-donor ligand. Theoretical calculations have provided intriguing mechanistic notions for the process, notably implicating hydroxylation pathways that involve novel [CuI−OOC(O)R] and [CuII−O-• ↔ CuIII = O2-]+ species.
Molecular dynamics simulations of Cm(III) in water were performed at two different temperatures, namely, T = 300 K and T = 473 K. Fully ab initio intermolecular potentials were employed. At the lower temperature, T = 300 K, nine water molecules coordinate preferentially the Cm(III) ion in the first coordination sphere, while at the higher temperature, T = 473 K, the preferential coordination number is eight instead of nine. The number of water molecules in the second coordination sphere is not uniquely defined, but the most probable number is 16.
The excited-state dynamics of the DNA intercalator YO-PRO-1 and of three derivatives has been investigated in water and in DNA using ultrafast fluorescence spectroscopy. In the free form, the singly charged dyes exist both as monomers and as H-dimers, while the doubly charged dyes exist predominantly as monomers. Both forms are very weakly fluorescent: the monomers because of ultrafast nonradiative deactivation, with a time constant on the order of 3−4 ps, associated with large amplitude motion around the methine bridge, and the H-dimers because of excitonic interaction. Upon intercalation into DNA, large amplitude motion is inhibited, H-dimers are disrupted, and the molecules become highly fluorescent. The early fluorescence dynamics of these dyes in DNA exhibits substantial differences compared with that measured with their homodimeric YOYO analogues, which are ascribed to dissimilarities in their local environment. Finally, the decay of the fluorescence polarization anisotropy reveals ultrafast hopping of the excitation energy between the intercalated dyes. In one case, a marked change of the depolarization dynamics upon increasing the dye concentration is observed and explained in terms of a different binding mode.
The topology of the ground-state potential energy surface of M(CN)6 with orbitally degenerate 2T2g (M = TiIII (t2g1), FeIII and MnII (both low-spin t2g5)) and 3T1g ground states (M = VIII (t2g2), MnIII and CrII (both low-spin t2g4)) has been studied with linear and quadratic Jahn−Teller coupling models in the five-dimensional space of the εg and τ2g octahedral vibrations (Tg⊗(εg+τ2g) Jahn−Teller coupling problem (Tg = 2T2g, 3T1g)). A procedure is proposed to give access to all vibronic coupling parameters from geometry optimization with density functional theory (DFT) and the energies of a restricted number of Slater determinants, derived from electron replacements within the t2g1,5 or t2g2,4 ground-state electronic configurations. The results show that coupling to the τ2g bending mode is dominant and leads to a stabilization of D3d structures (absolute minima on the ground-state potential energy surface) for all complexes considered, except for [Ti(CN)6]3-, where the minimum is of D4h symmetry. The Jahn−Teller stabilization energies for the D3d minima are found to increase in the order of increasing CN−M π back-donation (TiIII < VIII < MnIII < FeIII < MnII < CrII). With the angular overlap model and bonding parameters derived from angular distortions, which correspond to the stable D3d minima, the effect of configuration interaction and spin−orbit coupling on the ground-state potential energy surface is explored. This approach is used to correlate Jahn−Teller distortion parameters with structures from X-ray diffraction data. Jahn−Teller coupling to trigonal modes is also used to reinterpret the anisotropy of magnetic susceptibilities and g tensors of [Fe(CN)6]3-, and the 3T1g ground-state splitting of [Mn(CN)6]3-, deduced from near-IR spectra. The implications of the pseudo Jahn−Teller coupling due to t2g−eg orbital mixing via the trigonal modes (τ2g) and the effect of the dynamic Jahn−Teller coupling on the magnetic susceptibilities and g tensors of [Fe(CN)6]3- are also addressed.
The spin transition of the [Co(terpy)2]2+ complex (terpy = 2,2′:6′,2″-terpyridine) is analysed based on experimental data from optical spectroscopy and magnetic susceptibility measurements. The single crystal absorption spectrum of [Co(terpy)2](ClO4)2 shows an asymmetric absorption band at 14 400 cm−1 with an intensity typical for a spin-allowed d–d transition and a temperature behaviour typical for a thermal spin transition. The single crystal absorption spectra of suggest that in this compound, the complex is essentially in the high-spin state at all temperatures. However, the increase in intensity observed in the region of the low-spin MLCT transition with increasing temperature implies an unusual partial thermal population of the low-spin state of up to about 10% at room temperature. Finally, high-spin → low-spin relaxation curves following pulsed laser excitation for [Co(terpy)2](ClO4)2 dispersed in KBr discs, and as a comparison for the closely related [Co(4-terpyridone)2](ClO4)2 spin-crossover compound are given.
An unsymmetric, peripherally octasubstituted phthalocyanine (Pc) 1, which contains a combination of dipyrido[3,2-f:2‘,3‘-h] quinoxaline and 3,5-di-tert-butylphenoxy substituents, has been obtained via a statistical condensation reaction of two corresponding phthalonitriles. Synthetic procedures for the selective metalation of the macrocyclic cavity and the periphery of 1 were developed, leading to the preparation of the key precursor metallophthalocyanines 3−5 in good yields. Two different strategies were applied to the synthesis of compact dyads MPc−Ru(II) 6−8 (M = Mg(II), Co(II), Zn(II)). Intramolecular electronic interactions in these dyads were studied by absorption, emission, and transient absorption spectroscopy. Upon photoexcitation, these dyads exhibit efficient intramolecular energy transfer from the Ru(II) chromophore to the MPc moiety.
Transition Metal-and Actinide-Containing Systems Studied with Multiconfigurational Quantum Chemical Methods
L. Gagliardi
in "Reviews in Computational Chemistry"
Kenny B. Lipkowitz and Thomas R. Cundari, John Wiley & Sons, Inc., Hoboken, NJ,
25 (2007), p249-284 unige:4035
The vibrational spectra of UBz and ThBz have been measured in solid argon. Complementary quantum chemical calculations have allowed the assignments of the vibrational spectra. According to the calculations, AcBz are stable molecules, as well as other species like BzAcBz and BzAc2Bz. Experimentally, there is no evidence for the sandwich compounds BzAcBz and BzAc2Bz due to the limitations in the reagent concentrations.
Capacitively coupled contactless conductivity detection (C4D) is a new technique providing high sensitivity in capillary electrophoresis (CE) especially for small ions that can otherwise only be determined with indirect methods. In this work, direct determination and validation of valproic acid (VPA) in biological fluids was achieved using CE with C4D. VPA is of pharmacological interest because of its use in epilepsy and bipolar disorder. The running electrolyte solution used consisted of 10 mM 2-(N-morpholino)ethane sulfonic acid (MES)/dl-histidine (His) and 50 μM hexadecyltrimethylammonium bromide (HTAB) at pH 6.0. Caproic acid (CA) was selected as internal standard (IS). Analyses of VPA in serum, plasma and urine samples were performed in less than 3 min. The interference of the sample matrix was reduced by deproteinization of the sample with acetonitrile (ACN). The effect of the solvent type and ratio on interference was investigated. The limits of detection (LOD) and quantitation (LOQ) of VPA in plasma samples were determined as 24 and 80 ng/ml, respectively. The method is linear between the 2 and 150 μg/ml, covering well the therapeutic range of VPA (50–100 μg/ml).
Rearrangement of cholesta-2,4,6-triene in the presence of p-toluenesulfonic acid in acetic acid at 70 °C leads to 4-methyl-19-nor-cholesta-1,3,5(10)-triene and 1(10 → 6)-abeo-14β-cholesta-5,7,9(10)-triene in less than 2 h. Postulated mechanisms of formation of these products are supported by molecular mechanics calculations of the relative stabilities of reaction intermediates. The results suggest that Δ5,7-sterols, the most common natural precursors of triunsaturated steroidal hydrocarbons in contemporary sediments, constitute another major source for monoaromatic A and B steroids in addition to Δ5-sterols.
Interaction energies for a representative sample of 39 intermolecular complexes are calculated using two computational approaches based on the subsystem formulation of density functional theory introduced by Cortona (Phys. Rev. B44:8454, 1991), adopted for studies of intermolecular complexes (Wesolowski and Weber in Chem. Phys. Lett. 248:71, 1996). The energy components (exchange-correlation and non-additive kinetic) expressed as explicit density functionals are approximated by means of gradient-free- (local density approximation) of gradient-dependent- (generalized gradient approximation) approximations. The sample of the considered intermolecular complexes was used previously by Zhao and Truhlar to compare the interaction energies derived using various methods based on the Kohn-Sham equations with high-level quantum chemistry results considered as the reference. It stretches from rare gas dimers up to strong hydrogen bonds. Our results indicate that the subsystem-based methods provide an interesting alternative to that based on the Kohn-Sham equations. Local density approximation, which is the simplest approximation for the relevant density functionals and which does not rely on any empirical data, leads to a computational approach comparing favorably with more than twenty methods based on the Kohn-Sham equations including the ones, which use extensively empirical parameterizations. For various types of non-bonding interactions, the strengths and weaknesses of gradient-free and gradient-dependent approximations to exchange-correlation and non-additive kinetic energy density functionals are discussed in detail.
The influence of pressure on the structural and vibrational properties of a2RuH6has been investigated using periodic density functional theory calculations performed at the local density approximation (LDA) and generalized gradient approximation (GGA) levels. At ambient pressure, the calculated structure and vibrational frequencies are in satisfactory agreement with experimental data. The calculated em>P-Vcurves could be fitted with the Vinet equation of state, yielding em>B0=67.6and em>B0=58.5 GPaat the LDA and GGA levels, respectively, and em>B0′=4.0at both theoretical levels. The unit cell parameter is found to decrease faster with increasing pressure than the Ru–H bond length. The calculated pressure dependence of the vibrational frequencies agrees well with experiment for em>ν5(T2g)but not for em>ν9(A1g)
Unexpected structural complexity: Well-crystallized Mg(BH4)2 powder is obtained, allowing the structure to be determined from synchrotron X-ray and neutron diffraction data. Mg(BH4)2 is a novel and remarkably complex three-dimensional framework in which each Mg2+ ion (blue) is tetrahedrally coordinated by four [BH4]- tetrahedra (B red, H gray; see picture).
Fused Donor–Acceptor Ligands in RuII Chemistry: Synthesis, Electrochemistry and Spectroscopy of [Ru(bpy)3-n(TTF-dppz)n](PF6)2
C. Goze, C. Leiggener, S.-X. Liu, L. Sanguinet, E. Levillain, and S. Decurtins ChemPhysChem, 8 (2007), p1504-1512
DOI:10.1002/cphc.200700066 | unige:3192 | Abstract | Article HTML | Article PDF
Three ruthenium(II) polypyridine complexes of general formula [Ru(bpy)3-n(TTF-dppz)n](PF6)2 (n=1-3, bpy=2,2'-bipyridine), with one, two or three redox-active TTF-dppz (4',5'-bis(propylthio)tetrathiafulvenyl[i]dipyrido[3,2-a:2',3'-c]phenazine) ligands, were synthesised and fully characterised. Their electrochemical and photophysical properties are reported together with those of the reference compounds [Ru(bpy)3](PF6)2, [Ru(dppz)3](PF6)2 and [Ru(bpy)2(dppz)](PF6)2 and the free TTF-dppz ligand. All three complexes show intraligand charge-transfer (ILCT) fluorescence of the TTF-dppz ligand. Remarkably, the complex with n=1 exhibits luminescence from the Ru2+dppz metal-to-ligand charge-transfer (3MLCT) state, whereas for the other two complexes, a radiationless pathway via electron transfer from a second TTF-dppz ligand quenches the 3MLCT luminescence. The TTF fragments as electron donors thus induce a ligand-to-ligand charge-separated (LLCS) state of the form TTF-dppz--Ru2+→ -dppz-TTF+. The lifetime of this LLCS state is approximately 2.3 μs, which is four orders of magnitude longer than that of 0.4 ns for the ILCT state, because recombination of charges on two different ligands is substantially slower.
The excited-state dynamics of oligomeric phenyleneethynylenes (OPEs) of various length and substitution has been investigated by femtosecond time-resolved spectroscopy. The fluorescence lifetime of the OPEs decreases with the number of phenyleneethynylene units up to about 9. This effect is due to an increase of the oscillator strength for the S1–S0 transition. Dynamic features occurring within a few tens of picoseconds and ascribed to structural relaxation directly after population of the S1 state can be observed in non-viscous solvents. The effect of torsional disorder on the fluorescence intensity is shown to depend strongly on the nature of the substituent on the phenyl groups. All these effects are qualitatively discussed with a simple exciton model.
Design, synthesis and evaluation of advanced rigid-rod π-stack photosystems with asymmetric scaffolds are reported. The influence of push–pull rods on self-organization, photoinduced charge separation and photosynthetic activity is investigated and turns out to be surprisingly small overall.
The fluorescence enhancement mechanisms of a series of DNA stains of the oxazole yellow (YO) family have been investigated in detail using steady-state and ultrafast time-resolved fluorescence spectroscopy. The strong increase in the fluorescence quantum yield of these dyes upon DNA binding is shown to originate from the inhibition of two distinct processes: 1) isomerisation through large-amplitude motion that non-radiatively deactivates the excited state within a few picoseconds and 2) formation of weakly emitting H-dimers. As the H-dimers are not totally non-fluorescent, their formation is less efficient than isomerisation as a fluorescent contrast mechanism. The propensity of the dyes to form H-dimers and thus to reduce their fluorescence contrast upon DNA binding is shown to depend on several of their structural parameters, such as their monomeric (YO) or homodimeric (YOYO) nature, their substitution and their electric charge. Moreover, these parameters also have a substantial influence on the affinity of the dyes for DNA and on the ensuing sensitivity for DNA detection. The results give new insight into the development and optimisation of fluorescent DNA probes with the highest contrast.
The influence of solute−solvent interactions on the vibrational energy relaxation dynamics of perylene and substituted perylenes in the first singlet excited-state upon excitation with moderate (<0.4 eV) excess energy has been investigated by monitoring the early narrowing of their fluorescence spectrum. This narrowing was found to occur on timescales ranging from a few hundreds of femtoseconds to a few picoseconds. Other processes, such as a partial decay of the fluorescence anisotropy and the damping of a low-frequency oscillation due to the propagation of a vibrational wavepacket, were found to take place on a very similar time scale. No significant relationship between the strength of nonspecific solute−solvent interactions and the vibrational energy relaxation dynamics of the solutes could be evidenced. On the other hand, in alcohols the spectral narrowing is faster with a solute having H-bonding sites, indicating that this specific interaction tends to favor vibrational energy relaxation. No relationship between the dynamics of spectral narrowing and macroscopic solvent properties, such as the thermal diffusivity, could be found. On the other hand, a correlation between this narrowing dynamics and the number of low-frequency modes of the solvent molecules was evidenced. All these observations cannot be discussed with a model where vibrational energy relaxation occurs via two consecutive and dynamically well-separated steps, namely ultrafast intramolecular vibrational redistribution followed by slower vibrational cooling. On the contrary, the results indicate that both intra- and intermolecular vibrational energy redistribution processes are closely entangled and occur, at least partially, on similar timescales.
Intramolecular Mixed-Valence State Through Silicon or Germanium Double Bridges in Rigid Bis(Tetrathiafulvalenes)
F. Biaso, , E. Canadell, P. Auban-Senzier, E. Levillain, M. Fourmigué and N. Avarvari Chemistry - A European Journal, 13 (19) (2007), p5394-5400 Keywords: conducting materials; EPR spectroscopy; main group elements; mixed-valent compounds; tetrathiafulvalenes
DOI:10.1002/chem.200700237 | unige:3592 | Abstract | Article HTML | Article PDF
The synthesis and characterization of two ortho-dimethyltetrathiafulvalene (o-DMTTF)-based rigid dimers containing dimethylsilicon (Me2Si) or dimethylgermanium (Me2Ge) linkers are described. Single-crystal X-ray analysis reveals planar geometry for the central 1,4-disilicon or 1,4-digermanium six-membered rings. DFT calculations provide optimized conformations in agreement with the experimental ones, and also emphasize the role of the heteroatomic linkers in the conjugation between the two redox active units. Cyclic voltammetry measurements show sequential oxidation into radical cation, and then dication species. Solution EPR measurements on the radical-cation species indicate full delocalization of the unpaired electron over both electroactive TTF units, with an associated coupling of 0.42 G with twelve equivalent protons. DFT calculations afford fully planar geometry for the radical-cation species and confirm the experimental isotropic coupling constant. Single-crystal X-ray analyses of two charge-transfer compounds obtained upon chemical oxidation, formulated as [(Me2Si)2(o-DMTTF)2]-1/2[TCNQ]·1/2[TCNQF4] and [(Me2Ge)2(o-DMTTF)2]·[TCNQ], demonstrate the occurrence of genuine mixed-valence radical-cation species, as well as a three-dimensional network of short S···S intermolecular contacts. Temperature-dependent conductivity measurements demonstrate semiconducting behavior for both charge-transfer compounds, with an increase of the absolute value of the conductivity upon applying external pressure. Band structure calculations reveal peculiar pseudo-two-dimensional electronic structures, also confirming electronic interactions through SiMe2 and GeMe2 bridges.
Hohenberg-Kohn-Sham Density Functional Theory: The formal basis for a family of succesful and still evolving computational methods for modelling interactions in complex chemical systems
in "Molecular Materials with Specific Interactions: Modeling and Design"
A.W. Sokalski, Ed., Springer Verlag,
(2007), p153-202
DOI:10.1007/1-4020-5372-X | unige:4034
The emergence of a family of computational methods, known under the label ‘density functional theory∈dex theory! density functional ’ or ‘DFT’, revolutionalized the field of computer modelling of complex molecular systems. Many computational schemes belonging to the DFT family are currently in use. Some of them are designed to be universal (nonempirical) whereas other to treat specific systems and/or properties (empirical). This review starts with the introduction of the formal elements underlying all these methods: Hohenberg-Kohn theorems∈dex theorem! Hohenberg-Kohn , reference system∈dex reference system of noninteracting electrons∈dex reference system! noninteracting electrons , exchange-correlation energy∈dex energy functional! exchange-correlation functional∈dex functional , and the Kohn-Sham equations∈dex equation! Kohn-Sham . The main roads to approximate the exchange-correlation-energy functional based on: local density approximation∈dex approximation! local density (LDA), generalized gradient approximation∈dex approximation! generalized gradient (GGA), meta-GGA∈dex energy functional! exchange-correlation! meta-GGA , and adiabatic connection∈dex adiabatic connection formula (hybrid functionals∈dex energy functional! exchange-correlation! hybrid ), are outlined. The performance of these approximations in describing molecular properties of relevance to intermolecular interaction∈dex interactions! intermolecular s and their interactions with environment in condensed phase (ionization potential∈dex potential! ionization s, electron∈dex electron affinities∈dex electron! affinity , electric moments∈dex electric moment , polarizabilities∈dex polarizability ) is reviewed. Developments concerning new methods situated within the general Hohenberg-Kohn-Sham framework or closely related to it are overviewed in the last section
The subsystem formulation of density functional theory is used to obtain equilibrium geometries and interaction energies for a representative set of noncovalently bound intermolecular complexes. The results are compared with literature benchmark data. The range of applicability of two considered approximations to the exchange-correlation- and nonadditive kinetic energy components of the total energy is determined. Local density approximation, which does not involve any empirical parameters, leads to excellent intermolecular equilibrium distances for hydrogen-bonded complexes (maximal error 0.13 Å for NH3−NH3). It is a method of choice for a wide class of weak intermolecular complexes including also dipole-bound and the ones formed by rare gas atoms or saturated hydrocarbons. The range of applicability of the chosen generalized gradient approximation, which was shown in our previous works to lead to good interaction energies in such complexes, where π-electrons are involved in the interaction, remains limited to this group because it improves neither binding energies nor equilibrium geometries in the wide class of complexes for which local density approximation is adequate. An efficient energy minimization procedure, in which optimization of the geometry and the electron density of each subsystem is made simultaneously, is proposed and tested.
The excited-state dynamics of a series of electron donor−acceptor bridged systems (DABS) consisting of a boron−dipyrromethene chromophore covalently linked to a dinitro-substituted triptycene has been investigated using femtosecond time-resolved spectroscopy. The chromophores differ by the number of bromine atom substituents. The fluorescence lifetime of the DABS without any bromine atom is strongly reduced when going from toluene to polar solvents, this shortening being already present in chloroform. This effect is about 10 times weaker with a single bromine atom and negligible with two bromine atoms on the chromophore. The excited-state lifetime shortening is ascribed to a charge transfer from the excited chromophore to a nitrobenzene moiety, the driving force of this process depending on the number of bromine substituents. The occurrence of this process is further confirmed by the investigation of the excited-state dynamics of the chromophore alone in pure nitrobenzene. Surprisingly, no correlation between the charge separation time constant and the dielectric properties of the solvents could be observed. However, a good correlation between the charge separation time constant and the diffusional reorientation time of the chromophore alone, measured by fluorescence anisotropy, was found. Quantum chemistry calculations suggest that quasi-free rotation about the single bond linking the chromophore to the triptycene moiety permits a sufficient coupling of the donor and the acceptor to ensure efficient charge separation. The charge separation dynamics in these molecules is thus controlled by the reorientational motion of the donor relative to the acceptor.
[M(CO)4PPh3]•− (M = Mo, W) were trapped at 77 K in X-irradiated single crystals of M(CO)5PPh3 and studied by EPR. Structures of [M(CO)4PPh3]•− (M = Cr, Mo, W) were optimized by DFT; predicted g and 31P-hyperfine tensors agree with experiments for M = Mo, W. The anions adopt a slightly distorted pyramidal structure with PPh3 in basal position and the spin mostly delocalized in a metal-dz2 orbital and carbon-pz orbitals of carbonyls. The EPR tensors are slightly modified by annealing, they suggest that new constraints in the matrix distort the structure of [M(CO)4PPh3]•− (M = Cr, Mo, W).
The incorporation of enantiopure 1-amino-2,3-propanediol as a subcomponent into a dicopper double helicate resulted in perfect chiral induction of the helicate's twist. DFT calculations allowed the determination of the helicity of the complex in solution. The same helical induction, in which S amines induced a Λ helical twist, was observed in the solid state by X-ray crystallography. Electronic structure calculations also revealed that the unusual deep green color of this class of complexes was due to a metal-to-ligand charge transfer excitation, in which the excited state possesses a valence delocalized Cu23+ core. The use of a racemic amine subcomponent resulted in the formation of a dynamic library of six diastereomeric pairs of enantiomers. Surprisingly, this library converted into a single pair of enantiomers during crystallization. We were able to observe this process reverse upon redissolution, as initial ligand exchange was followed by covalent imine metathesis.
Wedescribe an advanced setup for time-resolved x-ray absorption fine structure(XAFS) Spectroscopy with picosecond temporal resolution. It combines an intensefemtosecond laser source synchronized to the x-ray pulses delivered intothe microXAS beamline of the Swiss Light Source (SLS). Thesetup is applied to measure the short-lived high-spin geometric structureof photoexcited aqueous Fe(bpy)3 at room temperature.
An Experimental and Computational Study on Intramolecular Charge Transfer: A Tetrathiafulvalene Fused Dipyridophenazine Molecule
C. Jia, S.-X. Liu, C. Tanner, C. Leiggener, A. Neels, L. Sanguinet, E. Levillain, S. Leutwyler, and S. Decurtins Chemistry - A European Journal, 13 (13) (2007), p3804-3812 Keywords: charge transfer; donor-acceptor systems; nitrogen heterocycles; photophysical properties; tetrathiafulvalene
DOI:10.1002/chem.200601561 | unige:3597 | Abstract | Article HTML | Article PDF
To study the electronic interactions in donor-acceptor (D-A) ensembles, D and A fragments are coupled in a single molecule. Specifically, a tetrathiafulvalene (TTF)-fused dipyrido[3,2-a:2',3'-c]phenazine (dppz) compound having inherent redox centers has been synthesized and structurally characterized. Its electronic absorption, fluorescence emission, photoinduced intramolecular charge transfer, and electrochemical behavior have been investigated. The observed electronic properties are explained on the basis of density functional theory.
The fluorine superhyperfine (shf) tensor measured in aFCl:La2+has been found to be practically isotropic, a result which is certainly anomalous when compared to that for em>d9centers with one unpaired electron in a em>x2−y2orbital. This puzzling fact has been explored by means of density functional calculations. Obtained results confirm that in the em>C4vequilibrium geometry the unpaired electron lies in a em>b1(∼x2−y2)orbital which overlaps with the sorbitals of four −ligands. For explaining the origin of the near isotropy, which is well reproduced by the present calculations, the simple em>D4hand i>C4vaF42− F42− and gF42−centers have also been investigated. Although the obtained results stress the high dependence of the isotropic shf constant i>Ason the metal-ligand distance i>R a near isotropy of the shf tensor is only reached for aF42−(but not for F42− under i>C4vsymmetry which corresponds to the actual symmetry of the a2+center in the BaFCl lattice. The origin of this peculiar situation is shown to come from the mixing between dand forbitals of a2+allowed in i>C4vsymmetry thus stressing the role played by forbitals in bonding properties. Writing i>As=CR−nsit is shown that for the i>D4haF42−and F42−complexes the exponent i>nsis around 20, while it is only equal to 4 for gF42− This huge difference is shown to stem from the quite distinct slope of the radial i>dwave function at the equilibrium distance for the two i>d1centers and the i>d9gF42−unit. Finally, the present calculations strongly support that the intense band peaked at 7 890 cm−1recorded in the optical absorption spectrum of aFCl:La2+is indeed a d→4ftransition.
Several monouranium and diuranium polyhydride molecules were investigated using quantum chemical methods. The infrared spectra of uranium and hydrogen reaction products in condensed neon and pure hydrogen were measured and compared with previous argon matrix frequencies. The calculated molecular structures and vibrational frequencies were used to identify the species present in the matrix. Major new absorptions were observed and compared with the previous argon matrix study. Spectroscopic evidence was obtained for the novel complex, UH4(H2)6, which has potential interest as a metal hydride with a large number of hydrogen atoms bound to uranium. Our calculations show that the series of complexes UH4(H2)1,2,4,6 are stable.
Tuning the Polarization Along Linear Polyaromatic Strands for Rationally Inducing Mesomorphism in Lanthanide Nitrate Complexes
E. Terazzi, L. Guénée, , G. Bernardinelli, B. Donnio, D. Guillon and C. Piguet Chemistry - A European Journal, 13 (6) (2007), p1674-1691 Keywords: electrostatic potentials; intermolecular interactions; lanthanides; liquid crystals; metallomesogens
DOI:10.1002/chem.200601389 | unige:3599 | Abstract | Article HTML | Article PDF
The opposite orientation of the ester spacers in the rodlike ligands L 4C12 (benzimidazole-OOC-phenyl) and L 5C12 (benzimidazole-COO-phenyl) drastically changes the electronic structure of the aromatic systems, without affecting their meridional tricoordination to trivalent lanthanides, LnIII, and their thermotropic liquid crystalline (i.e., mesomorphic) behaviors. However, the rich mesomorphism exhibited by the complexes [Ln(L 4C12)(NO3)3] (Ln=La-Lu) vanishes in [Ln(L 5C12)(NO3)3], despite superimposable molecular structures and comparable photophysical properties. Density functional theory (DFT) and time-dependant DFT calculations performed in the gas phase show that the inversion of the ester spacers has considerable effects on the electronic structure and polarization of the aromatic groups along the strands, which control residual intermolecular interactions responsible for the formation of thermotropic liquid-crystalline phases. As a rule of thumb, an alternation of electron-poor and electron-rich aromatic rings favors intermolecular interactions between the rigid cores and consequently mesomorphism, a situation encountered for L 4C12, L 5C12, [Ln(L 4C12)(NO3)3], but not for [Ln(L 5C12)(NO3)3]. The intercalation of an additional electron-rich diphenol ring on going from [Ln(L 5C12)(NO3)3] to [Ln(L 6C12)(NO3)3] restores mesomorphism despite an unfavorable orientation of the ester spacers, in agreement with our simple predictive model.
Ab initio static and molecular dynamics study of 4-styrylpyridine: Structure, energy and reactivity of the cis and trans isomers in the ground state
, J. Linares and M.-L. Boillot ChemPhysChem, 8 (9) (2007), p1402-1416 Keywords: ab initio calculations; density functional calculations; isomerization; molecular dynamics; transition states
DOI:10.1002/cphc.200700117 | unige:3195 | Abstract | Article HTML | Article PDF
We report an in-depth theoretical study of 4-styrylpyridine in its singlet S0 ground state. The geometries and the relative stabilities of the trans and cis isomers were investigated within density functional theory (DFT) as well as within Hartree-Fock (HF), second-order Møller-Plesset (MP2), and coupled cluster (CC) theories. The DFT calculations were performed using the B3LYP and PBE functionals, with basis sets of different qualities, and gave results that are very consistent with each other. The molecular structure is thus predicted to be planar at the energy minimum, which is associated with the trans conformation, and to become markedly twisted at the minimum of higher energy, which is associated with the cis conformation. The results of the calculations performed with the post-HF methods approach those obtained with the DFT methods, provided that the level of treatment of the electronic correlation is high enough and that sufficiently flexible basis sets are used. Calculations carried out within DFT also allowed the determination of the geometry and the energy of the molecule at the biradicaloid transition state associated with the thermal cis ↔trans isomerization and at the transition states associated with the enantiomerization of the cis isomer and with the rotations of the pyridinyl and phenyl groups in the trans and cis isomers. Car-Parrinello molecular dynamics simulations were also performed at 50, 150, and 300 K using the PBE functional. The studies allowed us to evidence the highly flexible nature of the molecule in both conformations. In particular, the trans isomer was found to exist mainly in a nonplanar form at finite temperatures, while the rotation of the pyridinyl ring in the cis isomer was incidentally observed to take place within ≈1 ps during the simulation carried out at 150 K on this isomer.
The ground state properties and absorption spectra of N-benzylideneaniline (NBA) have been studied at the density functional (DFT) and at the time-dependent density functional (TD-DFT) level of the theory. The equilibrium geometries of the E and Z isomers in the ground state and their vibrational frequencies have been computed. Furthermore, the excitation energies of the lowest excited singlet and triplet states and the potential energy curves along the torsion and the inversion isomerization coordinates were evaluated. The results are discussed in light of the available experimental data.
We argue with Kryachko's criticism [Int J Quantum Chem 2005, 103, 818] of the original proof of the second Hohenberg-Kohn theorem. The Kato cusp condition can be used to refute a "to-be-refuted" statement as an alternative to the original proof by Hohenberg and Kohn applicable for Coulombic systems. Since alternative ways to prove falseness of the "to-be-refuted" statement in a reduction ad absurdum proof do not exclude each other, Kryachko's criticism is not justified.
The ground and excited electronic state properties of calicene (triapentafulvalene or 5-(cycloprop-2-en-1-ylidene)cyclopenta-1,3-diene) have been studied with a variety of density functional models (mPWPW91, PBE, TPSS, TPSh, B3LYP) and post-Hartree−Fock models based on single (MP2 and CCSD(T)) and multideterminantal (CASPT2) reference wave functions. All methods agree well on the properties of ground-state calicene, which is described as a conjugated double bond system with substantial zwitterionic character deriving from a charge-separated mesomer in which the three- and five-membered rings are both aromatic. Although the two rings are joined by a formal double bond, contributions from the aromatic mesomer reduce its bond order substantially. A rotational barrier of 40−41 kcal mol-1 is predicted in the gas phase and solvation effects reduce the barrier to 37 and 33 kcal mol-1 in benzene and water, respectively, because of increased zwitterionic character in the twisted transition-state structure. Multi-state CASPT2 (MS-CASPT2) is used to characterize the first few excited singlet and triplet states and indicates that the most important transition occurs at 4.93 eV (251 nm). A cis−trans photoisomerization about the inter-ring double bond is found to be inefficient.
Structural changes of the iron(II)-tris-bipyridine ([FeII(bpy)3]2+) complex induced by ultrashort pulse excitation and population of its short-lived (≤0.6 ns) quintet high spin state have been detected by picosecond x-ray absorption spectroscopy. The structural relaxation from the high spin to the low spin state was followed over the entire lifetime of the excited state. A combined analysis of the x-ray-absorption near-edge structure and extended x-ray-absorption fine structure spectroscopy features delivers an Fe-N bond elongation of 0.2 Å in the quintet state compared to the singlet ground state.
We present novel insight on like-spin domains (LSD) in cooperative spin transition solids by following the photo-transformation and the subsequent relaxation of a [Fe(ptz)6](BF4)2 single crystal in the vicinity of the light-induced instability. Self-organization under light is observed, accompanied by Barkhausen-like noise and jumps which reveal the presence of elastic interactions between LSDs. The light-induced phase separation process is discussed in terms of a dynamic potential providing spinodal instability in the corresponding temperature range. This useful concept is applicable to all types of switchable molecular solids.
Maxing out at six: The maximum bond order that can be achieved between two equal atoms in the periodic system is six. The picture shows the potential energy curves for the diatoms Cr2, Mo2, and W2, where the latter two are sextuply bonded molecules (d=internuclear distance in atomic units).
Recent advances in computational actinide chemistry are reported in this tutorial review. Muticonfigurational quantum chemical methods have been employed to study the gas phase spectroscopy of small actinide molecules. Examples of actinide compounds studied in solution are also presented. Finally the multiple bond in the diuranium molecule and other diactinide compounds is described.
The endohedral fullerene CH4@C84 has been studied using density functional theory (DFT) and second-order Møller-Plesset perturbation theory (MP2). In addition to the structure with a C— bond of CH4 in a tetrahedral pocket conformation, we find an alternative minimum, very close in energy (6.3-9.5 kJ/mol higher according to the level of theory), with the methane inverted, which we call the antipocket conformation. Computed IR spectra are reported for CH4@C84 and also for the reference system CH4@C60. The calculated vibrational levels, in a harmonic approximation, reveal close-lying translational, librational, and shell-vibrational modes. The results are also presented for the isoelectronic species NH4+@C60.
Single crystal dixanthinium tetrachlorozincate has been grown from dilute chloridric acid. Polarized Raman spectrum of the single crystalline sample, FT-Raman and FT-IR spectra of the polycrystalline samples have been examined and the bands assigned to the appropriate modes predicted by a factor group analysis for the space group Pmn21. The crystal structure has been confirmed by powder XRD measurements.
Mixed single PbFBr1−xIx crystals have been prepared. X-ray powder diffraction structure determinations show that all samples crystallize with the matlockite structure. However, the single crystal structure of PbFBr0.5I0.5 involves not only fractional occupation of one site corresponding to the stoichiometry, but also split positions of the Pb2+ ion. Raman spectra reveal the presence of new additional bands with respect to PbFBr and PbFI. DFT calculations of lattice vibrations for PbFI show good agreement with experimental spectra. The calculated phonon dispersion curve suggests that for the mixed crystals the centre of inversion is conserved locally. These combined results suggest the presence of domains with ordered F–Pb–Br–Br–Pb–F and F–Pb–I–I–Pb–F layers in the mixed crystals. Calculations on PbFBr0.5I0.5 show that this suggested structure is more stable than the structure consisting of the F–Pb–Br–I–Pb–F arrangement.
Whereas there are hundreds of known iron(II) spin-crossover compounds, only a handful of cobalt(II) spin-crossover compounds have been discovered to date, and hardly an in depth study on any of them exists. This review begins with an introduction into the theoretical aspects to be considered when discussing spin-crossover compounds in general and cobalt(II) systems in particular. It is followed by case studies on [Co(bpy)3]2+ and [Co(terpy)2]2+ (bpy = 2,2′-bipyridine, terpy = 2,2′:6′,2″-terpyridine) presenting and discussing results from magnetic susceptibility measurements, X-ray crystallography, optical spectroscopy, and EPR spectroscopy.
2006
Enantiodiscrimination between an N-acetyl-L-cysteine SAM and proline: an in situ spectroscopic and computational study
M. Bieri and ChemPhysChem, 7 (2) (2006), p514-523 Keywords: chirality; density functional calculations; enantioselectivity; IR spectroscopy; self-assembly
DOI:10.1002/cphc.200500474 | unige:14692 | Abstract | Article PDF
A combination of attenuated total reflection infrared (ATR-IR) and modulation excitation spectroscopy (MES) is used to study the enantiodiscriminating interactions between proline and a chiral, self-assembled monolayer (SAM) of N-acetyl-L-cysteine on gold. The N-acetyl-L-cysteine SAM consists of a mixture of protonated and deprotonated molecules. Whereas both species are influenced by adsorbed proline, only the deprotonated molecules are involved in enantiodiscrimination. Density functional theory (DFT) calculations reveal that electrostatics dominates the interaction between the two molecules. By modulating the absolute configuration of proline over the chiral SAM, and a subsequent phase-sensitive detection of the periodically varying signals in the ATR-IR spectra, the small spectral differences between the diastereomeric complexes are spotted. The resulting difference spectrum is in qualitative agreement with the spectrum predicted by the DFT calculations.
Ferrocene-containing optically active liquid-crystalline side-chain polysiloxanes with planar chirality
J. Brettar, , B. Donnio, D. Guillon, R. Klappert, T. Scharf and R. Deschenaux Advanced Functional Materials, 16 (2) (2006), p260-267 Keywords: Chiral polymers; Liquid crystals; Optically active materials; Polysiloxanes
DOI:10.1002/adfm.200500223 | unige:14766 | Abstract | Article PDF
Optically active liquid-crystalline side-chain polysiloxanes have been prepared by grafting planar chiral ferrocene-based vinyl monomers onto commercially available polyhydrosiloxane. Two ferrocene monomers have been synthesized: a linear-type monomer, which displays a monotropic chiral smectic C (SC*) phase and enantiotropic smectic A (SA) and chiral N (N*) phases, and a laterally branched monomer, which shows an enantiotropic N* phase. X-ray diffraction analysis indicates a monomolecular organization of the monomeric units within the smectic layers. The polymers retain the liquid-crystalline phases of their corresponding monomers. The UV-vis and circular dichroism (CD) spectra are in agreement with the structure of the monomers and polymers. The molar absorption coefficient (ϵ) and molar circular dichroic absorption coefficient (Δϵ) values of the polymers are proportional to the number of monomeric units grafted onto them. The absolute configuration of the ferrocene carboxylic acid intermediate, used to synthesize the monomers, has been determined on the basis of CD spectra. The helical twisting power (HTP) of the nematogenic monomer and polymer have been determined in E7, and indicate that such materials could be used as chiral dopants. Finally, this study demonstrates that the nature of chiral phases can be controlled by structural engineering of the organic groups only, with ferrocene acting as the source of chirality.
Simultaneous in situ monitoring of surface and gas species and surface properties by modulation excitation polarization-modulation infrared reflection-absorption spectroscopy: CO oxidation over Pt film
A. Urakawa, , H.-P. Schläpfer and A. Baiker Journal of Chemical Physics, 124 (5) (2006), p54717-11
DOI:10.1063/1.2159484 | unige:14673 | Abstract | Article HTML | Article PDF
A method for in situ monitoring of surface and gas species utilizing separately the difference and sum reflectivity of two polarizations, normal and parallel to the surface, measured by polarization-modulation infrared reflection-absorption spectroscopy is presented. Surface and gas-phase spectra were separately but simultaneously obtained from the reflectivities. The technique is combined with modulation excitation spectroscopy to further enhance the sensitivity, and a small-volume cell was designed for this purpose. CO oxidation over a 40 nm Pt film on aluminum was investigated under moderate pressure (atmospheric pressure, 5% CO, and 5%–40% O2) at 373–433 K. The surface species involved in the oxidation process and the gas-phase species, both reactant (CO) and product (CO2), could be simultaneously monitored and analyzed quantitatively. In addition, the reflectivity change of the sample during the reaction was assigned to a near-surface bulk property change, that is, surface reconstruction to the oxide phase. Under an O2-rich atmosphere, two reactive phases, denoted as low- and high-activity phases, were identified. A large amount of atop CO was observed during the low-activity phase, while the adsorbed CO completely disappeared during the high-activity phase. The presence of an infrared-inactive CO2 precursor formed by the reaction between surface oxide and gaseous CO during the high-activity phase was inferred. The desorption of the CO2 precursor is facilitated under a CO-rich atmosphere, most likely, by surface reconstruction to metallic Pt and a competitive adsorption of CO on the surface.
The adsorption of L-glutathione (γ-Glu-Cys-Gly) from ethanol on gold surfaces was studied in situ by both attenuated total reflection infrared (ATR-IR) spectroscopy and using a quartz crystal microbalance (QCM). The molecule is firmly anchored to the gold surface through the thiol group. Different IR signals of adsorbed L-glutathione, notably the amide I and ν(–COOH), show significantly different behavior with time, which reveals that their increase is not related to adsorption (mass uptake) alone. This indicates that structural transformations take place during the formation of the self-assembled monolayer (SAM). In particular, the intensity of the acid signal increases quickly only within the first couple of minutes. The complexity of the self-assembling process is confirmed by QCM measurements, which show fast mass uptake within about 100 s followed by a considerably slower regime. The structural change superimposed on the mass uptake is, based on the in situ time-resolved ATR-IR measurements, assigned to the interaction of the acid group of the Gly moiety with the surface. The latter group is protonated in ethanol but deprotonates upon interaction with the gold surface. The protonation–deprotonation equilibrium is sensitive to external stimuli, such as the presence of dissolved L-glutathione molecules. The interaction of the acid group with the surface and concomitant deprotonation proceeds via two distinguishable steps, the first being a reorientation of the molecule, followed by the deprotonation.
Square-wave stimulation used in modulation excitation spectroscopy [D. Baurecht, U.P. Fringeli, Rev. Sci. Instrum. 72 (2001) 3782] can have significant advantages over a simple sinusoidal-wave due to the high odd-frequency terms contained in square-wave, particularly when a system response is close to linear. Phase-sensitive detection (PSD) affords separating the signals of the different frequency terms with a high signal-to-noise ratio by averaging a number of modulation cycles. A modulation excitation experiment applying square-wave stimulation provides the same information as several experiments applying sinusoidal-wave stimulations at the same frequency as the square-wave stimulation and at higher frequencies. The amplitude and the phase lag of a response obtained by PSD at fundamental and higher frequencies using square-wave stimulation are related to the ones obtained by sinusoidal-wave stimulation using transfer function of a general system. Mixing property of a PM-IRRAS (polarization–modulation infrared reflection–absorption spectroscopy) flow-through cell was studied by a simple mixing tank model using square-wave concentration stimulation. The advantages of square-wave stimulation are shown by the characterization of the mixing property.
Modulation Excitation PM-IRRAS: A New Possibility for Simultaneous Monitoring of Surface and Gas Species and Surface Properties
A. Urakawa, and A. Baiker Chimia, 60 (4) (2006), p231-233 Keywords: co oxidation; fas-solid interface; in situ spectroscopy; modulation excitation spectroscopy; pm-irras
DOI:10.2533/000942906777674949 | unige:14687 | Abstract
Polarization-modulation infrared reflection-absorption spectroscopy (Pm-irras) is a sensitive tool for the analysis of species residing at gas-solid and gas-liquid interfaces. the polarization-modulation allows excellent back-ground compensation and the analysis of surface/interface species under moderate pressure (e.g. atmospheric pressure of ir-absorbing gases) is possible. we demonstrate a new possibility to extract simultaneously information of gas and solid phases in addition to surface species from the Pm-irras experiments, using co oxidation over Pt film as an example. modulation excitation spectroscopy (mes) has been combined with this technique to enhance the sensitivity and to analyze the kinetic behavior of species. the surface species involved in the oxidation process, the state of Pt, and the gas phase species (co and co2) could be simultaneously monitored in situ and analyzed quantitatively. the technique can serve as a valuable tool for investigations of various dynamic phenomena occurring at gas-solid interfaces.
Chromatographic Resolution, Solution and Crystal Phase Conformations, and Absolute Configuration of tert-Butyl(dimethylamino)phenylphosphine-Borane Complex
J.-V. Naubron, L. Giordano, F. Fotiadu, , N. Vanthuyne, C. Roussel and G. Buono Journal of Organic Chemistry, 71 (15) (2006), p5586-5593
DOI:10.1021/jo0605647 | unige:14781 | Abstract | Article HTML | Article PDF
The enantiomers of tert-butyl(dimethylamino)phenylphosphine−borane complex 2 have been separated by HPLC using cellulose tris-p-methylbenzoate as chiral stationary phase. The borane protection could be removed without racemization and the P-configuration of the free aminophosphine 1 has shown to be stable in solution. Infrared (IR) and vibrational circular dichroism (VCD) spectra have been measured in CD2Cl2 solution for both enantiomers. B3LYP/6-31+G(d) DFT calculations allowed a prediction that complex (S)-2 exists as three conformers in equilibrium and computed population-weighted IR and VCD spectra. Predicted and experimental IR and VCD spectra compared very well and indicate that enantiomer (+)-2 has the S absolute configuration. This assignment has been confirmed by an X-ray diffraction study on a single crystal of (+)-2. The crystal structure of enantiomerically pure 2 appears to be very close to the most stable computed conformer which proved to be predominant in solution.
The photoassisted mineralization, i.e., conversion to CO2 and water, of malonic acid over P25 TiO2 was investigated by in situ attenuated total reflection infrared (ATR-IR) spectroscopy in a small volume flow-through cell. Reassignment of the vibrational bands of adsorbed malonic acid, assisted by deuterium labeling, reveals two dissimilar carboxylate groups within the molecule. This indicates adsorption via both carboxylate groups, one in a bridging or bidentate and the other in monodentate coordination. During irradiation the coverage of malonic acid strongly decreases, and oxalate is observed on the surface in at least two different adsorption modes. The major oxalate species observed during irradiation is characterized by monodentate coordination of both carboxylate groups. In the dark, however, part of these species adopts another adsorption mode, possibly interacting only with one carboxylate group. During band gap illumination a large fraction of the surface is not covered by acid. Oxalate is a major intermediate in the mineralization of malonic acid. However, the observed transient kinetics of adsorbed malonic and oxalic acid indicates additional pathways not involving oxalate. The rate constant for oxalate decomposition is slightly larger than the one for oxalate formation from malonic acid. As the oxalate is desorbing slowly from the surface its concentration in the liquid phase is small, despite the fact that it is a major intermediate in the mineralization of malonic acid.
We have prepared gold nanoparticles covered with N-isobutyryl-l-cysteine and N-isobutyryl-d-cysteine, respectively. These particles with a mean particle size smaller than 2 nm are highly soluble in water and are amenable to chiroptical techniques such as vibrational circular dichroism (VCD) and circular dichroism (CD) spectroscopy. Density functional theory shows that the VCD spectra are sensitive toward the conformation of the adsorbed thiol. Based on the comparison between the experimental VCD spectrum and the calculated VCD spectra for different conformers, a preferential conformation of the thiol adsorbed on the gold particles can be proposed. In this conformation the carboxylate group interacts with the gold particle in addition to the sulfur. The particles could furthermore be separated according to their charge and size into well-defined compounds. The optical absorption spectra revealed a well-quantized electronic structure and a systematic red-shift of the absorption onset with increasing gold core size, which was manifested in a color change with particle size. Some compounds showed basically identical absorption spectra as analogous gold particles protected with l-glutathione. This shows that these particles have identical core sizes (10−12, 15 and 18 gold atoms, respectively) and indicates that the number and arrangement of the adsorbed thiol are the same, independent of the two thiols, which have largely different sizes. Some separated compounds show strong optical activity with opposite sign when covered with the d- and l-enantiomer, respectively, of N-isobutyryl-cysteine. The origin of the optical activity in the metal-based transitions is discussed. The observations are consistent with a mechanism based on a chiral footprint on the metal core imparted by the adsorbed thiol.
The adsorption of penicillamine from ethanol on gold was studied in situ by attenuated total reflection infrared (ATR-IR) and quartz crystal microbalance (QCM) experiments. Both ATR-IR and QCM reveal a fast mass uptake. In ethanol, the molecule adopts a zwitterionic form. Upon adsorption, part of the molecules deprotonate at the amine group, which is a relatively slow process that goes along with a strong shift of the νas(COO-) mode. Both ATR-IR and QCM confirm a physisorbed layer. ATR-IR furthermore shows that the latter consists of zwitterionic molecules only, whereas both zwitterionic and anionic species are found in the chemisorbed layer. The infrared spectra of the physisorbed and chemisorbed layers are rather different, and the molecules within both layers seem to be oriented with respect to the surface. The ATR-IR spectra furthermore indicate that all three functional groups of penicillamine (i.e., thiol, carboxylate, and amine) interact with the surface, and density functional theory calculations support this finding. QCM also shows that the molecule uses considerably more space on the surface than molecules of similar size, which supports a three-point interaction. The latter leads to a strong anchoring of the molecule to the metal, which may explain the exceptional capability of penicillamine to bind metals.
Probing Chiral Nanoparticles and Surfaces by Infrared Spectroscopy
C. Gautier, M. Bieri, , S. Angeloni, J. Boudon and Chimia, 60 (11) (2006), p777-782 Keywords: chiral surfaces; enantiodiscrimination; nanoparticles; sams; vibrational circular dichroism
DOI:10.2533/chimia.2006.777 | unige:14749
Chiral metal surfaces and nanoparticles have the potential to be used for the selective production, the resolution and the detection of enantiomers of a chiral compound, which renders them highly attractive in view of the tremendous consequences of homochirality on earth. Their capability to distinguish between enantiomers of a chemical compound relies on their structure and the ability to form intermolecular interactions. However, molecular-level understanding of the interactions that are at the origin of enantiodiscrimination is lagging behind due to the lack of powerful experimental techniques that are able to spot these interactions selectively with high sensitivity. In this article two techniques based on infrared spectroscopy are presented that are able to selectively target the chiral properties of nanoparticles and interfaces. These are the combination of attenuated total reflection infrared (ATR-IR) with modulation excitation spectroscopy (MES) to probe enantiodiscriminating interactions at chiral solid-liquid interfaces and vibrational circular dichroism (VCD), which is used to probe the structure of chirally modified metal nanoparticles.
Attenuated Total Reflection Infrared Spectroscopy of Solid Catalysts Functioning in the Presence of Liquid-Phase Reactants
and A. Baiker
in "Advances in Catalysis"
Ed. by H. Knüpffer, Academic Press,
50 (2006), p227-283
DOI:10.1016/S0360-0564%2806%2950005-7 | unige:14641 | Article HTML | Article PDF
Attenuated total reflection (ATR) infrared (IR) spectroscopy is a powerful tool for investigation of solid catalysts, allowing the detection of liquid-phase products (for on-line reaction monitoring) and the investigation of species adsorbed on the catalyst, during reaction and in the presence of strongly absorbing solvents. Flat model catalysts such as metal films as well as powder catalysts can be investigated. In favorable situations, even changes of the catalyst structure can be followed. In this review, some fundamental concepts of ATR spectroscopy are summarized, and practical aspects, such as cell design and sample preparation, are discussed. The potential and limitations of the method are illustrated with examples. Furthermore, powerful techniques aimed at enhancing signal-to-noise ratios and long-term stability are described, which make use of phase-sensitive detection of periodically varying signals and accurate reference measurements. Until now, only a rather limited number of investigations have been reported that use the ATR technique to study heterogeneous catalytic reactions at solid–liquid interfaces, but the method holds good promise because it is comparatively inexpensive and versatile and can provide a large amount of information.
Density functional theory (DFT) has progressively emerged in the last 40 years as a leading methodology for the modelling and simulation of chemical systems. In this paper, some historical landmarks in the development of this method are outlined, emphasizing on its main characteristic being an electron density-based theory. This is in contrast with wavefunction-based methodologies which were exclusively employed previously. Interestingly, DFT has been first applied to solids, with a rather late recognition by chemists and molecular scientists. After this historical survey, several applications of DFT to the structure and properties of zeolites are reviewed as a tribute to Dr Annick Goursot.
Neutral, Radical [CpNi(dithiolene)] Complexes with Flexible, Nonplanar Seven-Membered Rings: [CpNi{S2C2S2(CH2)2X}] (X = CH2, CF2, C=CH2, S, C=O)
M. Nomura, , P. Adkine and M. Fourmigué European Journal of Inorganic Chemistry, 2006 (24) (2006), p5012-5021 Keywords: nickel ; S ligands ; radicals ; metallacycles ; magnetic properties
DOI:10.1002/ejic.200600649 | unige:3634 | Abstract | Article HTML | Article PDF
Neutral, radical [CpNi(dithiolene)] complexes fused with seven-membered rings, formulated as [CpNi{S2C2S2(CH2)2X}] (X = CH2, CF2, C=CH2, S), have been synthesized in 30-60 % yields from the reactions of nickelocene with the corresponding neutral, square-planar, (dithiolene)nickel complexes [Ni{S2C2S2(CH2)2X}2]. [CpNi{S2C2S2(CH2)2X}] (X = C=O) was prepared from nickelocene and [1,3]dithiolo[4,5-b][1,4]dithiepine-2,6-dione under thermal or photochemical conditions. All complexes exhibit reversible oxidation and reduction waves to the cation and anion form, respectively. The terminal groups (X) in the seven-membered ring shift their redox potentials to anodic potentials in the following order: CF2 > C=O > S > C=CH2 > CH2. The singlet EPR responses of [CpNi{S2C2S2(CH2)2(X)}] appear at g ≈ 2.0514-2.0529 in dichloromethane solution at room temperature. An NIR absorption is observed at λmax ≈ 798-848 nm (ε ≈ 1700-2400 sup>-1 cm-1) in dichloromethane solution. The X-ray structures of the five complexes show two-legged piano-stool geometries around the central nickel atom (formally NiIII) and strong distortions from planarity of the seven-membered C2S2(CH2)2X rings. In the solid state, those radical (S = 1/2) species adopt either one-dimensional alternating chain-like motifs (X = CH2, C=CH2, S) or dimeric entities characterized by a singlet-triplet magnetic behavior (X = CF2, C=O).
Circular dichroism (CD) spectra and density functional theory (DFT) calculations are reported for a series of conformationally bistable chiroporphyrins with 8-methylene bridles MBCP-8, which can display either an αααα or an αβαβ orientation of their meso substituents. From DFT geometry optimizations, the most stable form of ZnBCP-8 is found to be the αααα conformer. By passing to NiBCP-8, there is a strong stabilization of the αβαβ conformation with respect to the αααα conformation, consistent with the X-ray structures of αααα-ZnBCP-8 and αβαβ-NiBCP-8. A correlation between the sign of the CD signal in the Soret region and the conformation of the BCP-8 compounds is reported: the αααα conformers H2BCP-8 and ZnBCP-8 show a positive CD signal, whereas the αβαβ conformers NiBCP-8 and CuBCP-8 exhibit a negative signal. The possible contributions to the rotational strengths of αβαβ-NiBCP-8 and αααα-ZnBCP-8, calculated on the basis of their crystal structures, have been analyzed. The CD signals are found to result from a combination of both the inherent chirality of the porphyrin and of extrinsic contributions due to the chiral bridles. These results may have a broad significance for understanding the chiroptical properties of chiral porphyrins and hemoproteins and for monitoring stimuli-responsive, conformationally bistable chiroporphyrin compounds.
Photoswitching of the dielectric constant has been observed for the first time in the spin-crossover complex [Fe(L)(CN)2]·H2O (L=2,13-dimethyl-6,9-dioxa-3,12,18-triazabicyclo[12.3.1]octadeca-1(18),2,12,14,16-pentaene, see picture). The electrical detection of a photoinduced change in spin state could allow the use of such complexes in optical information-storage devices.
Frequency shifts of the Ag I 4d105s 2S1∕2(F=0,MF=0) to 4d95s22D5∕2(F′=2,MF′=0) electric-quadrupole transition at 330.6 nm due to external fields are calculated using multiconfigurational self-consistent field methods. As this forbidden transition is free from first order Doppler and Zeeman effects, it is under investigation for the realization of an atomic optical clock. The calculated perturbations are the light shift, the blackbody frequency shift, and the quadratic Zeeman shift. Results show that a total uncertainty of 10−18 could be reach without confining the atoms in a Lamb-Dicke regime in an optical lattice.
The bifunctional of the nonadditive kinetic energy in the reference system of noninteracting electrons ( Tnads [ρA, ρB] = Ts[ρA + ρB] − Ts[ρA] − Ts[ρB]) is the key quantity in orbital-free embedding calculations because they hinge on approximations to Tnads [ρA,ρB]. Since Tnads [ρA,ρB] is not linear in ρA, the associated potential (functional derivative) Tnads [ρ,ρB]/δρ|ρ=ρA(r→) changes if ρA varies. In this work, for two approximations to Tnads [ρA,ρB], which are nonlinear in ρA (gradient-free and gradient-dependent), their linearized versions are constructed, and the resulting changes (linearization errors) in various properties of embedded systems (orbital energies, dipole moments, interaction energies, and electron densities) are analyzed. The considered model embedded systems represent typical nonbonding interactions: van der Waals contacts, hydrogen bonds, complexes involving charged species, and intermolecular complexes of the charge-transfer character. For van der Waals and hydrogen bonded complexes, the linearization of Tnads [ρA,ρB] affects negligibly the calculated properties. Even for complexes, for which large complexation induced changes of the electron density can be expected, such as the water molecule in the field of a cation, the linearization errors are about 2 orders of magnitude smaller than the interaction induced shifts of the corresponding properties. Linearization of Tnads [ρA,ρB] is shown to be inadequate for the complexes of a strong charge-transfer character. Compared to gradient-free approximation to Tnads [ρA,ρB], introduction of gradients increases the linearization error.
About3 µm thick tungsten trioxide film electrodes consisting of partlysintered, 40-80 nm in diameter, particles deposited on conducting glasssubstrates exhibit high photon-to-current conversion efficiencies for the photooxidation ofwater, exceeding 70% at 400 nm. This is facilitated bya ca. 40% film porosity resulting in high contact areawith the electrolyte. It is shown that the activity ofthe WO3 electrodes towards photooxidation of water is enhanced byaddition of even small amounts of halide (Cl-, Br-) ionsto the acidic electrolyte. Photoelectrolysis experiments performed either in acidicelectrolytes containing chloride or bromide anions or in a 0.5M NaCl solution, under simulated 1.5 AM solar illumination, demonstratedlong term stability of the photocurrents. Oxygen remains the mainproduct of the photoanodic reaction even in a 0.5 MNaCl solution, a composition close to the sea water, withchlorine accounting for ca. 20% of current efficiency.
Ultrafast infrared transient absorption spectroscopy is used to study the photoinduced bimolecular electron transfer reaction between perylene in the first singlet excited state and 1,4-dicyanobenzene in acetonitrile and dichloromethane. Following vibrational marker modes on both donor and acceptor sides in real time provides direct insight into the structural dynamics during the reaction. A band narrowing on a time scale of a few tens of picoseconds observed on the antisymmetric CN stretching vibration of the dicyanobenzene radical anion indicates that a substantial part of the excess energy is channeled into vibrational modes of the product, despite the fact that the reaction is weakly exergonic. An additional narrowing of the same band on a time scale of several hundreds of picoseconds observed in acetonitrile only is interpreted as a signature of the dissociation of the geminate ion pairs into free ions.
Ultrafast Dynamics of Fluorescent DNA Intercalators
A. Fürstenberg, M.D. Julliard, T.G. Deligeorgiev, N.I. Gadjev, A.A. Vassilev and
in "Femtochemistry VII: Fundamental Ultrafast Processes in Chemistry, Physics, and Biology"
A. W. Castleman Jr., M. L. Kimble Eds., Elsevier,
(2006), p391-395 unige:4037
Multiconfigurational quantum chemical methods (CASSCF/CASPT2) have been used to study the chemical bond in the actinide diatoms Ac2, Th2, Pa2, and U2. Scalar relativistic effects and spin−orbit coupling have been included in the calculations. In the Ac2 and Th2 diatoms the atomic 6d, 7s, and 7p orbitals are the significant contributors to the bond, while for the two heavier diatoms, the 5f orbitals become increasingly important. Ac2 is characterized by a double bond with a 3∑g-(0g+) ground state, a bond distance of 3.64. Å, and a bond energy of 1.19 eV. Th2 has quadruple bond character with a 3Dg(1g) ground state. The bond distance is 2.76 Å and the bond energy (D0) 3.28 eV. Pa2 is characterized by a quintuple bond with a 3∑g-(0g+) ground state. The bond distance is 2.37 Å and the bond energy 4.00 eV. The uranium diatom has also a quintuple bond with a 7Og (8g) ground state, a bond distance of 2.43 Å, and a bond energy of 1.15 eV. It is concluded that the strongest bound actinide diatom is Pa2, characterized by a well-developed quintuple bond.
On the nature of the metal-metal multiple bond
L. Gagliardi and B.O. Roos
in "Lecture Series on Computer and Computational Sciences"
Brill Academic Publisher,
6 (2006), p6-22
The separation of different ring numbered polyaromatic hydrocarbons (PAHs) was accomplished by using cetyltrimethylammonium bromide (CTAB) in capillary electrokinetic chromatography. In order to increase the solubilities and selectivities of PAHs, acetonitrile (ACN) was used as an organic modifier. Under the optimised conditions, 11 aromatic compounds were separated within 14.5 min in a running electrolyte containing 10 mM phosphate, 30 mM CTAB, and 40% ACN at pH 6.0. The effects of CTAB and ACN concentrations, voltage and pH on the resolution were investigated. Reproducibilities of migration times range between 0.55 and 1.27 R.S.D.% and peak areas between 1.02 and 7.23 R.S.D.%. Limit of detections (LODs) range between 0.09 and 2.24 μg ml−1. This new and fast separation method of PAHs was applied to cooked oil sample.
One-electron reduction of a diphosphafulvenium dication gives the first stable diphosphafulvenium monoradical cation (see scheme). An X-ray crystal structure analysis, EPR measurements, and DFT calculations clearly show that reduction takes place at the exocyclic double bond and that the excess of electron density is stabilized by the two electron-withdrawing phosphonium groups (see SOMO; P orange, C dark gray, H light gray).
Electronic Structure, Spectroscopic Properties, and Reactivity of Molybdenum and Tungsten Nitrido and Imido Complexes with Diphosphine Coligands: Influence of the trans Ligand
K. Mersmann, , N. Lehnert and F. Tuczek Inorganic Chemistry, 45 (2006), p5044-5056
DOI:10.1021/ic060141n | unige:3294 | Abstract | Article HTML | Article PDF
A series of molybdenum and tungsten nitrido, [M(N)(X)(diphos)2], and imido complexes, [M(NH)(X)(diphos)2)]Y, (M = Mo, W) with diphosphine coligands (diphos = dppe/depe), various trans ligands (X = N3-, Cl-, NCCH3) and different counterions (Y- = Cl-, BPh4-) is investigated. These compounds are studied by infrared and Raman spectroscopies; they are also studied with isotope-substitution and optical-absorption, as well as emission, spectroscopies. In the nitrido complexes with trans-azido and -chloro coligands, the metal−N stretch is found at about 980 cm-1; upon protonation, it is lowered to about 920 cm-1. The 1A1 → 1E (n → π*) electronic transition is observed for [Mo(N)(N3)(depe)2] at 398 nm and shows a progression in the metal−N stretch of 810 cm-1. The corresponding 3E → 1A (π* → n) emission band is observed at 542 nm, exhibiting a progression in the metal−N stretch of 980 cm-1. In the imido system [Mo(NH)(N3)(depe)2]BPh4, the n → π* transition is shifted to lower energy (518 nm) and markedly decreases in intensity. In the trans-nitrile complex [Mo(N)(NCCH3)(dppe)2]BPh4, the metal−N(nitrido) stretching frequency increases to 1016 cm-1. The n → π* transition now is found at 450 nm, shifting to 525 nm upon protonation. Most importantly, the reduction of this nitrido trans-nitrile complex is drastically facilitated compared to its counterparts with anionic trans-ligands (Epred = −1.5 V vs Fc+/Fc). On the other hand, the basicity of the nitrido group is decreased (pKa{[Mo(NH)(NCCH3)(dppe)2](BPh4)2} = 5). The implications of these findings with respect to the Chatt cycle are discussed.
State-of-the-art generalized gradient approximation (GGA) (PBE, OPBE, RPBE, OLYP, and HCTH), meta-GGA (VSXC and TPSS), and hybrid (B3LYP, B3LYP*, O3LYP, and PBE0) functionals are compared for the determination of the structure and the energetics of the D3 [Co(bpy)3]2+ complex in the 4A2 and 4E trigonal components of the high-spin 4T1g( t52g e2g ) state and in the low-spin 2E state of octahedral 2Eg( t62g e1g) parentage. Their comparison extends also to the investigation of the Jahn−Teller instability of the 2E state through the characterization of the extrema of C2 symmetry of this spin state's potential energy surface. The results obtained for [Co(bpy)3]2+ in either spin manifold are very consistent among the functionals used and are in good agreement with available experimental data. The functionals, however, perform very differently with respect to the spin-state energetics because the calculated values of the high-spin/low-spin energy difference ΔEelHL vary between −3212 and 3919 cm-1. Semilocal functionals tend to give too large ΔEelHL values and thus fail to correctly predict the high-spin state as the ground state of the isolated complex, while hybrid functionals tend to overestimate the stability of the high-spin state with respect to the low-spin state. Reliable results are, however, obtained with the OLYP, HCTH, B3LYP*, and O3LYP functionals which perform best for the description of the isolated complex. The optical properties of [Co(bpy)3]2+ in the two spin states are also analyzed on the basis of electronic excitation calculations performed within time-dependent density functional response theory. The calculated absorption and circular dichroism spectra agree well with experimental results.
Preparation and characterization of 3-(4,5-ethylenedithio-1,3-dithiol-2-ylidene)naphthopyranone: a luminescent redox-active donor–acceptor compound
S. Dolder, S.-X. Liu, X. Guégano, M. Atanasov, C.A. Daul, C. Leiggener, , A. Neels and S. Decurtins Tetrahedron, 62 (48) (2006), p11106-11111 Keywords: Naphthopyranone; TTF; Donor–acceptor compound; Cyclic voltammetry; TDDFT calculations; Luminescence
DOI:10.1016/j.tet.2006.09.032 | unige:3295 | Abstract | Article HTML | Article PDF
A new 1,3-dithiol-2-ylidene substituted naphthopyranone 2 has been synthesized and characterized. UV–vis spectroscopic and cyclic voltammetry results, interpreted on the basis of density functional theory, show that 2 displays an intramolecular charge-transfer transition and acts like a donor–acceptor (D–A) system. Furthermore, a weak fluorescence originating from the excited charge-transfer state is observed.
Luminophors of the perylene series containing the N,N-dimethylaniline residue in their molecules have been synthesised for the first time; spectral and luminescent properties of these compounds have been studied
Various preparations of the neutral radical [CpNi(dddt)] complex (dddt = 5,6-dihydro-1,4-dithiin-2,3-dithiolate) were investigated with CpNi sources, [Cp2Ni], [Cp2Ni](BF4), [CpNi(CO)]2, and [CpNi(cod)](BF4), and dithiolene transfer sources, O=C(dddt), the naked dithiolate (dddt2-), the monoanion of square-planar Ni dithiolene complex (NBu4)[Ni(dddt)2], and the neutral complex [Ni(dddt)2]. The reaction of [CpNi(cod)](BF4) with (NBu4)[Ni(dddt)2] gave the highest yield for the preparation of [CpNi(dddt)] (86%). [CpNi(ddds)] (ddds = 5,6-dihydro-1,4-dithiin-2,3-diselenolate), [CpNi(dsdt)] (dsdt = 5,6-dihydro-1,4-diselenin-2,3-dithiolate), [CpNi(bdt)] (bdt = 1,2-benzenedithiolate), and [CpNi(bds)] (bds = 1,2-benzenediselenolate) were synthesized by the reactions of [Cp2Ni] with the corresponding neutral Ni dithiolene complexes [Ni(ddds)2]2, [Ni(dsdt)2], [Ni(bdt)2], and [Ni(bds)2], respectively. The five, formally NiIII, radical complexes oxidize and reduce reversibly. They exhibit, in the neutral state, a strong absorption in the NIR region, from 1000 nm in the dddt/ddds/dsdt series to 720 nm in the bdt/bds series with ε values between 2500 and 5000 M-1 cm-1. The molecular and solid state structures of the five complexes were determined by X-ray structure analyses. [CpNi(dddt)] and [CpNi(ddds)] are isostructural, while [CpNi(dsdt)] exhibits a closely related structure. Similarly, [CpNi(bdt)] and [CpNi(bds)] are also isostructural. Correlations between structural data and magnetic measurements show the presence of alternated spin chains in [CpNi(dddt)], [CpNi(ddds)], and [CpNi(dsdt)], while a remarkably strong antiferromagnetic interaction in [CpNi(bdt)] and [CpNi(bds)] is attributed to a Cp···Cp face-to-face σ overlap, an original feature in organometallic radical complexes.
The binding of N-heterocyclic carbenes to Ce(III) and U(III) compounds is characterized by quantum chemical methods. Density functional methods are in qualitative agreement with experiment that binding to U(III) is more favorable than to Ce(III); after correcting for basis-set superposition error, quantitative agreement with experiment is achieved with a multireference second-order perturbation theory approach accounting for relativistic effects. The small computed (and observed) preference derives from a combination of several small effects, including differences in electronic binding energies, rovibrational partition functions, and solvation free energies. Prospects for ligand modification to improve the differentiation between lanthanides and actinides are discussed on the basis of computational predictions.
The relative energetics of μ-η1:η1 (trans end-on) and μ-η2:η2 (side-on) peroxo isomers of Cu2O2 fragments supported by 0, 2, 4, and 6 ammonia ligands have been computed with various density functional, coupled-cluster, and multiconfigurational protocols. There is substantial disagreement between the different levels for most cases, although completely renormalized coupled-cluster methods appear to offer the most reliable predictions. The significant biradical character of the end-on peroxo isomer proves problematic for the density functionals, while the demands on active space size and the need to account for interactions between different states in second-order perturbation theory prove challenging for the multireference treatments. In the latter case, it proved impossible to achieve any convincing convergence.
On the crystallochemical origin of the disordered form of Ba7(EuII)F12Cl2 and the structural changes induced at high temperature
F. Kubel and Crystal Research and Technology, 41 (10) (2006), p1005-1012 Keywords: disordered solids ; structural changes ; luminescence
DOI:10.1002/crat.200610712 | unige:3641 | Abstract | Article PDF
The crystal structure of the disordered modification of Ba7F12Cl2 has been carefully re-examined on several new crystals prepared under different conditions of synthesis. All single crystal structure refinements reveal a residual electron density of ~3 e-/Å3 in the 0,0,0 position which is explained by the introduction of a small amount of sodium ions in the crystal. The title compound transforms from a disordered to an ordered modification at ~800 °C. New structural data show a change in space group from P63/m to P6. During this process, a slight chemical change and the formation of nano-channels in the crystals is observed by electron microscopy. These changes were further studied by electron microprobe analysis, by spectroscopic methods and thermal analysis.
Nice to see U2! The [PhUUPh] molecule (see picture; U pink, C gray, H white) has been studied by multiconfigurational quantum chemical methods. It was found that a quintuple bond is formed between the two uranium atoms with a U—U bond length of 2.29 Å. The phenyl ligand was used to mimic a bulky terphenyl ligand, which could be a promising candidate for the stabilization of multiply bonded uranium compounds.
Paramagnetic complexes M(CO)5P(C6H5)2, with M = Cr, Mo, W, have been trapped in irradiated crystals of M(CO)5P(C6H5)3 (M = Cr, Mo, W) and M(CO)5PH(C6H5)2 (M = Cr, W) and studied by EPR. The radiolytic scission of a P−C or a P−H bond, responsible for the formation of M(CO)5P(C6H5)2, is consistent with both the number of EPR sites and the crystal structures. The g and 31P hyperfine tensors measured for M(CO)5P(C6H5)2 present some of the characteristics expected for the diphenylphosphinyl radical. However, compared to Ph2P•, the 31P isotropic coupling is larger, the dipolar coupling is smaller, and for Mo and W compounds, the g-anisotropy is more pronounced. These properties are well predicted by DFT calculations. In the optimized structures of M(CO)5P(C6H5)2 (M = Cr, Mo, W), the unpaired electron is mainly confined in a phosphorus p-orbital, which conjugates with the metal dxz orbital. The trapped species can be described as a transition metal-coordinated phosphinyl radical.
Quantum chemistry can today be employed to invent new molecules and explore unknown molecular bonding. An overview of novel species containing metals bound to polynitrogen clusters is presented. The prediction of metal polyhydrides is discussed. Finally, some species containing gold that behaves as a halogen are described, together with recent advances in actinide chemistry and exploration of the nature of the actinide–actinide chemical bonding.
Vibrational spectra of BH4- and its isotopic analogues in a crystalline environment of alkali metals cations (K+, Rb+, Cs+) have been investigated beyond the harmonic approximation using a variational approach supported by computations of B3LYP type anharmonic force fields. From the comparison of the observed and simulated IR spectra, the influence of the anharmonic couplings on the band position and on the relative intensity of the allowed vibrational transitions is discussed. Here, the effect of the crystalline environment induces a blue shift of about 50 and 100 cm-1 respectively for the bending and stretching modes of BH4-. Furthermore, anharmonic effects, which are exclusively well reproduced by a variational approach, are needed to yield reliable positions and relative amplitudes of IR allowed combination and overtone transitions. This leads to theoretical results fitting their experimental counterpart between 6 and 30 cm-1 in the investigated series.
A series of 6-styryl-2,4-diphenylpyrylium salts exhibiting dual fluorescence has been investigated by fluorescence up-conversion in conjunction with quantum chemical calculations. The short-wavelength emission is due to an excited state localized on the pyrylium fragment and the long-wavelength emission arises from a charge-transfer state delocalized over the whole molecule. The two fluorescing states do not exhibit a precursor−successor relationship. The rise time of the short-wavelength fluorescence is smaller than 200 fs, and that of the long-wavelength emission depends on the electron-donating property of the styryl group substituent. The rise is almost prompt with the weaker donors but is slower, wavelength and viscosity dependent with the strongest electron-donating group. A model involving a S2/S1 conical intersection is proposed to account for these observations.
Femtosecond and nanosecond laser flash photolysis was used to determine the photophysical and photochemical processes in aqueous solutions of Fe(III) ion and 5-sulfosalicylic acid (SSA) containing the FeSSA complex and the free ligand. Excitation of the FeSSA complex in the charge transfer band (λmax = 505 nm) is followed by an ultrafast relaxation to the ground electronic state with two characteristic times of 0.26 and 1.8 ps. The shorter time constant is ascribed to internal conversion to the vibrationally hot electronic ground state of FeSSA and the 1.8 ps time constant is assigned to the vibrational cooling of the ground state. The UV irradiation of the solution (308 nm) leads to the excitation of both the free ligand and the FeSSA complex. The latter relaxes rapidly and the free ligand undergoes intersystem crossing to the triplet state. This system undergoes an irreversible photochemical reaction originating from an electron transfer (k = (9 ± 2) × 108 M−1 s−1) from the free ligand in the triplet state to the FeSSA complex. This electron transfer is accompanied by an energy transfer between these species (k = (1.3 ± 0.2) × 109 M−1 s−1).
The ligand-field induced splitting energies of f-levels in lanthanide-containing elpasolites are derived using the first-principles universal orbital-free embedding formalism [Wesolowski and Warshel, J. Phys. Chem.1993, 97, 8050]. In our previous work concerning chloroelpasolite lattice (Cs2NaLnCl6), embedded orbitals and their energies were obtained using an additional assumption concerning the localization of embedded orbitals on preselected atoms leading to rather good ligand-field parameters. In this work, the validity of the localization assumption is examined by lifting it. In variational calculations, each component of the total electron density (this of the cation and that of the ligands) spreads over the whole system. It is found that the corresponding electron densities remain localized around the cation and the ligands, respectively. The calculated splitting energies of f-orbitals in chloroelpasolites are not affected noticeably in the whole lanthanide series. The same computational procedure is used also for other elpasolite lattices (Cs2NaLnX6, where X=F, Br, and I)—materials which have not been fabricated or for which the ligand-field splitting parameters are not available.
Photoproduction of Proton Gradients with pi-Stacked Fluorophore Scaffolds in Lipid Bilayers.
S. Bhosale, A.L. Sisson, P. Talukdar, A. Fürstenberg, N. Banerji, , G. Bollot, J. Mareda, C. Röger, F. Würthner, N. Sakai and S. Matile Science, 313 (5783) (2006), p84-86
DOI:10.1126/science.1126524 | unige:3301 | Abstract | Article HTML | Article PDF
Rigid p-octiphenyl rods were used to create helical tetramericπ-stacks of blue, red-fluorescent naphthalene diimides that canspan lipid bilayer membranes. In lipid vesicles containing quinoneas electron acceptors and surrounded by ethylenediaminetetraaceticacid as hole acceptors, transmembrane proton gradients arosethrough quinone reduction upon excitation with visible light.Quantitative ultrafast and relatively long-lived charge separationwas confirmed as the origin of photosynthetic activity by femtosecondfluorescence and transient absorption spectroscopy. Supramolecularself-organization was essential in that photoactivity was lostupon rod shortening (from p-octiphenyl to biphenyl) and chromophoreexpansion (from naphthalene diimide to perylene diimide). Ligandintercalation transformed the photoactive scaffolds into ionchannels.
One-electron Equations for Embedded Electron Density: Challenge for Theory and Practical Payoffs in Multi-Level Modeling of Complex Polyatomic Systems
in " Computational Chemistry: Reviews of Current Trends"
World Scientific,
10 (2006), p1-82 Keywords: multi-level, computer simulations, density functional theory, embedding, condensed matter
unige:4036
The idea of describing a many-electron system using only its electron density, i.e. without constructing its wavefunction, was initiated in the works of Thomas and Fermi. Hohenberg-Kohn theorems of modern density functional theory transformed this idea into an exact theory. The Kohn-Sham formalism, widely used in computer simulations of polyatomic systems today, is based on these theorems but is not orbital-free. It reintroduces orbitals to minimize errors in approximating the total energy. The present review concerns an alternative formalism based also on Hohenberg-Kohn theorems, in which orthogonal orbitals are used not for the whole system but only for subsystems [Cortona, Phys. Rev. B, 44 (1991) 8454]. These orbitals are derived from Kohn-Sham-like one-electron equations, called here Kohn-Sham Equations with Constrained Electron Density (KSCED), in which all terms representing the interactions between the subsystems are expressed as universal functionals of electron density. This formulation provides the formal basis for the orbital-free embedding in first-principles based multi-level simulations of complex systems, in which the orbital-level is retained for a selected subsystem, whereas its environment is described at the orbital-free level [Wesolowski and Warshel, J. Phys. Chem., 97 (1993) 8050]. The formal aspects, development and testing of relevant approximate density functionals, and the possible use of the orbital-free embedding in multi-level modelling are covered in detail in this review. Examples of applications, especially those concerning the electronic structure of embedded systems in the condensed phase are provided.
Multiconfigurational quantum chemical methods show that a quintuple bond is present between the two CrI units in the model complex [PhCrCrPh]. The Cr—Cr (1.75 Å) and Cr—Ph (2.02 Å) bonds are shorter than those in the recently reported compound [Ar'CrCrAr'] (Ar'=2,6-(2,6-iPr2C6H3)2C6H3; 1.83 and 2.15 Å, respectively). This difference is attributed to the additional Cr—Ar' interactions.
Nanosecond laser flash photolysis, absorption and fluorescent spectroscopy were used to study the influence of pH on the photophysical and photochemical processes of 5-sulfosalicylic acid (SSA) in aqueous solutions. Information on the excited singlet state intramolecular proton transfer (ESIPT) of the SSA ions could be deduced from the dependence of the quantum yield and the spectral maximum of SSA fluorescence on the pH of the medium. The main photochemical active form of SSA at pH < 10 is the dianion (HSSA2−). Excitation of this species gives rise to the HSSA2− triplet state, to the SSA•2− radical anion and to the hydrated electron. In a neutral medium, the main decay channels of these intermediates are T–T annihilation, recombination and capture by the HSSA2− dianion, respectively. A decrease of pH leads to an increase of the second-order rate constants of disappearance of both HSSA2− triplet state and SSA•2− radical anion due to their protonation.
Experimental (IR and Raman) and theoretical (Kohn-Sham calculations) methods are used in a combined analysis aimed at refining the available structural data concerning the molecular guests in channels formed by stacked dibenzo-18-crown-6 (DB18C6) crown ether. The calculations are performed for a simplified model comprising isolated DB18C6 unit and its complexes with either H2O or H3O+ guests, which are the simplest model ingredients of a one-dimensional diluted acid chain, to get structural and energetic data concerning the formation of the complex and to assign the characteristic spectroscopic bands. The oxygen centers in the previously reported crystallographic structure are assigned to either H2O or protonated species.
The ultrafast ground state recovery (GSR) dynamics of the radical cation of perylene, Pe•+, generated upon bimolecular photoinduced electron transfer in acetonitrile, has been investigated using pump−pump−probe spectroscopy. With 1,4-dicyanobenzene as electron acceptor, the free ion yield is substantial and the GSR dynamics of Pe•+ was found to depend on the time delay between the first and second pump pulses, Δt12, i.e., on the “age” of the ion. At short Δt12, the GSR dynamics is biphasic, and at Δt12 larger than about500 ps, it becomes exponential with a time constant around 3 ps. With trans-1,2-dicyanoethylene as acceptor, the free ion yield is essentially zero and the GSR dynamics of Pe•+ remains biphasic independently of Δt12. The change of dynamics observed with 1,4-dicyanobenzene is ascribed to the transition from paired to free solvated ion, because in the pair, the excited ion has an additional decay channel to the ground state, i.e., charge recombination followed by charge separation. The rate constants deduced from the analysis of these GSR dynamics are all fully consistent with this hypothesis.
The excited-state dynamics of the DNA bisintercalator YOYO-1 and of two derivatives has been investigated using ultrafast fluorescence up-conversion and time-correlated single photon counting. The free dyes in water exist in two forms: nonaggregated dyes and intramolecular H-type aggregates, the latter form being only very weakly fluorescent because of excitonic interaction. The excited-state dynamics of the nonaggregated dyes is dominated by a nonradiative decay with a time constant of the order of 5 ps associated with large amplitude motion around the monomethine bridge of the cyanine chromophores. The strong fluorescence enhancement observed upon binding of the dyes to DNA is due to both the inhibition of this nonradiative deactivation of the nonaggregated dyes and the dissociation of the aggregates and thus to the disruption of the excitonic interaction. However, the interaction between the two chromophoric moieties in DNA is sufficient to enable ultrafast hopping of the excitation energy as revealed by the decay of the fluorescence anisotropy. Finally, these dyes act as solvation probes since a dynamic fluorescence Stokes shift was observed both in bulk water and in DNA. Very similar time scales were found in bulk water and in DNA.
Photoexcitation and Relaxation Dynamics of Catecholato–Iron(III) Spin-Crossover Complexes
C. Enachescu, , J.-J. Girerd and M.-L. Boillot ChemPhysChem, 7 (2006), p1127-1135 Keywords: charge transfer, iron, laser spectroscopy, photophysics, spin crossover
DOI:10.1002/cphc.200500671 | unige:3649 | Abstract | Article HTML | Article PDF
The photophysical properties of the ferric catecholate spin-crossover compounds [(TPA)Fe(R-Cat)]X (TPA=tris(2-pyridylmethyl)amine; X=PF6-, BPh4-; R-Cat=catecholate dianion substituted by R=NO2, Cl, or H) are investigated in the solid state. The catecholate-to-iron(III) charge-transfer bands are sensitive both to the spin state of the metal ion and the charge-transfer interactions associated with the different catecholate substituents. Vibronic progressions are identified in the near-infrared (NIR) absorption of the low-spin species. Evidence for a low-temperature photoexcitation process is provided. The relaxation dynamics between 10 and 100 K indicate a pure tunneling process below ≈40 K, and a thermally activated region at higher temperatures. The relaxation rate constants in the tunneling regime at low temperature, kHL(T→0), vary in the range from 0.58 to 8.84 s-1. These values are in qualitative agreement with the inverse energy-gap law and with structural parameters. A comparison with ferrous spin-crossover complexes shows that the high-spin to low-spin relaxation is generally faster for ferric complexes, owing to the smaller bond length changes for the latter. However, in the present case the corresponding rate constants are smaller than expected based on the single configurational coordinate model. This is attributed to the combined influence of the electronic configuration and the molecular geometry.
The high-spin → low-spin relaxation in spin-crossover compounds can be described as non-adiabatic multi-phonon process in the strong coupling limit, in which the low-temperature tunnelling rate increases exponentially with the zero-point energy difference between the two states. Based on the hypothesis that the experimental bond length difference between the high-spin and the low-spin state of ~0.2 Å is also valid for low-spin iron(II) complexes, extrapolation of the single configurational coordinate model allows an estimate of the zero-point energy difference for low-spin complexes from kinetic data. DFT calculations on low-spin [Fe(bpy)3]2+ support the structural assumption. However, for low-spin [Fe(terpy)2]2+ the relaxation rate constant shows an anomalous behaviour in so far as it is more in line with spin-crossover systems. This is attributed to very anisotropic bond length changes associated with the spin state change, and the subsequent breakdown of the single mode model.
A redox-active tri star molecule: merging of TTF and HAT chemistry
C. Jia, S.-X. Liu, C. Tanner, C. Leiggener, L. Sanguinet, E. Levillain, S. Leutwyler, and S. Decurtins ChemComm, (17) (2006), p1878-1880
DOI:10.1039/b601173j | unige:3307 | Abstract | Article HTML | Article PDF
A planar π-conjugated heteroaromatic molecule 1 has been synthesized and fully characterized; it combines two characteristics, a charge-transfer transition originating from its inherent donor–acceptor nature in its neutral state and an intervalence charge-transfer transition in its 12+ mixed-valence state.
The dynamic Stokes shift of coumarin 153 has been measured in two room-temperature ionic liquids, 1-(3-cyanopropyl)-3-methylimidazolium bis(trifluoromethylsulfonyl)imide and 1-propyl-3-methylimidazolium tetrafluoroborate, using the fluorescence up-conversion technique with a 230 fs instrumental response function. A component of about 10−15% of the total solvation shift is found to take place on an ultrafast time scale < 10 ps. The amplitude of this component is substantially less than assumed previously by other authors. The origin of the difference in findings could be partly due to chromophore-internal conformational changes on the ultrafast time scale, superimposed to solvation-relaxation, or due to conformational changes of the chromophore ground state in polar and apolar environments. First three-pulse photon-echo peak-shift experiments on indocyanine green in room-temperature ionic liquids and in ethanol indicate a difference in the inertial component of the early solvent relaxation of <100 fs.
Computer simulation methods using orbital level of description only for a selected part of the larger systems are prone to the artificial charge leak to the parts which are described without orbitals. The absence of orbitals in one of the subsystems makes it impossible to impose explicitly the orthogonality condition. Using the subsystem formulation of density functional theory, it is shown that the absence of explicit condition of orthogonality between orbitals belonging to different subsystems, does not cause any breakdown of this type of description for the chosen intermolecular complexes (F−H2O and Li+H2O), for which a significant charge-leak problem could be a priori expected.
Matrix isolation infrared (IR) studies have been carried out on the vaporisation of the alkali-metal azides MN3 (M = Na, K, Rb and Cs). The results show that under high vacuum conditions, molecular KN3, RbN3 and CsN3 are present as stable high-temperature vapour species, together with variable amounts of nitrogen gas and the corresponding metal atoms. The characterisation of these molecular azides is supported by ab initio molecular orbital calculations and density functional theory (DFT) calculations, and for CsN3 in particular, by the detection of the isotopomers Cs(14N15N14N) and Cs(15N14N14N). The IR spectra are assigned to a "side-on" (C2v) structure by comparison with the spectral features predicted both by vibrational analysis and calculation. The most intense IR features for KN3, RbN3 and CsN3 isolated in nitrogen matrices lie at 2005, 2004.4 and 2002.2 cm-1, respectively, and correspond to the N3 asymmetric stretch. The N3 bending mode in CsN3 is identified at 629 cm-1. An additional feature routinely observed in these experiments occurred at approximately 2323 cm-1 and is assigned to molecular N2, perturbed by the close proximity of an alkali-metal atom. The position of this band appeared to show very little cation dependence, but its intensity correlated with the extent of sample thermal decomposition.
Investigations of bimolecular photoinduced electron transfer reactions in polar solvents using ultrafast spectroscopy
Several controversial questions in the field of bimolecular photoinduced electron transfer reactions in polar solvents are first briefly reviewed. Results obtained in our group using ultrafast spectroscopy and giving a new insight into these problems will then be described. They concern the driving force dependence of the charge separation distance, the formation of the reaction product in an electronic excited state, the absence of normal region for weakly exergonic charge recombination processes and the excitation wavelength dependence of the CR dynamics of donor–acceptor complexes.
Mechanism of Nitrate Reduction by Desulfovio desulfuricans Nitrate Reductase - A Theoretical Investigation
M. Leopoldini, N. Russo, M. Toscano, M. Dulak and Chemistry - A European Journal, 12 (9) (2006), p2532-2541 Keywords: density functional calculations; enzyme models; nitrate reductase; ONIOM; orbital-free embedding
DOI:10.1002/chem.200500790 | unige:3284 | Abstract | Article HTML | Article PDF
The oxidative half-reaction of oxygen atom transfer from nitrate to an MoIV complex has been investigated at various levels of theory. Two models have been used to simulate the enzyme active site. In the second, more advanced model, additional amino acid residues capable of significantly affecting the catalytic efficiency of the enzyme were included. B3LYP/6-31+G*, ONIOM, and orbital-free embedding approaches have been used to construct the potential energy profile and to qualitatively compare the results of a QM/MM study with those obtained by a full quantum mechanical strategy. The study has confirmed the utility of the orbital-free embedding method in the description of enzymatic processes.
Accurately describing the relative energetics of alternative bis(μ-oxo) and μ-η2:η2 peroxo isomers of Cu2O2 cores supported by 0, 2, 4, and 6 ammonia ligands is remarkably challenging for a wide variety of theoretical models, primarily owing to the difficulty of maintaining a balanced description of rapidly changing dynamical and nondynamical electron correlation effects and a varying degree of biradical character along the isomerization coordinate. The completely renormalized coupled-cluster level of theory including triple excitations and extremely efficient pure density functional levels of theory quantitatively agree with one another and also agree qualitatively with experimental results for Cu2O2 cores supported by analogous but larger ligands. Standard coupled-cluster methods, such as CCSD(T), are in most cases considerably less accurate and exhibit poor convergence in predicted relative energies. Hybrid density functionals significantly underestimate the stability of the bis(μ-oxo) form, with the magnitude of the error being directly proportional to the percentage Hartree−Fock exchange in the functional. Single-root CASPT2 multireference second-order perturbation theory, by contrast, significantly overestimates the stability of bis(μ-oxo) isomers. Implications of these results for modeling the mechanism of C−H bond activation by supported Cu2O2 cores, like that found in the active site of oxytyrosinase, are discussed.
Results from quantum chemical calculations that predict the existence of a series of diuranium molecules are reported. Two diuranium chlorides, U2Cl6 and U2Cl82-, and three different carboxylates, U2(OCHO)4, U2(OCHO)6, and U2(OCHO)4Cl2 have been studied. All species have been found to be stable with a multiply bonded U2 unit.
Cyclic voltammetry and EPR spectroscopy show that cationic phospholium groups are good electron acceptors whose reduction leads to a neutral radical where the unpaired electron is mainly delocalized on the carbon atoms of the five-membered ring. DFT calculations together with the crystal structure of phospholiums indicate that the electron addition causes a drastic diminution of the exocyclic CPC angle. The SOMO of reduced phospholium is compared to the SOMO of the phosphole radical anion.
Optical and vibrational properties of (MnF6)4- complexes in cubic fluoroperovskites: insight through embedding calculations using Kohn-Sham equations with constrained electron density
J.M. Garcia-Lastra, , M.T. Barriuso, J.A. Aramburu and M. Moreno Journal of Physics: Condensed Matter, 18 (5) (2006), p1519-1534
DOI:10.1088/0953-8984/18/5/004 | unige:3633 | Abstract | Article PDF
The local structure and optical and vibrational properties associated with Mn2+-doped cubic AMF3 (A = K, Rb; M = Mg, Zn, Cd) fluoroperovskites are studied by means of embedding calculations using Kohn–Sham equations with constrained electron density. It is shown that while an electronic parameter like 10Dq essentially depends on the Mn2+–F− distance, the local vibration frequencies ωi (i = a1g, eg modes) are dominated by the interaction between F− ligands and nearest M2+ ions lying along bonding directions. The high ωa values observed for KMgF3:Mn2+ and KZnF3:Mn2+, the huge variations of ωe and ωa frequencies when the host lattice is changed, as well as the increase of Huang–Rhys factors and the Stokes shift following the host lattice parameter, are shown to be related to this elastic coupling of the MnF64− complex to the rest of the host lattice. The present results support the conclusion that the Stokes shift is determined by the interaction of the excited 4T1g state with a1g and eg local modes while the coupling with the t2g shear mode is not relevant. The variations of local vibrational frequencies and the Stokes shift induced by a hydrostatic pressure on a given system are shown to be rather different to those produced by the chemical pressure associated with distinct host lattices.
Inter- and Intramolecular Interactions in Some Supramolecular Photochemical Systems
S. Delahaye, C. Loosli, S.-X. Liu, S. Decurtins, G. Labat, A. Neels, A. Loosli, T.R. Ward and Advanced Functional Materials, 16 (2) (2006), p286-295 Keywords: organometallic complexes ; photophysical effects ; phthalocynanines ; ruthenium complexes ; supramolecular materials
DOI:10.1002/adfm.200500329 | unige:3286 | Abstract | Article PDF
In supramolecular systems, the interaction between different units modulates their photophysical properties. a) For platinum(II) complexes with ligands that have extended π systems, π-stacking and direct metal-metal interactions result in the formation of excimers with characteristically red-shifted luminescence. Time-resolved emission spectra show clear evidence of dual luminescence. b) In phthalocyanines to which electron-donating tetrathiafulvalene (TTF) groups have been fused, the luminescence is strongly quenched by intramolecular electron transfer. The luminescence can be switched on by oxidation of the TTF groups. c) The luminescence of ruthenium tris-bipyridyl derivatives is strongly influenced by the environment. Linked to biotin, the luminescence quantum yield of such a complex is enhanced by 30 % upon binding to avidin. Furthermore, the binding to avidin induces a circular-dichroism signal from the π-π* transition of the initially racemic ruthenium tris-bipyridyl derivative.
The formalism based on the total energy bifunctional (E[ρI,ρII]) is used to derive interaction energies for several hydrogen-bonded complexes (water dimer, HCN–HF, H2CO–H2O, and MeOH–H2O). Benchmark ab initio data taken from the literature were used as a reference in the assessment of the performance of gradient-free [local density approximation (LDA)] and gradient-dependent [generalized gradient approximation (GGA)] approximations to the exchange-correlation and nonadditive kinetic-energy components of E[ρI,ρII]. On average, LDA performs better than GGA. The average absolute error of calculated LDA interaction energies amounts to 1.0 kJ/mol. For H2CO–H2O and H2O–H2O complexes, the potential-energy curves corresponding to the stretching of the intermolecular distance are also calculated. The positions of the minima are in a good agreement (less than 0.2 Å) with the reference ab initio data. Both variational and nonvariational calculations are performed to assess the energetic effects associated with complexation-induced deformations of molecular electron densities.
We report the synthesis, crystal structure and electrochemical behaviour of a complex in which the Ph group of the phosphaalkene PhC(H)=PMes* (Mes*: 2,4,6-tri-tert-butylphenyl) is coordinated to a chromium tricarbonyl group. The EPR spectra resulting from electrochemical and chemical reductions are described and the experimental g and hyperfine tensors (31P)T, as determined from the EPR data, are compared with those predicted by DFT calculations for the radical anion (Cr(CO)3, PhC(H)=PMes)·−. The structural changes caused by the addition of an electron to the neutral complex are described, together with an estimation of the contribution of Cr(CO)3 to the stabilization of the radical anion.
Tetrakis(trimethylsiloxy)titanium (TTMST, Ti(OSiMe3)4) possesses an isolated Ti center and is a highly active homogeneous catalyst in epoxidation of various olefins. The structure of TTMST resembles that of the active sites in some heterogeneous Ti−Si epoxidation catalysts, especially silylated titania−silica mixed oxides. Water cleaves the Ti−O−Si bond and deactivates the catalyst. An alkyl hydroperoxide, TBHP (tert-butyl hydroperoxide), does not cleave the Ti−O−Si bond, but interacts via weak hydrogen-bonding as supported by NMR, DOSY, IR, and computational studies. ATR−IR spectroscopy combined with computational investigations shows that more than one, that is, up to four, TBHP can undergo hydrogen-bonding with TTMST, leading to the activation of the O−O bond of TBHP. The greater the number of TBHP molecules that form hydrogen bonds to TTMST, the more electrophilic the O−O bond becomes, and the more active the complex is for epoxidation. An allylic alcohol, 2-cyclohexen-1-ol, does not interact strongly with TTMST, but the interaction is prominent when it interacts with the TTMST−TBHP complex. On the basis of the experimental and theoretical findings, a hydrogen-bond-assisted epoxidation mechanism of TTMST is suggested.
Combined in situ attenuated total reflection infrared and UV-vis spectroscopic study of alcohol oxidation over Pd/Al2O3
In situ attenuated total reflection (ATR) infrared and UV–vis spectroscopy are combined to yield simultaneous time-resolved information on dissolved reaction products, adsorbed species, and the catalyst during the oxidation of ethanol and 2-propanol on a 5% Pd/Al2O3 catalyst. The oxidation is initiated by change from hydrogen- to oxygen-saturated solvent flow. 2-Propanol oxidation is observed only in the transient period, whereas ethanol oxidation is also observed in the steady state. This may be ascribed to overoxidation of the catalyst in the former case. In a mixture of the two alcohols the same thing is observed. Competitive adsorption in the steady state may explain this behavior. For ethanol oxidation ethyl acetate is also observed during the transient period. The UV–vis spectra reveal a fast reversible change of the catalyst with switching between hydrogen and oxygen and a slow irreversible change during ethanol oxidation. The latter is ascribed to the change in Pd particle structure, which hardly affects, however, catalyst activity on the time scale of about 1 h.
Adsorption of the tripeptide l-glutathione (γ-glu-cys-gly) on gold surfaces was investigated by polarization modulation infrared reflection absorption spectroscopy (PM-IRRAS) and attenuated total reflection (ATR) infrared spectroscopy. PM-IRRAS was used to study ex situ the adsorbate layer prepared from aqueous solutions at different pH, whereas ATR-IR was applied to study in situ adsorption from ethanol in the presence and absence of acid and base. ATR-IR was furthermore combined with modulation spectroscopy in order to investigate the reversible changes within the adsorbate layer induced by acid and base stimuli, respectively. The molecule is firmly anchored on the gold surface via the thiol group of the cys part. However, the ATR-IR spectra in ethanol indicate a further interaction with the gold surface via the carboxylic acid group of the gly part of the molecule, which deprotonates upon adsorption. Hydrochloric acid readily protonates the two acid groups of the adsorbed molecule. During subsequent ethanol flow the acid groups deprotonate again, a process which proceeds in two distinct steps: a fast step associated with the deprotonation of the acid in the glu part of the molecule and a considerably slower step associated with deprotonation of the acid in the gly moiety. The latter process is assisted by the interaction of the corresponding acid group with the surface. The spectra furthermore indicate a rearrangement of the hydrogen bonding network within the adsorbate layer upon deprotonation. Depending on the protonation state during adsorption of l-glutathione, the response toward identical protonation−deprotonation stimuli is significantly different. This is explained by the ionic state-dependent shape of the molecule, as supported by density functional theory calculations. The different shapes of the individual molecules during layer formation thus influence the structure of the adsorbate layer.
The scope of the asymmetric hydrogenation of functionalized ketones over cinchona-modified platinum was extended to achiral α-hydroxyketones. Cinchonidine showed by far the best catalytic performance affording an enantiomeric excess between 57 and 82% depending on the substrate. O-methoxy-cinchonidine showed poor enantioselection. O-phenoxy-cinchonidine favoured the opposite enantiomer compared to cinchonidine. Solvents with empirical solvent parameters ET N – ranging from 0.10 to 0.65 were tested. Tert-butylmethylether proved to be the most suitable. The highest ratio of substrate/cinchonidine where no loss in e.e. was observed was at around 540, independent of the structure of the α-hydroxyketone. The oxygen in α-position to the ketone seems to play an important role in the enantioselection as well as a phenyl ring or a rigid cis-conformation. The dependence of the enantiomeric excess on the modifier structure and the inversion of the sense of enantiodifferentiation is interpreted in terms of repulsive interactions, which become more evident as the steric demand of the functional group (OH, O-Me, O-Ph) of the modifier increases. The findings indicate that a hydrogen bond in the modifier reactant complex involving the hydroxyl functionality of cinchonidine is not crucial in order to achieve high enantioselectivity.
Alumina-supported rhodium modified with cinchonidine has been investigated with regard to its applicability in the enantioselective hydrogenation of various aromatic ketones possessing an α-hydroxy or α-methoxy group. The study revealed that depending on the substrate, rhodium can outperform the catalytic behavior of platinum. With one of the substrates, 2-hydroxy-1-(4-methoxy-phenyl)-ethanone (4), an enantiomeric excess (ee) of 80% at 89% conversion was reached, which is the highest ee reported so far for chirally modified rhodium. However, completely different conditions are required to achieve optimal catalytic performance with rhodium, compared with platinum. Rhodium requires a much higher modifier concentration, and high hydrogen pressure is favorable. The higher modifier concentration required is traced to the much higher activity of rhodium for the hydrogenation of the quinoline ring, which is assumed to be the anchoring moiety of the cinchona modifiers on the platinum group metals. Changing the modifier from cinchonidine to O-phenoxy-cinchonidine resulted in a switch of the major enantiomer of the product, as exemplified for 2-hydroxyacetophenone (1), which showed a switch from 73% ee in favor of the (R)-product to 68% ee for the (S)-product when the modifier was changed from cinchonidine to O-phenoxy-cinchonidine.
The interaction of proline with self-assembled monolayers (SAMs) of l-glutathione (γ-glu-cys-gly) on gold was investigated by a combination of attenuated total reflection (ATR-IR) infrared and modulation excitation spectroscopy (MES). The latter technique makes use of phase-sensitive detection of periodically varying signals and allows discrimination between species with different kinetics such as dissolved proline and adsorbed molecules. By applying a convection−diffusion model coupled to adsorption and desorption, it was possible to extract relative adsorption and desorption rates from the experimental data for the two enantiomers of proline, fully accounting for mass transport within the flow-through cell. The results show that, in particular, the desorption kinetics is different for the two enantiomers. Therefore, the l-glutathione SAM can discriminate between enantiomers, d-proline being stronger bound. The IR spectra reveal that upon interaction with proline the adsorbed l-glutathione is protonated at the gly part of the molecule, which, in the absence of proline, is bound to the gold surface as carboxylate. The observed protonation of adsorbed l-glutathione upon interaction with proline goes along with a structural change of the former, which seems to play an important role for enantiodiscrimination.
Conformational rigidity: a necessary prerequisite of chiral modifiers used in heterogeneous enantioselective catalysis?
E. Orglmeister, , T. Mallat and A. Baiker Journal of Catalysis, 232 (1) (2005), p137-142 Keywords: Acid effect; Asymmetric heterogeneous catalysis; Pt/Al2O3; Ketopantolactone; Hydrogenation; Ab initio calculation; NOE; Modifier conformation
DOI:10.1016/j.jcat.2005.03.005 | unige:14782 | Article HTML | Article PDF
In the hydrogenation of ketopantolactone, the (R,R) and (R,S) diastereomers of a new chiral modifier, pantoyl-naphthylethylamine, afforded 74 and 40% ee, respectively, to (R)-pantolactone. On the basis of NOE studies and theoretical calculations, the different properties of the diastereomers and in particular the effect of acid on the modifier structure are deduced from differences in conformational rigidity and steric constraint. In case of the (R,R)-diastereomer, a loose, extended structure in apolar solvent changes to a compact conformation via an additional intramolecular hydrogen bond, resulting in a more defined “chiral pocket” available for the reactant on the Pt surface.
O-Phenylcinchonidine (PhOCD) is known to efficiently induce inversion of enantioselectivity with respect to cinchonidine (CD) in the enantioselective hydrogenation of various activated ketones on Pt/Al2O3. To understand the origin of the switch of enantioselective properties of the catalyst, the adsorption of PhOCD has been studied by in situ ATR-IR spectroscopy, in the presence of organic solvent and dissolved hydrogen, i.e., under conditions used for catalytic hydrogenation. The adsorption structures and energies of the anchoring group of CD and PhOCD were calculated on a Pt 38 cluster, using relativistically corrected density functional theory (DFT). Both approaches indicate that both modifiers are adsorbed via the quinoline ring and that the spatial arrangement of the quinuclidine skeleton is critical for the chiral recognition. New molecular level information on the conformation of CD relative to PhOCD adsorbed on a surface is extracted from the ATR spectra and supported by DFT calculations. The result is a clearer picture of the role played by the phenyl group in defining the chiral space created by the modifiers on Pt. Moreover, when CD was added to a pre-equilibrated adsorbed layer of PhOCD, a chiral adsorbed layer was formed with CD as the dominant modifier, indicating that CD adsorbs more strongly than PhOCD. Conversely, when PhOCD was added to preadsorbed CD, no significant substitution occurred. The process leading to nonlinear effects in heterogeneous asymmetric catalysis has been characterized by in situ spectroscopy, and new insight into a heterogeneous catalytic R−S switch system is provided.
The adsorption of N-acetyl-l-cysteine from ethanol solution on gold has been studied by in situ attenuated total reflection infrared (ATR-IR) spectroscopy, polarization modulation infrared reflection absorption spectroscopy, and a quartz crystal microbalance. After an initial fast adsorption, in situ ATR-IR revealed two considerably slower processes, besides further adsorption. The appearance of carboxylate bands and the partial disappearance of the carboxylic acid bands demonstrated that part of the molecules on the surface underwent deprotonation. In addition, the C=O stretching vibration of the carboxylic acid group shifted to lower and the amide II band to higher wavenumbers, indicating hydrogen-bonding interactions within the adsorbate layer. Based on the initial ATR-IR spectrum, which did not reveal deprotonation, the orientation of the molecule within the adsorbate layer was determined. For this, density functional theory was used to calculate the transition dipole moment vectors of the vibrational modes of N-acetyl-l-cysteine. The projections of the latter onto the z-axis of the fixed surface coordinate system were used to determine relative band intensities for different orientations of the molecule. The analysis revealed that the amide group is tilted with respect to and points away from the surface, whereas the carboxylic acid is in proximity to the surface, which is also supported by a shift of the C−O−H bending mode. This position of the acid group favors its deprotonation assisted by the gold surface and easily enables intermolecular interactions. Periodic acid stimuli revealed reversible protonation/deprotonation of part of the adsorbed molecules. However, only non-hydrogen-bonded carboxylic acid groups showed a response toward the acid stimuli.
Synthesis and Characterization of Tetrahedral Ru3O Clusters with Intrinsic Framework Chirality: A Chiral Probe of the Intact Cluster Catalysis Concept
L. Vieille-Petit, G. Süss-Fink, B. Therrien, T.R. Ward, H. Stœckli-Evans, G. Labat, L. Karmazin-Brelot, A. Neels, , R.G. Finke and C.M. Hagen Organometallics, 24 (25) (2005), p6104-6119
DOI:10.1021/om050643t | unige:14737 | Abstract | Article HTML | Article PDF
To bring evidence for or against the hypothesis of catalytic hydrogenation by intact trinuclear arene ruthenium clusters containing an oxo cap, cationic Ru3O clusters with three different arene ligands (intrinsically chiral tetrahedra) have been synthesized as racemic mixtures. By introduction of a chiral auxiliary substituent at one of the three different arene ligands, the separation of the two diastereomers was possible. The chiral Ru3O framework was evidenced by X-ray crystallography, by circular dichroism in the UV and IR regions, and by chiral shift reagents in the NMR spectra. The catalytic hydrogenation of the prochiral substrate methyl 2-acetamidoacrylate using a chiral Ru3O cluster showed no asymmetric induction, suggesting that the catalytically active species is not the intact Ru3O cluster.
Vibrational circular dichroism of N-acetyl-L-cysteine protected gold nanoparticles
C. Gautier and ChemComm, (43) (2005), p5393-5395
DOI:10.1039/b509346e | Abstract
Vibrational circular dichroism is used to determine the conformation of a thiol adsorbed on gold nanoparticles.
Applied density functional theory and the deMon codes 1964-2004
D.R. Salahub, A. Goursot, , A.M. Köster and A. Vela
in "Theory and Applications of Computational Chemistry : The First 40 Years. A Volume of Technical and Historical Perspectives"
C.E. Dykstra, G. Franking, K.S. Kim and G.E. Scuseria, eds., Elsevier, Amsterdam,
(2005), p1079 unige:4033
Reactivity of Copper(I) Complexes with Tripodal Ligands towards O2: Structures of a Precursor [L3CuI(NCCH3)](BF4), L3 = Tris(3-isopropyl-4,5-trimethylenepyrazolyl)methane and of its Oxidation Product [L3CuII(-OH)2CuIIL3](BF4)2 with Strong Antiferromagnetic Spin-Spin Coupling
W. Kaim, C. Titze, T. Schurr, M. Sieger, , J. Jordanov, D. Rojas, A.M. García and J. Manzur Zeitschrift für anorganische und allgemeine Chemie, 631 (13-14) (2005), p2568-2574
DOI:10.1002/zaac.200500053 | unige:3316 | Abstract | Article PDF
The molecular structure of the highly oxygen-sensitive complex [L3CuI(NCCH3)](BF4) (1) reveals approximately symmetrical coordination by the fac-tridentate (tripodal) ligand L3 = tris(3-isopropyl-4,5-trimethylenepyrazolyl)methane and a rather short CuI-N(acetonitrile) distance of 1.865(5) Å. In CH2Cl2 at -78 °C the colourless compound reacts with O2 to yield a labile purple intermediate (λmax 517 nm) - presumably a peroxodicopper(II) complex - which decomposes at -30 °C. No such intermediate was observed on reaction of the CuI complex of bis(2-pyridylmethyl)benzylamine with O2 at -80 °C. However, an EPR spectrum with g|| = 2.17 and g_|_ = 2.03 without 63,65Cu hyperfine splitting was observed at low temperatures. Exposure of the precursor 1 to air under ambient conditions yields dinuclear [L3Cu||(μ-OH)2CuIIL3](BF4)2 (2) which exhibits an EPR detectable dissociation into monomers in CH2Cl2 solution. The structure of the hexakis(dichloromethane) solvate of 2 with Cu-Cu and Cu-O distances of 3.055 and 1.94Å, respectively, is typical for dihydroxo-bridged dicopper compounds with square-pyramidal Cu|| configuration (τ = 0.03), adopting an anti arrangement. In agreement with the relatively wide Cu-O-Cu angles of 103.5° an analysis of the temperature dependence of the magnetic susceptibility revealed a rather strong (J = -633 cm-1) antiparallel spin-spin coupling. The effect is ascribed to the steric bulk of the ligand L3.
Vibrational and electronic circular dichroism of Δ-TRISPHAT [tris(tetrachlorobenzenediolato)phosphate(V)] anion
D. Bas, , J. Lacour, J. Vachon and Chirality, 17 (S1) (2005), p143-148
DOI:10.1002/chir.20131 | unige:3628 | Abstract | Article PDF
Herein is reported an experimental and theoretical study of the circular dichroism properties of TRISPHAT (1) anion. ECD analysis of the [tetramethylammonium][Δ-1] salt confirms the absolute configuration assignment obtained through X-ray crystallographic analysis of the parent cinchonidium salt. The structure, infrared, and vibrational circular dichroism (VCD) spectra derived from density functional theory (DFT) calculations are compared with experimental data.
The enantioseparation of baclofen (4-amino-3-p-chlorophenylbutyric acid) was achieved by CE-LIF with highly sulfated β-CD (HS-β-CD) as chiral selector. Naphthalene-2,3-dicarboxaldehyde was used for the derivatization of nonfluorescent baclofen. HS-β-CD (2%) containing 50 mM borate buffer at pH 9.5 was chosen as the optimal running electrolyte and applied to the analysis of baclofen enantiomers in human plasma. The linearity of calibration curves (R 2 ≥ 0.998) for R-(-) and S-(+)-baclofen was in the 0.1-2.0 μM concentration range. After a simple ACN-protein precipitation, the LOD of baclofen in plasma sample was found as low as 50 nM.
The optical properties of a thin film of the [Ru(bpy)3][NaCr(ox)3] network structure obtained by pulsed laser deposition are described. The luminescence shows the characteristic doublet of R lines at 14 400 cm−1 of the spin-forbidden ligand field transition 2E(t2g3)→4A2(t2g3) of the [Cr(ox)3]3− chromophore. The resonant energy migration within the R1 line shows that the three-dimensional crystallographic structure is preserved during the coating process. The observation of the R lines of [Cr(bpy)3]3+ at 13 710 cm−1 indicates that a small fraction of Cr3+ ions migrate from the oxalate network to the tris-bipyridine cation site in the cavities of the network.
In many instances, the deduction of spectroscopic parameters from electron paramagnetic resonance spectra depends on spectrum simulation and parameter optimization. We have developed two software packages based on the approximate formulae of Iwasaki for the calculation of line positions and on the Levenberg-Marquardt algorithm for nonlinear least-squares optimization. Our software applies to systems having an anisotropicg-tensor and an arbitrary number of hyperfine interactions with nuclei. They are written in the FORTRAN 77 programming language. At present, neither the nuclear quadrupolar interaction nor the nuclear Zeeman interaction terms are handled. The programs CRISAJU and EPRPOWDERFIT apply to the cases of single crystals and powders, respectively. For use in the latter, thanks to the software ODYSSEE which implements automatic differentiation of algorithms, an ancillary subroutine, which contributes to the performance of the optimization, was created automatically.
The recombination dynamics of ion pairs generated upon electron transfer quenching of perylene in the first singlet excited state by tetracyanoethylene in acetonitrile is quantitatively described by the extended unified theory of photoionization/recombination. The extension incorporates the hot recombination of the ion pair passing through the level-crossing point during its diffusive motion along the reaction coordinate down to the equilibrium state. The ultrafast hot recombination vastly reduces the yield of equilibrated ion pairs subjected to subsequent thermal charge recombination and separation into free ions. The relatively successful fit of the theory to the experimentally measured kinetics of ion accumulation/recombination and free ion yield represents a firm justification of hot recombination of about 90% of primary generated ion pairs.
UNIL088 is a water-soluble prodrug of cyclosporine A (CsA) developed for topical eye delivery. Such a prodrug has to fulfil two paradoxical requirements as it must be rapidly hydrolysed under physiological conditions but also retain a long shelf-life in aqueous media. This study has been conducted to explore the stability of UNIL088 formulated as an eyedrop solution. The stability study of the prodrug was performed over a pH range of 5–7 at 20 °C and at various ionic strengths. The molecule was more stable at pH 5 than at pH 7 with conversion rate constant of 3.2 × 10−3 and 26.0 × 10−3 days−1, respectively. The effect of temperature was studied at four different temperatures and activation energy was determined. Conversion of UNIL088 followed a pseudo-first-order kinetic with an activation energy of 79.4 kJ mol−1. Due to its low solubility, CsA generated precipitated in the solution. The average size of CsA precipitates, determined by photon spectroscopy, was 0.22 and 1.08 μm at 7 and 14 days, respectively. The hydrolysis mechanism was partially elucidated by identification of the intermediate pSer-Sar-CsA.
How useful are vibrational frequencies of isotopomeric O2 fragments for assessing local symmetry? Some simple systems and the vexing case of a galactose oxidase model
C.R. Kinsinger, B.F. Gherman, L. Gagliardi and C.J. Cramer Journal of Biological Inorganic Chemistry, 10 (7) (2005), p778-789 Keywords: copper superoxide ; copper peroxide ; Raman spectroscopy ; galactose oxidase ; density functional theory
DOI:10.1007/s00775-005-0026-0 | unige:3651 | Abstract | Article HTML | Article PDF
The tendency for mixed-isotope O2 fragments to exhibit different stretching frequencies in asymmetric environments is examined with various levels of electronic structure theory for simple peroxides and peroxyl radicals, as well as for a variety of monocopper–O2 complexes. The study of the monocopper species is motivated by their relevance to the active site of galactose oxidase. Extensive theoretical work with an experimental model characterized by Jazdzewski et al. (J. Biol. Inorg. Chem. 8:381–393, 2003) suggests that the failure to observe a splitting between 16O18O and 18O16O isotopomers cannot be taken as evidence against end-on O2 coordination. Conformational analysis on an energetic basis, however, is complicated by biradical character inherent in all of the copper–O2 singlet structures.
Quantum chemical calculations show that metal−hydride molecules are more compact when they are placed inside a fullerene cage than when they are isolated molecules. The metal−hydrogen bond distance in ZrH4 becomes 0.15 Å shorter when it is placed inside a C60 cage. Metal−polyhydride molecules with a large number of H atoms such as ScH15 and ZrH16, which are not bound as isolated molecules, are predicted to be bound inside a fullerene cage. It is also shown that two TiH16 clusters are bound inside a bicapped (9,0) carbon nanotube. Possible ways to make metal−hydrides inside C60 and nanotubes are suggested.
Multiconfigurational Theoretical Study of the Octamethyldimetalates of Cr(II), Mo(II), W(II), and Re(III): Revisiting the Correlation between the M-M Bond Length and the δ→δ* Transition Energy
F. Ferrante, L. Gagliardi, B.E. Bursten and A.P. Sattelberger Inorganic Chemistry, 44 (34) (2005), p8476-8480
DOI:10.1021/ic050406i | unige:3309 | Abstract | Article HTML | Article PDF
Four compounds containing metal−metal quadruple bonds, the [M2(CH3)8]n- ions (M = Cr, Mo, W, Re and n = 4, 4, 4, 2, respectively), have been studied theoretically using multiconfigurational quantum-chemical methods. The molecular structure of the ground state of these compounds has been determined and the energy of the δ → δ* transition has been calculated and compared with previous experimental measurements. The high negative charges on the Cr, Mo, and W complexes lead to difficulties in the successful modeling of the ground-state structures, a problem that has been addressed by the explicit inclusion of four Li+ ions in these calculations. The ground-state geometries of the complexes and the δ → δ* transition have been modeled with either excellent agreement with experiment (Re) or satisfactory agreement (Cr, Mo, and W).
The synthesis, structural characterization, and photophysical behavior of a 14-membered tetraazamacrocycle with pendant 4-dimethylaminobenzyl (DMAB) and 9-anthracenylmethyl groups is reported (L3, 6-((9-anthracenylmethyl)amino)-trans-6,13-dimethyl-13-((4-dimethylaminobenzyl)amino)-1,4,8,11-tetraazacyclotetradecane). In its free base form, this compound displays rapid intramolecular photoinduced electron transfer (PET) quenching of the anthracene emission, with both the secondary amines and the DMAB group capable of acting as electron donors. When complexed with Zn(II), the characteristic fluorescence of the anthracene chromophore is restored as the former of these pathways is deactivated by coordination. Importantly, it is shown that the DMAB group, which remains uncoordinated and PET active, acts only very weakly to quench emission, by comparison to the behavior of a model Zn complex lacking the pendant DMAB group, [ZnL2]2+ (Chart 1). By contrast, Stern−Volmer analysis of intermolecular quenching of [ZnL2]2+ by N,N-dimethylaniline (DMA) has shown that this reaction is diffusion limited. Hence, the pivotal role of the bridge in influencing intramolecular PET is highlighted.
Mixed matlokite hosts of composition BaFBrxI1−x(0≤x≤1) (pure and doped with Sm2+, Eu2+) were studied with x-ray crystallography, luminescence, Raman, and electron paramagnetic resonance (EPR) spectroscopy. Results are presented for BaFBr0.5I0.5 which demonstrate that a ferrielectric domain structure is formed due to the fact that the heavy halogen ions form separate sublattices with randomly distributed domain walls. The space group of a domain is P4 mm (No. 99). The EPR data from Eu2+ allowed to determine the volume fraction of domains.
Metal Analyses in Environmental and Pharmaceutical Samples by Capillary Electrophoresis with Methyl 3-Amino-3-(pyridin-3-yl)propanoate Dihydrochloride as a New Ion-Pairing Reagent
G. Kavran Belin and F.O. Gülaçar Helvetica Chimica Acta, 88 (8) (2005), p2322-2332
DOI:10.1002/hlca.200590167 | unige:3264 | Abstract | Article PDF
Separation and determination of some common metal ions was achieved with methyl 3-amino-3-(pyridin-3-yl)propanoate dihydrochloride (MAPP) as an ion-pairing reagent and pyridine as a detectable counter-ion for indirect UV detection at 254 nm. The effects of the complexing reagent and chromophore concentrations, applied voltage, and organic solvent content on the separation were investigated. The optimized separation was carried out in a running electrolyte containing 16 mM MAPP and 20 mM pyridine at pH 4.0 and was successfully applied to the qualitative and quantitative analysis of Li+, Na+, Mg2+, Ca2+, Ba2+, Ni2+, and Zn2+ in pharmaceutical vitamin preparations and various water samples.
The orbital-free frozen-density embedding scheme within density-functional theory [ T. A. Wesolowski and A. Warshel, J. Phys. Chem. 97, 8050 (1993) ] is applied to the calculation of induced dipole moments of the van der Waals complexes CO2⋯X (X = He, Ne, Ar, Kr, Xe, Hg). The accuracy of the embedding scheme is investigated by comparing to the results of supermolecule Kohn-Sham density-functional theory calculations. The influence of the basis set and the consequences of using orbital-dependent approximations to the exchange-correlation potential in embedding calculations are examined. It is found that in supermolecular Kohn-Sham density-functional calculations, different common approximations to the exchange-correlation potential are not able to describe the induced dipole moments correctly and the reasons for this failure are analyzed. It is shown that the orbital-free embedding scheme is a useful tool for applying different approximations to the exchange-correlation potential in different subsystems and that a physically guided choice of approximations for the different subsystems improves the calculated dipole moments significantly.
Preface to the symposium: Explicit Density Functional of the Kinetic Energy in Computer Simulations at Atomistic Level
Study of Mn2+-doped fluoroperovskites by means of the Kohn-Sham Constrained Electron Density embedding formalism
J.M. Garcia-Lastra, , M.T. Barriuso, J.A. Aramburu and M. Moreno Lecture Series on Computer and Computational Sciences, 4 (2005), p1445-1449 unige:3266
Covalent bonding is commonly described by Lewis's theory, with an electron pair shared between two atoms constituting one full bond. Beginning with the valence bond description for the hydrogen molecule, quantum chemists have further explored the fundamental nature of the chemical bond for atoms throughout the periodic table, confirming that most molecules are indeed held together by one electron pair for each bond. But more complex binding may occur when large numbers of atomic orbitals can participate in bond formation. Such behaviour is common with transition metals. When involving heavy actinide elements, metal–metal bonds might prove particularly complicated. To date, evidence for actinide–actinide bonds is restricted to the matrix-isolation of uranium hydrides, including H2U–UH2, and the gas-phase detection and preliminary theoretical study of the uranium molecule, U2. Here we report quantum chemical calculations on U2, showing that, although the strength of the U2 bond is comparable to that of other multiple bonds between transition metals, the bonding pattern is unique. We find that the molecule contains three electron-pair bonds and four one-electron bonds (that is, 10 bonding electrons, corresponding to a quintuple bond), and two ferromagnetically coupled electrons localized on one U atom each—so all known covalent bonding types are contributing.
The U+O chemi-ionization reaction has been investigated by quantum chemical methods. Potential-energy curves have been calculated for several electronic states of UO and UO+. Comparison with the available spectroscopic and thermodynamic values for these species is reported and a mechanism for the chemi-ionization reaction U+O→UO++e− is proposed. The U+O and Sm+O chemi-ionization reactions are the first two metal-plus-oxidant chemi-ionization reactions to be studied theoretically in this way.
Quantum chemical calculations, based on multiconfigurational wave functions and including relativistic effects, show that the U22+ system has a large number of low-lying electronic states with S of 0 to 2 and Λ ranging from zero to ten. These states share a very small bond length of about 2.30 Å, compared to 2.43 Å in neutral U2. The Coulomb explosion to 2 U+ lowers the energy by only 1.6 eV and is separated by a broad barrier.
The gas-phase electronic spectra of 2-(2'-hydroxybenzoyl)pyrrole and 2-(2'-methoxybenzoyl)pyrrole have been determined using multiconfigurational perturbation theory (CASPT2). Solvatochromic spectral shifts for these molecules have been measured in cyclohexane and methanol and the electrostatic components of these shifts have been estimated using the vertical electrostatic model (VEM 4.2) developed for the configuration interaction with single excitations model implemented with the intermediate neglect of differential overlap Hamiltonian (CIS/INDO/S2). Comparison between theory and experiment and an interpretation of the main spectral differences between the two substituted pyrroles and their solvation are presented.
The electronic spectrum of the UO2 molecule has been determined using multiconfigurational wave functions together with the inclusion spin−orbit coupling. The molecule has been found to have a (5fφ)(7s), 3Φ2u, ground state. The lowest state of gerade symmetry, 3H4g, corresponding to the electronic configuration (5f)2 was found 3330 cm-1 above the ground state. The computed energy levels and oscillator strengths were used for the assignment of the experimental spectrum in the energy range 17 000−19 000 and 27 000−32 000 cm-1.
The coordination environment of uranyl in water has been studied using a combined quantum mechanical and molecular dynamics approach. Multiconfigurational wave function calculations have been performed to generate pair potentials between uranyl and water. The quantum chemically determined energies have been used to fit parameters in a polarizable force field with an added charge transfer term. Molecular dynamics simulations have been performed for the uranyl ion and up to 400 water molecules. The results show a uranyl ion with five water molecules coordinated in the equatorial plane. The U−O(H2O) distance is 2.40 Å, which is close to the experimental estimates. A second coordination shell starts at about 4.7 Å from the uranium atom. No hydrogen bonding is found between the uranyl oxygens and water. Exchange of waters between the first and second solvation shell is found to occur through a path intermediate between association and interchange. This is the first fully ab initio determination of the solvation of the uranyl ion in water.
In this study, we investigate the performance of the frozen-density embedding scheme within density-functional theory [ J. Phys. Chem. 97, 8050 (1993) ] to model the solvent effects on the electron-spin-resonance hyperfine coupling constants (hfcc’s) of the H2NO molecule. The hfcc’s for this molecule depend critically on the out-of-plane bending angle of the NO bond from the molecular plane. Therefore, solvent effects can have an influence on both the electronic structure for a given configuration of solute and solvent molecules and on the probability for different solute (plus solvent) structures compared to the gas phase. For an accurate modeling of dynamic effects in solution, we employ the Car-Parrinello molecular-dynamics (CPMD) approach. A first-principles-based Monte Carlo scheme is used for the gas-phase simulation, in order to avoid problems in the thermal equilibration for this small molecule. Calculations of small H2NO-water clusters show that microsolvation effects of water molecules due to hydrogen bonding can be reproduced by frozen-density embedding calculations. Even simple sum-of-molecular-densities approaches for the frozen density lead to good results. This allows us to include also bulk solvent effects by performing frozen-density calculations with many explicit water molecules for snapshots from the CPMD simulation. The electronic effect of the solvent at a given structure is reproduced by the frozen-density embedding. Dynamic structural effects in solution are found to be similar to the gas phase. But the small differences in the average structures still induce significant changes in the computed shifts due to the strong dependence of the hyperfine coupling constants on the out-of-plane bending angle.
The effect of the excitation wavelength on the charge recombination (CR) dynamics of several donor−acceptor complexes (DACs) composed of benzene derivatives as donors and of tetracyanoethylene or pyromellitic dianhydride as acceptors has been investigated in polar solvents using ultrafast time-resolved spectroscopy. Three different wavelength effects have been observed. (1) With complexes exhibiting two well-separated charge-transfer bands, the CR dynamics was found to be slower by a factor of about 1.5 upon excitation in the high-energy band. This effect was measured in both fast and slow relaxing solvents and was discussed in terms of different DAC geometries. (2) When the CR is faster than diffusive solvation, a slowing down of the CR with increasing excitation wavelength accompanied by an increase of the nonexponential character of the dynamics was measured. This effect appears only when exciting on the red edge of the charge-transfer absorption band. (3) When the driving force for CR is small, both nonequilibrium (hot) and thermally activated CR pathways can be operative. The results obtained with such a complex indicate that the relative contribution of these two paths depends on the excitation wavelength.
One-Electron Equations for Embedded Electron Density and Their Applications to Study Electronic Structure of Atoms and Molecules in Condensed Phase
M. Dulak, R. Kevorkyants, F. Tran and Chimia, 59 (7-8) (2005), p488-492
DOI:10.2533/000942905777676146 | unige:3269 | Abstract | Article PDF
Recent applications of one-electron equations for embedded electron density introduced originally for multi-level modeling of solvated molecules (T.A. Wesolowski, A. Warshel, J. Phys. Chem.1993, 97, 8050) are reviewed. The considered applications concern properties directly related to the electronic structure of molecules (or an atom) in condensed phase such as: i) localized electronic excitations in a chromophore involved in a hydrogen-bonded intermolecular complex; ii) UV/Vis spectra of acetone in water; and iii) energy levels of f-orbitals for lanthanide cations in a crystalline environment. For each case studied, the embedding potential is represented graphically and its qualitative features are discussed.
The absorption spectra of aminocoumarin C151 in water and n-hexane solution are investigated by an explicit quantum chemical solvent model. We improved the efficiency of the frozen-density embedding scheme, as used in a former study on solvatochromism (J. Chem. Phys. 2005, 122, 094115) to describe very large solvent shells. The computer time used in this new implementation scales approximately linearly (with a low prefactor) with the number of solvent molecules. We test the ability of the frozen-density embedding to describe specific solvent effects due to hydrogen bonding for a small example system, as well as the convergence of the excitation energy with the number of solvent molecules considered in the solvation shell. Calculations with up to 500 water molecules (1500 atoms) in the solvent system are carried out. The absorption spectra are studied for C151 in aqueous or n-hexane solution for direct comparison with experimental data. To obtain snapshots of the dye molecule in solution, for which subsequent excitation energies are calculated, we use a classical molecular dynamics (MD) simulation with a force field adapted to first-principles calculations. In the calculation of solvatochromic shifts between solvents of different polarity, the vertical excitation energy obtained at the equilibrium structure of the isolated chromophore is sometimes taken as a guess for the excitation energy in a nonpolar solvent. Our results show that this is, in general, not an appropriate assumption. This is mainly due to the fact that the solute dynamics is neglected. The experimental shift between n-hexane and water as solvents is qualitatively reproduced, even by the simplest embedding approximation, and the results can be improved by a partial polarization of the frozen density. It is shown that the shift is mainly due to the electronic effect of the water molecules, and the structural effects are similar in n-hexane and water. By including water molecules, which might be directly involved in the excitation, in the embedded region, an agreement with experimental values within 0.05 eV is achieved.
The cubic Prussian blue analogue Mn3[Mn(CN)6]2 · 15 H2O, which has the advantage of being transparent and magnetic (TN = 35 K) at the same time, has been investigated by density functional theory (DFT) calculations. The three-dimensional structure is built of MnII ions linked to MnIII ions by μ-bridging cyanides, to form a crystal structure, which is related to the NaCl type. In a first step, the relative stabilities of the mononuclear complexes [Mn(CN)6]z- (z = 2 to 4) have been studied as a function of the oxidation state, spin configuration, and the linkage isomerism of the cyanide ligand. The results we have obtained by this investigation are in good agreement with our chemical expertise. In addition, the calculations have been extended to the dinuclear [Mn2(CN)11]z- (z = 5 and 6) clusters. Furthermore, we used DFT to model the magnetic properties as well as the 3T1 → 1T2 transition, which has been observed by single-crystal near-IR spectra of Mn3[Mn(CN)6]2 · 15 H2O.
Thermal- and Photoinduced Spin-State Switching in an Unprecedented Three-Dimensional Bimetallic Coordination Polymer
V. Niel, A.L. Thompson, A.E. Goeta, C. Enachescu, , A. Galet, M.C. Muñoz and J.A. Real Chemistry - A European Journal, 11 (7) (2005), p2047-2060 Keywords: argentophilic interactions; coordination modes; polymers; spin crossover
DOI:10.1002/chem.200400930 | unige:3271 | Abstract | Article HTML | Article PDF
The compound {Fe(pmd)[Ag(CN)2][Ag2(CN)3]} (pmd=pyrimidine) was synthesized and characterized. Magnetic, calorimetric and single crystal visible spectroscopic studies demonstrate the occurrence of a two-step high-spin (HS) ↔ low-spin (LS) transition. The critical temperatures are Tc1=185 and Tc2=148 K. Each step involves ~50 % of the iron centers, with the low-temperature step showing a hysteresis of 2.5 K. The enthalpy and entropy variations associated with the two steps are ΔH1=3.6±0.4 kJ mol-1 and ΔS1=19.5±3 J K-1 mol-1; ΔH2=4.8±0.4 kJ mol-1 and ΔS2=33.5±3 J K-1 mol-1. Photomagnetic and visible spectroscopy experiments show that below 50 K, where the LS state is the thermodynamically stable state, the compound can be switched quantitatively to the HS state using green-red light (550-650 nm). HS-to-LS relaxation experiments in the dark at temperatures between 15 and 55 K show that the relaxation takes place via a two-step cooperative process, which was analyzed in the context of the mean field theory. The crystal structure has been studied at 290, 220, 170, 90 and 30 K together with 30 K after irradiation. The compound adopts monoclinic symmetry (P21/c, Z=16) at all temperatures. There are five [FeN6] pseudo-octahedral sites linked by pmd, [Ag(CN)2]- and [Ag2(CN)3]- bridging ligands to form an unprecedented three-dimensional (6,6) topology. The structural analysis allows for an understanding of the microscopic mechanism of the two-step behavior of the thermally induced spin transition as well as the corresponding relaxation of the photoexcited compound based on the individual changes of the five sites. Synergy between metallophilic interactions and the spin transition is also shown by the variation of the Ag…Ag distances. Correlations between the variation of the unit-cell volume and the change of Ag…Ag interactions within each step with the asymmetric change of the anomalous heat capacity have also been inferred.
Comparison of density functionals for energy and structural differences between the high- [5T2g:(t2g)4(eg)2] and low- [1A1g:(t2g)6(eg)0] spin states of iron(II) coordination compounds. II. More functionals and the hexaminoferrous cation, [Fe(NH3)6]2+
A. Fouqueau, M.E. Casida, , and F. Neese Journal of Chemical Physics, 122 (4) (2005), p44110
DOI:10.1063/1.1839854 | unige:3272 | Abstract | Article HTML | Article PDF
The ability of different density functionals to describe the structural and energy differences between the high- [5T2g:(t2g)4(eg)2] and low- [1A1g:(t2g)6(eg)0] spin states of small octahedral ferrous compounds is studied. This work is an extension of our previous study of the hexaquoferrous cation, [Fe(H2O)6]2+, [J. Chem. Phys. 120, 9473 (2004)] to include a second compound—namely, the hexaminoferrous cation, [Fe(NH3)6]2+—and several additional functionals. In particular, the present study includes the highly parametrized generalized gradient approximations (GGAs) known as HCTH and the meta-GGA VSXC [which together we refer to as highly parametrized density functionals (HPDFs)], now readily available in the GAUSSIAN03 program, as well as the hybrid functional PBE0. Since there are very few experimental results for these molecules with which to compare, comparison is made with best estimates obtained from second-order perturbation theory-corrected complete active space self-consistent field (CASPT2) calculations, with spectroscopy oriented configuration interaction (SORCI) calculations, and with ligand field theory (LFT) estimations. While CASPT2 and SORCI are among the most reliable ab initio methods available for this type of problem, LFT embodies many decades of empirical experience. These three methods are found to give coherent results and provide best estimates of the adiabatic low-spin–high-spin energy difference, ΔELHadia, of 12 000–13 000 cm−1 for [Fe(H2O)6]2+ and 9 000–11 000 cm−1 for [Fe(NH3)6]2+. All functionals beyond the purely local approximation produce reasonably good geometries, so long as adequate basis sets are used. In contrast, the energy splitting, ΔELHadia, is much more sensitive to the choice of functional. The local density approximation severely over stabilizes the low-spin state with respect to the high-spin state. This “density functional theory (DFT) spin pairing-energy problem” persists, but is reduced, for traditional GGAs. In contrast the hybrid functional B3LYP underestimates ΔELHadia by a few thousands of wave numbers. The RPBE GGA of Hammer, Hansen, and Nørskov gives good results for ΔELHadia as do the HPDFs, especially the VSXC functional. Surprisingly the HCTH functionals actually over correct the DFT spin pairing-energy problem, destabilizing the low-spin state relative to the high-spin state. Best agreement is found for the hybrid functional PBE0.
Tuning the Decay Time of Lanthanide-Based Near Infrared Luminescence from Micro- to Milliseconds through d->f Energy Transfer in Discrete Heterobimetallic Complexes
S. Torelli, D. Imbert, M. Cantuel, G. Bernardinelli, S. Delahaye, , J.-C.G. Bünzli and C. Piguet Chemistry - A European Journal, 11 (11) (2005), p3228-3242 Keywords: energy transfer; helicates; heterobimetallic complexes; lanthanides; near infrared luminescence
DOI:10.1002/chem.200401158 | unige:3273 | Abstract | Article HTML | Article PDF
Inert and optically active pseudo-octahedral CrIIIN6 and RuIIN6 chromophores have been incorporated by self-assembly into heterobimetallic triple-stranded helicates HHH-[CrLnL3]6+ and HHH-[RuLnL3]5+. The crystal structures of [CrLnL3](CF3SO3)6 (Ln=Nd, Eu, Yb, Lu) and [RuLnL3](CF3SO3)5 (Ln=Eu, Lu) demonstrate that the helical structure can accommodate metal ions of different sizes, without sizeable change in the intermetallic M…Ln distances. These systems are ideally suited for unravelling the molecular factors affecting the intermetallic nd→4f communication. Visible irradiation of the CrIIIN6 and RuIIN6 chromophores in HHH-[MLnL3]5/6+ (Ln=Nd, Yb, Er; M=Cr, Ru) eventually produces lanthanide-based near infrared (NIR) emission, after directional energy migration within the complexes. Depending on the kinetic regime associated with each specific d-f pair, the NIR luminescence decay times can be tuned from micro- to milliseconds. The origin of this effect, together with its rational control for programming optical functions in discrete heterobimetallic entities, are discussed.
Assessment of Density Functionals for the High-Spin/Low-Spin Energy Difference in the Low-Spin Iron(II) Tris(2,2'-bipyridine) Complex
, A. Vargas, , A. Fouqueau and M.E. Casida ChemPhysChem, 6 (7) (2005), p1393-1410 Keywords: density functional calculations; iron(II) complexes; time-resolved spectroscopy; high-spin->low-spin relaxation; spin crossover
DOI:10.1002/cphc.200400584 | unige:3621 | Abstract | Article HTML | Article PDF
In the iron(II) low-spin complex [Fe(bpy)3]2+, the zero-point energy difference between the 5T2g(t42ge2g) high-spin and the 1A1g(t62g) low-spin states, ΔE0HL, is estimated to lie in the range of 2500-5000 cm-1. This estimate is based on the low-temperature dynamics of the high-spin→low-spin relaxation following the light-induced population of the high-spin state and on the assumption that the bond-length difference between the two states ΔrHL is equal to the average value of ≈0.2 Å, as found experimentally for the spin-crossover system. Calculations based on density functional theory (DFT) validate the structural assumption insofar as the low-spin-state optimised geometries are found to be in very good agreement with the experimental X-ray structure of the complex and the predicted high-spin geometries are all very close to one another for a whole series of common GGA (PB86, PW91, PBE, RPBE) and hybrid (B3LYP, B3LYP*, PBE1PBE) functionals. This confirmation of the structural assumption underlying the estimation of ΔE0HL from experimental relaxation rate constants permits us to use this value to assess the ability of the density functionals for the calculation of the energy difference between the HS and LS states. Since the different functionals give values from -1000 to 12000 cm-1, the comparison of the calculated values with the experimental estimate thus provides a stringent criterion for the performance of a given functional. Based on this comparison the RPBE and B3LYP* functionals give the best agreement with experiment.
The synthesis of tetrakis(tetrathiafulvalene)-annulated metal-free and metallophthalocyanines 5−8 via the tetramerization of the phthalonitrile derivative 4 is reported. All of them have been fully characterized by electronic absorption spectroscopy, thin-layer cyclic voltammetry, mass spectrometry, and elemental analysis. Their solution electrochemical data show two reversible four-electron oxidation waves, indicating that these fused systems are strong π-electron donors, which give rise to tetra- or octaradical cation species. For the metal-free phthalocyanine 5, additionally a reversible one-electron wave was found in the negative direction arising from the reduction of the macrocycle. Moreover, the tetrathiafulvalene unit acts as an efficient reductive electron-transfer quencher for the phthalocyanine emission, but upon its oxidation, an intense luminescence is switched on.
Electrochemical oxidation of (C6H5)3P=N(C6H5) and (C6H5)3P=N(C6H5) leads to EPR spectra which reveal the dimeric structure of the resulting radical cation. In contrast to this behaviour, oxidation of bis-iminophosphorane leads to [(C6H5)3P=N(C6H4)N=P(C6H5)3]•+: In these species the unpaired electron is delocalized on the N(C6H4)N moiety and the persistency of the radical depends upon the relative position of the two P=N bonds.
Visible pump−probe spectroscopy has been used to identify and characterize short-lived metal-to-metal charge transfer (MMCT) excited states in a group of cyano-bridged mixed-valence complexes of the formula [LCoIIINCMII(CN)5]-, where L is a pentadentate macrocyclic pentaamine (L14) or triamine-dithiaether (L14S) and M is Fe or Ru. Nanosecond pump−probe spectroscopy on frozen solutions of [L14CoIIINCFeII(CN)5]- and [L14SCoIIINCFeII(CN)5]- at 11 K enabled the construction of difference transient absorption spectra that featured a rise in absorbance in the region of 350−400 nm consistent with the generation of the ferricyanide chromophore of the photoexcited complex. The MMCT excited state of the Ru analogue [L14CoIIINCRuII(CN)5]- was too short-lived to allow its detection. Femtosecond pump−probe spectroscopy on aqueous solutions of [L14CoIIINCFeII(CN)5]- and [L14SCoIIINCFeII(CN)5]- at room temperature enabled the lifetimes of their CoII−FeIII MMCT excited states to be determined as 0.8 and 1.3 ps, respectively.
The emission from two photoactive 14-membered macrocyclic ligands, 6-((naphthalen-1-ylmethyl)-amino)-trans-6,13-dimethyl-13-amino-1,4,8,11-tetraaza-cyclotetradecane (L1) and 6-((anthracen-9-ylmethyl)-amino)-trans-6,13-dimethyl-13-amino-1,4,8,11-tetraaza-cyclotetradecane (L2) is strongly quenched by a photoinduced electron transfer (PET) mechanism involving amine lone pairs as electron donors. Time-correlated single photon counting (TCSPC), multiplex transient grating (TG), and fluorescence upconversion (FU) measurements were performed to characterize this quenching mechanism. Upon complexation with the redox inactive metal ion, Zn(II), the emission of the ligands is dramatically altered, with a significant increase in the fluorescence quantum yields due to coordination-induced deactivation of the macrocyclic amine lone pair electron donors. For [ZnL2]2+, the substituted exocyclic amine nitrogen, which is not coordinated to the metal ion, does not quench the fluorescence due to an inductive effect of the proximal divalent metal ion that raises the ionization potential. However, for [ZnL1]2+, the naphthalene chromophore is a sufficiently strong excited-state oxidant for PET quenching to occur.
Metal (4f)−ligand (Cl 3p) bonding in LnCl63- (Ln = Ce to Yb) complexes has been studied on the basis of 4f→4f and Cl,3p→4f charge-transfer spectra and on the analysis of these spectra within the valence bond configuration interaction model to show that mixing of Cl 3p into the Ln 4f ligand field orbitals does not exceed 1%. Contrary to this, Kohn−Sham formalism of density functional theory using currently available approximations to the exchange-correlation functional tends to strongly overestimate 4f−3p covalency, yielding, for YbCl63-, a much larger mixing of Cl 3p→4f charge transfer into the f13 ionic ground-state wave function. Thus, ligand field density functional theory, which was recently developed and applied with success to complexes of 3d metals in our group, yields anomalously large ligand field splittings for Ln, the discrepancy with experiment increasing from left to the right of the Ln 4f series. It is shown that eliminating artificial ligand-to-metal charge transfer in Kohn−Sham calculations by a procedure described in this work leads to energies of 4f−4f transitions in good agreement with experiment. We recall an earlier concept of Ballhausen and Dahl which describes ligand field in terms of a pseudopotential and give a thorough analysis of the contributions to the ligand field from electrostatics (crystal field) and exchange (Pauli) repulsion. The close relation of the present results with those obtained using the first-principles based and electron density dependent effective embedding potential is pointed out along with implications for applications to other systems.
Using the Diphosphanyl Radical as a Potential Spin Label: Effect of Motion on the EPR Spectrum of an R1(R2)P--PR1 Radical
L. Cataldo, C. Dutan, S.K. Misra, S. Loss, H. Grützmacher and Chemistry - A European Journal, 11 (11) (2005), p3463-3468 Keywords: EPR spectroscopy; internal rotation; phosphorus; radicals; spin labeling
DOI:10.1002/chem.200401276 | unige:3277 | Abstract | Article PDF
The EPR spectrum of the novel radical Mes*(CH3)P—PMes* (Mes*=2,4,6-(tBu)3C6H2) was measured in the temperature range 100-300 K, and was found to be drastically temperature dependent as a result of the large anisotropy of the 31P hyperfine tensors. Below 180 K, a spectrum of the liquid solution is accurately simulated by calculating the spectral modifications due to slow tumbling of the radical. To achieve this simulation, an algorithm was developed by extending the well-known nitroxide slow-motion simulation technique for the coupling of one electron spin to two nuclear spins. An additional dynamic process responsible for the observed line broadening was found to occur between 180 K and room temperature; this broadening is consistent with an exchange between two conformations. The differences between the isotropic 31P couplings associated with the two conformers are shown to be probably due to an internal rotation about the P—P bond.
Approximating the kinetic energy functional Ts[ρ]: lessons from four-electron systems.
It is shown that for pairs of electron densities (ρα and ρα‾) obtained from mixing orbital densities in a spin-compensated four-electron system, the kinetic energy functional of the non-interacting reference system (Ts[ρ]) satisfies the general inequality Ts[ρα +ρα‾] ≥ Ts[ρα]+ Ts[ρα‾]. This condition is discussed in the context of the gradient expansion approximation to Ts[ρ] and its possible use in variational orbital-free calculations. In particular, it is shown that the second-order term of the analytic form given by von Weizsäcker violates this inequality for the considered pairs.
A new four-wave-mixing technique with evanescent optical fields generated by total internal reflection at a liquid-liquid interface is described. Several applications of this method to measure thermoacoustic and dynamic properties near liquid-liquid interfaces are presented.
An optical investigation of the properties of europium (II) ions introduced in Ba2Mg3F10 single crystals is presented. The spectra and time-dependence of both the inter-configurational (f–d) and the intra-configurational (f–f) transitions are described. The emission spectrum consists of two emitting Eu2+ centres, each showing one broad f–d band and one 6P7/2 quartet. The thermal equilibrium between the f–f and f–d emitting states is investigated and found to take place on a microsecond timescale for one of the two Eu2+ centres. The spectroscopic results combined with numerical modelling of the influence of the host crystal on the 6P7/2 energy scheme allow the assignment of each f–f and f–d emission to its corresponding Eu2+ centre.
Transient grating experiments performed with evanescent fields resulting from total internal reflection at an interface between a polar absorbing solution and an apolar transparent solvent are described. The time evolution of the diffracted intensity was monitored from picosecond to millisecond time scales. The diffracted signal originates essentially from two density phase gratings: one in the absorbing phase induced by thermal expansion and one in the transparent solvent due to electrostriction. A few nanoseconds after excitation, the latter grating is replaced by a thermal grating due to thermal diffusion from the absorbing phase. The speed of sound and the acoustic attenuation measured near the interface are found to be essentially the same as in the bulk solutions. However, after addition of a surfactant in the polar phase, the speed of sound near the interface differs substantially from that in the bulk with the same surfactant concentration. This effect is interpreted in terms of adsorption at the liquid/liquid interface. Other phenomena, which are not observed in bulk experiments, such as acoustic echoes and a fast oscillation of the signal intensity, are also described.
The merits of the frozen-density embedding scheme to model solvatochromic shifts.
J. Neugebauer, M.J. Louwerse, E.J. Baerends and Journal of Chemical Physics, 122 (9) (2005), p94115 Keywords: density functional theory; excited states; molecular electronic states; solvent effects; charge exchange; electron correlations; organic compounds; molecular dynamics method
DOI:10.1063/1.1858411 | unige:3279 | Abstract | Article HTML | Article PDF
We investigate the usefulness of a frozen-density embedding scheme within density-functional theory [ J. Phys. Chem. 97, 8050 (1993) ] for the calculation of solvatochromic shifts. The frozen-density calculations, particularly of excitation energies have two clear advantages over the standard supermolecule calculations: (i) calculations for much larger systems are feasible, since the time-consuming time-dependent density functional theory (TDDFT) part is carried out in a limited molecular orbital space, while the effect of the surroundings is still included at a quantum mechanical level. This allows a large number of solvent molecules to be included and thus affords both specific and nonspecific solvent effects to be modeled. (ii) Only excitations of the system of interest, i.e., the selected embedded system, are calculated. This allows an easy analysis and interpretation of the results. In TDDFT calculations, it avoids unphysical results introduced by spurious mixings with the artificially too low charge-transfer excitations which are an artifact of the adiabatic local-density approximation or generalized gradient approximation exchange-correlation kernels currently used. The performance of the frozen-density embedding method is tested for the well-studied solvatochromic properties of the n→π* excitation of acetone. Further enhancement of the efficiency is studied by constructing approximate solvent densities, e.g., from a superposition of densities of individual solvent molecules. This is demonstrated for systems with up to 802 atoms. To obtain a realistic modeling of the absorption spectra of solvated molecules, including the effect of the solvent motions, we combine the embedding scheme with classical molecular dynamics (MD) and Car-Parrinello MD simulations to obtain snapshots of the solute and its solvent environment, for which then excitation energies are calculated. The frozen-density embedding yields estimated solvent shifts in the range of 0.20–0.26 eV, in good agreement with experimental values of between 0.19 and 0.21 eV.
The photophysics of the dye Lucifer Yellow ethylenediamine (LYen) has been investigated in various polar solvents. The main deactivation pathways of its first singlet excited state are the fluorescence and the intersystem crossing. In water, non-radiative decay by intermolecular proton transfer becomes a significant deactivation channel. The early fluorescence dynamics, which was investigated in liquids and in reverse micelles, was found to depend substantially on the environment. An important static quenching of LYen by tryptophan and indole occurring in the subpicosecond timescale was observed. The use of the fluorescence dynamics of LYen as a local probe is illustrated by preliminary results obtained with a biotinylated Lucifer Yellow derivative complexed with avidin.
Effects of milling, doping and cycling of NaAlH4 studied by vibrational spectroscopy and X-ray diffraction
S. Gomes, G. Renaudin, , K. Yvon, M.P. Sulic and C.M. Jensen Journal of Alloys and Compounds, 390 (1-2) (2005), p305-313 Keywords: Hydrogen storage materials; Infrared and Raman spectroscopy; X-ray diffraction; Alanates
DOI:10.1016/j.jallcom.2004.08.036 | unige:3280 | Abstract | Article PDF
The effects of milling and doping NaAlH4 with TiCl3, TiF3 and Ti(OBun)4, and of cycling doped NaAlH4 have been investigated by infrared (IR) and Raman spectroscopy and X-ray powder diffraction. Milling and doping produce similar effects. Both decrease the crystal domain size (~900 Å for milled and ~700 Å for doped, as compared to ~1600 Å for unmilled and undoped NaAlH4) and increase anisotropic strain (by a factor >2.5, mainly along c). They also influence structure parameters such as the axial ratio c/a, cell volume and atomic displacement amplitudes. They show IR line shifts by ~15 cm−1 to higher frequencies for the Al–H asymmetric stretching mode ν3, and by ~20 cm−1 to lower frequencies for one part of the H–Al–H asymmetric bending mode ν4, thus suggesting structural changes in the local environment of the [AlH4]− units. The broad ν3 bands become sharpened which suggests a more homogeneous local environment of the [AlH4]− units, and there appears a new vibration at 710 cm−1. The Raman data show no such effects. Cycling leads to an increase in domain size (1200–1600 Å), IR line shifts similar to doped samples (except for TiF3: downward shift by ~10 cm−1) and a general broadening of the ν3 mode that depend on the nature of the dopants. These observations support the idea that some Ti diffusion and substitution into the alanate lattice does occur, in particular during cycling, and that this provides the mechanism through which Ti-doping enhances kinetics during re-crystallisation.
Oxidation of the square planar Rh(I) complex [Rh(SPSMe)(PPh3)] (SPSMe = 1-methyl-1-P-2,6-bis(diphenylphosphinosulfide)-3,5-(bisphenyl)-phosphinine) (1) based on mixed SPS-pincer ligand with hexachloroethane yielded the Rh(III) dichloride complex [Rh(SPSMe)(PPh3)Cl2] (2), which was structurally characterized. The homoleptic Rh(III) complex [Rh(SPSMe)2][Cl] (4) was obtained via the stoichiometric reaction of SPSMe anion (3) with [Rh(tht)3Cl3] (tht = tetrahydrothiophene). Complex 4, which was characterized by X-ray diffraction, was also studied by cyclic voltammetry. Complex 4 can be reversibly reduced at E = −1.16 V (vs SCE) to give the neutral 19-electron Rh(II) complex [Rh(SPSMe)2] (5). Accordingly, complex 5 could be synthesized via chemical reduction of 4 with zinc dust. EPR spectra of complex 5 were obtained after electrochemical or chemical reduction of 4 in THF or CH2Cl2. Hyperfine interaction with two equivalent 31P nuclei was observed in liquid solution, while an additional coupling with a spin 1/2 nucleus, probably 103Rh, was detected in frozen solution. The 31P couplings are consistent with DFT calculations that predict a drastic increase in the axial P−S bond lengths when reducing (SPSMe)2Rh(III). In the reduced complex, the unpaired electron is mainly localized in a rhodium dz2 orbital, consistent with the g-anisotropy measured at 100 K.
Transient Holographic Grating Techniques in Chemical Dynamics
in "Encyclopedia of modern optics"
R. D. Guenther, D. G. Steel and L. Bayvel Eds; Oxford: Elsevier,
1 (2005), p73-82 unige:3931
Geometry and interaction energy in complexes of the Ph-L type (L = Ar, N2, CO, H2O, NH3, CH4, CH3OH, CH3F) involving neutral or cationic phenol were determined using the density functional theory formalism based on the minimization of the total energy bifunctional and gradient-dependent approximations for its exchange-correlation and nonadditive kinetic-energy parts. For the neutral complexes the calculated interaction energies range from 1 kcal/mol for the Ph-Ar complex to about 10 kcal/mol for Ph-NH3. The interactions are stronger if the cationic phenol is involved (up to 25 kcal/mol). It is found, except for neutral Ph-Ar, that the hydrogen-bonded structure is more stable than the π-bound one. Calculated interaction energies (De) correlate well with the experimental dissociation energies (D0).
The basis set effect on the results of the minimization of the total energy bifunctional E[ρA, ρB] approximated at the local density approximation level is analyzed for several weak intermolecular complexes. The considered complexes formed by hydrocarbons at the equilibrium geometry were previously studied by means of the same formalism using large decontracted basis sets consisting of Gaussian-type atomic orbitals limited to s-, p-, and d-functions. In this work, we use our two new computer implementations of the formalism to analyze the basis set effects accompanying changing the basis sets from Gaussian-type orbitals to Slater-type orbitals and including f-functions. We show that the interaction energies, their components, and the energies of the highest occupied molecular orbital converge within a range of 0.07 kcal/mol, 0.08 kcal/mol, and 0.06 eV, respectively.
The radical cation of the redox active ligand 3,4-dimethyl-3',4'-bis-(diphenylphosphino)-tetrathiafulvalene ( P2) has been chemically and electrochemically generated and studied by EPR spectroscopy. Consistent with DFT calculations, the observed hyperfine structure (septet due to the two methyl groups) indicates a strong delocalization of the unpaired electron on the central S2C=CS2 part of the tetrathiafulvalene (TTF) moiety and zero spin densities on the phosphine groups. In contrast with the ruthenium(0) carbonyl complexes of P2 whose one-electron oxidation directly leads to decomplexation and produces P2•+, one-electron oxidation of [Fe( P2)(CO)3] gives rise to the metal-centered oxidation species [Fe(I)( P2)(CO)3], characterized by a coupling with two 31P nuclei and a rather large g-anisotropy. The stability of this complex is however modest and, after some minutes, the species resulting from the scission of a P–Fe bond is detected. Moreover, in presence of free ligand, [Fe(I)( P2)(CO)3] reacts to give the complex [Fe(I)( P2)2(CO)] containing two TTF fragments. The two-electron oxidation of [Fe( P2)(CO)3] leads to decomplexation and to the P2•+ spectrum. Besides EPR spectroscopy, cyclic voltammetry as well as FTIR spectroelectrochemistry are used in order to explain the behaviour of [Fe( P2)(CO)3] upon oxidation. This behaviour notably differs from that of the Ru(0) counterpart. This difference is tentatively rationalized on the basis of structural arguments.
2004
Inversion of enantioselectivity in the platinum-catalyzed hydrogenation of substituted acetophenones
R. Hess, A. Vargas, T. Mallat, and A. Baiker Journal of Catalysis, 222 (1) (2004), p117-128 Keywords: Asymmetric hydrogenation; Ring-substituted acetophenones; Ethers of cinchonidine; Inversion of enantioselectivity; 3,5-Di(trifluoromethyl)acetophenone
DOI:10.1016/j.jcat.2003.10.021 | unige:14708 | Article HTML | Article PDF
The enantioselective hydrogenation of ring-substituted acetophenones that possess no functional group in the α-position to the keto group represents the latest extension of the application range of the Pt–cinchona system. The influence of the type of solvent, pressure, temperature, and modifier/substrate/Pt molar ratios was investigated in the hydrogenation of 3,5-di(trifluoromethyl)acetophenone. Modification of a 5 wt% Pt/Al2O3 catalyst by cinchonidine (CD) afforded the corresponding (S)-1-phenylethanol (69.5% ee). Working in strongly polar solvents, addition of trifluoroacetic acid in a weakly polar solvent, and replacing CD by its ether derivatives resulted in the inversion of enantioselectivity. Addition of CD or any of its derivatives always led to a lower reaction rate, contrary to the generally observed rate acceleration in the hydrogenation of α-functionalized activated ketones over the same catalyst system. Another fundamental difference to the hydrogenation of α-functionalized activated ketones is that both the quinuclidine N and the OH functions of CD influence the stereochemical outcome of the reaction, as clarified by using O- and N-substituted derivatives of CD. Ab initio calculations confirmed these remarkable mechanistic differences. Inversion of enantioselectivity in the presence of strongly polar and acidic solvents is attributed to special interactions with the OH function of CD, and to the formation of a CD–acid ion pair, respectively. A possible explanation for the moderate ee's in the hydrogenation of ring-substituted acetophenones is that a reaction pathway without involvement of the OH function of CD is also feasible. This competing pathway is even faster and provides low ee to the opposite enantiomer.
The comparison between experimental and calculated VCD spectra allowed the unequivocal assignment of the absolute configuration of heptahelicene C30H18 as P(+).
The adsorption of several ketones interesting for the enantioselective hydrogenation on cinchona-modified platinum has been modeled using relativistically corrected density functional theory. Two metal clusters, containing 19 and 31 Pt atoms, respectively, have been used to model a Pt(111) surface. The two adsorption modes η1 and η2 have been described, and their importance for the mechanism of hydrogenation has been pointed out. The effect of an ester group in α position and of α-fluorination of a ketone on its adsorption has been studied, and an explanation for the reactivity enhancement due to the ketone substitution has been proposed.
Epoxidation of cyclohex-2-en-1-ol and cyclooct-2-en-1-ol on titania–silica aerogel catalysts using t-butylhydroperoxide (TBHP) as oxidant was studied by in situ attenuated total reflection (ATR) Fourier transform infrared spectroscopy. Probing of the catalytic liquid–solid interface revealed different adsorption behaviors for the two allylic alcohols on the aerogel. Cyclohexenol was found to adsorb stronger and less reversible on the catalyst surface and Ti sites than cyclooctenol. The spectroscopic measurements under working conditions support the previously proposed hydroxy-assisted mechanism for the formation of cyclohexenol oxide and the silanol-assisted mechanism for cyclooctenol epoxidation. The evidence of the former is traced to the occurrence of a framework vibration upon adsorption of cyclohexenol, whereas the latter is supported by large negative bands of the silanol groups at 3700 and 980 cm−1 in the case of cyclooctenol epoxidation.
Identification of catalyst surface species during asymmetric platinum-catalyzed hydrogenation in a "supercritical" solvent
M.S. Schneider, A. Urakawa, J.-D. Grunwaldt, and A. Baiker ChemComm, 6 (2004), p744-745
DOI:10.1039/b315591a | unige:14722 | Abstract | Article HTML | Article PDF
The enantioselective hydrogenation of several isatine derivatives over cinchonidine modified Pt/Al2O3 was investigated. A maximum enantiomeric excess (e.e.) of 45% was found for (R)-5,7-dimethylisatin. The enantiomeric excess was limited by racemization catalyzed by the basic cinchonidine in solution, leading to low enantiomeric excess at high cinchonidine concentration. The modifier in solution also catalyzed the formation of the corresponding isatide. High cinchonidine concentration favored isatide formation, whereas low cinchonidine concentration and high hydrogen pressure favored alcohol formation. The isatide, formed from the isatin reactant and the alcohol, underwent disproportionation. Though both hydrogenation and isatide formation are fast reactions, isatide formation was considerably faster at least at the beginning of the reaction. Substitution of the isatin reactant had relatively little effect on enantiomeric excess but affected considerably the rate of racemization.
The behavior of ethyl pyruvate during adsorption on vapor deposited alumina-supported platinum films and on a commercial 5 wt % Pt/Al2O3 catalyst has been studied in the absence and presence of coadsorbed cinchonidine, which is usually applied as a chiral modifier in the platinum-catalyzed enantioselective hydrogenation of α-ketoesters. The in situ ATR−IR measurements, performed at room temperature using hydrogen-saturated CH2Cl2 as solvent, revealed that upon adsorption on the platinum some of the ethyl pyruvate decomposes leading to strongly adsorbed CO and other fragmentation products. The CO originating from decomposition of ethyl pyruvate reached approximately 14% of the amount of adsorbable CO on the free platinum surface and is proposed to be adsorbed preferentially on energetically favored sites such as edges and corners. The presence of cinchonidine (10-4 M) lead to a drastic decrease of the decomposition rate of ethyl pyruvate by a factor of about 60 under the conditions used. Competitive adsorption experiments of CO and cinchonidine in the presence of hydrogen indicated that cinchonidine can displace the adsorbed CO, confirming the strong anchoring of cinchonidine on the platinum surface, which is a prerequisite for its action as a chiral modifier. The findings of the adsorption studies provide a plausible explanation for the earlier made observation that the sequence of admission of α-ketoester, chiral modifier, and hydrogen affects the catalytic performance of platinum-catalyzed enantioselective hydrogenation. The decomposition is likely to occur also with other α-ketoesters and may have a bearing on the initial transient period, typically observed during hydrogenation of such compounds on cinchona-modified platinum catalysts.
Adsorption of cinchonidine on platinum: a DFT insight in the mechanism of enantioselective hydrogenation of activated ketones
A. Vargas, and A. Baiker Journal of Catalysis, 226 (1) (2004), p69-82 Keywords: Cinchonidine; Adsorption; DFT; Platinum; Enantioselective hydrogenation; DFT; Activated ketones; Mechanism
DOI:10.1016/j.jcat.2004.05.011 | unige:14736 | Article HTML | Article PDF
The adsorption of cinchonidine on platinum has been calculated with relativistically corrected density-functional theory, by first studying the interaction of the 1(S)-(4-quinolinyl)ethanol with a platinum cluster of 31 metal atoms, and by successive addition and separate optimization of the quinuclidine moiety. The conformations of the alkaloid on the surface were analyzed and their possible interactions with a surface chemisorbed methylpyruvate and acetophenone are discussed. A chiral space that is able to selectively accommodate surface enantiomers and to promote their rapid hydrogenation in a ligand-accelerated fashion has been determined. The role of the O-alkylation of the alkaloid in the modulation of enantioselectivity has been rationalized within the new interaction model.
FTIR and NMR spectroscopy and ab initio calculations were applied to understand the nature of enantioselection in the hydrogenation of the heteroaromatic ring in furan- and benzofurancarboxylic acids over cinchonidine-modified Pd. Most probably, cinchonidine adsorbs on Pd, via its quinoline moiety, approximately parallel to the surface, and the protonated quinuclidine N atom and the OH function of the alkaloid form a cyclic complex with the deprotonated acid dimer (2:1 acid:cinchonidine). The acid dimer adsorbs via the electron-rich furan ring and the carboxylate groups close to parallel to the Pd surface; the furan O atom points toward the OH function of cinchonidine. In this position, hydrogen uptake from the Pd surface results in the (S)-enantiomer as the major product. Another cyclic complex (1:1) involving cinchonidine and only one acid molecule is also feasible in solution, but this rigid structure is thermodynamically less favored, and it may be difficult to fulfill the geometric constraints imposed by adsorption on the metal surface.
A method to selectively probe the different adsorption of enantiomers at chiral solid−liquid interfaces is applied, which combines attenuated total reflection infrared spectroscopy and modulation spectroscopy. The spectral changes on the surface are followed while the absolute configuration of the adsorbate is changed periodically. Demodulated spectra are calculated by performing a subsequent digital phase-sensitive data analysis. The method is sensitive solely to the difference of the interaction of the two enantiomers with the chiral surface, and the small spectral changes are amplified by the phase-sensitive data analysis. Its potential is demonstrated by investigating an already well-studied system in liquid chromatography, namely, the enantiomer separation of N-3,5-dinitrobenzoyl-(R,S)-leucine (DNB-(R,S)-Leu) using tert-butylcarbamoyl quinine (tBuCQN) as the chiral selector immobilized on the surface of porous silica particles. The performed experiments and density functional theory calculations confirm an interaction model that was proposed earlier based on solution NMR and XRD in the solid state. It emerges that the ionic interaction is the strongest one, but the main reason for the potential for enantioseparation of the chiral stationary phase (CSP) is the distinct formation of a hydrogen bond of the (S)-enantiomer with the chiral selector. This H-bond is established between the amide N−H of DNB-(S)-Leu with the carbamate C=O of the CSP. The (R)-enantiomer instead shows no specific hydrogen bonds. Only the unspecific ionic bonding between the protonated quinine part of the tBuCQN and the carboxylate of the DNB-(R)-Leu (holds also for DNB-(S)-Leu) is observed.
In situ attenuated total reflection infrared spectroscopy in a flow-through cell combined with online UV−vis spectroscopy was used to investigate the oxidation of 2-propanol over Pd/Al2O3 catalyst. The state of the catalyst was driven fast between reduced and oxidized by admitting alternately dissolved hydrogen and oxygen, and the response of the catalytic solid−liquid interface was followed in time. Besides the oxidation product acetone and the water that forms, when hydrogen and oxygen are simultaneously adsorbed on the catalyst surface, an additional species was observed with a characteristic band at ~1065 cm-1. On the basis of the transient character of the adsorbate and density functional theory calculations, we assign this species to adsorbed 2-propoxide. Its observation indicates that the second dehydrogenation step is rate limiting in an oxidative dehydrogenation mechanism. The results furthermore show that adsorbed hydrogen and oxygen limit the dissociative adsorption of 2-propanol and that 2-propoxide can be hydrogenated back to the reactant in the presence of adsorbed hydrogen.
Modification of a metal surface by a strongly adsorbed chiral organic molecule has proven to be an interesting strategy for heterogeneous chiral catalysis. Platinum chirally modified by cinchona alkaloids, successfully applied for the enantioselective hydrogenation of α-ketoesters, is probably the most prominent catalyst based on this concept. Despite considerable research efforts toward understanding of this complex catalytic system, the proposed mechanistic models are still debated. Here we discuss how enantiodifferentiation can be induced on a catalytically active surface and validate the models proposed for the platinum−cinchona system in the light of the existing molecular knowledge.
Cumulated triple bonds: A new class of molecules, the isoelectronic series of NUIr, (depicted) has been postulated and theoretically studied. The bond between the actinide and the 5d-metal atom is very short and is shown to correspond to triple bonding. The N — U bond is also a triple bond.
The fragmentation behaviour of the ion MeP(O)OMe+ has been investigated using quantum mechanical calculations at the B3LYP and MP2 levels to support experiments made with an Ion Trap Mass Spectrometer. Two mechanisms for the loss of CH2O are found, one involving a 1,3-H migration to phosphorus and the other a 1,2-methyl migration to give P(OMe)2+ followed by a 1,3-H migration. In each case an ion-dipole complex is formed that rapidly dissociates to yield CH2O. The relative importance of each route has been previously determined experimentally via isotopic labelling experiments, and the theoretical results are found to be consistent with these experimental results. The mechanisms suggested in the earlier work involving a 1,4 H migration to O are shown to be energetically unfavourable.
A theoretical study of the lowest electronic states of azobenzene: the role of torsion coordinate in the cis-trans photoisomerization
L. Gagliardi, G. Orlandi, F. Bernardi, A. Cembran and M. Garavelli Theoretical Chemistry Accounts, 111 (2-6) (2004), p363-372
DOI:10.1007/s00214-003-0528-1 | unige:3319 | Article PDF
In the present paper we report the results of a multiconfigurational computational study on potential-energy curves of azobenzene along the NN twisting to clarify the role of this coordinate in the decay of the S2(ππ*) and S1(nπ*) states. We have found that there is a singlet state, S3 at the trans geometry, on the basis of the doubly excited configuration n2π*2, that has a deep minimum at about 90° of twisting, where it is the lowest excited singlet state. The existence of this state provides an explanation for the short lifetime of S2(ππ*) and for the wavelength-dependence of azobenzene photochemistry. We have characterized the S1(nπ*) state by calculating its vibrational frequencies, which are found to correspond to the recently observed transient Raman spectrum. We have also computed the potential-energy curve for the triplet T1(nπ*) at the density functional theory B3LYP level, which indicates that in this state the isomerization occurs along the twisting coordinate.
In this paper, we identify the most efficient decay and isomerization route of the S1, T1, and S0 states of azobenzene. By use of quantum chemical methods, we have searched for the transition states (TS) on the S1 potential energy surface and for the S0/S1 conical intersections (CIs) that are closer to the minimum energy path on the S1. We found only one TS, at 60° of CNNC torsion from the E isomer, which requires an activation energy of only 2 kcal/mol. The lowest energy CIs, lying also 2 kcal/mol above the S1 minimum, were found on the torsion pathway for CNNC angles in the range 95−90°. The lowest CI along the inversion path was found ca. 25 kcal/mol higher than the S1 minimum and was character1 state decay involves mainly the torsion route and that the inversion mechanism may play a role only if the molecule is excited with an excess energy of at least 25 kcal/mol with respect to the S1 minimum of the E isomer. We have calculated the spin−orbit couplings between S0 and T1 at several geometries along the CNNC torsion coordinate. These spin−orbit couplings were about 20−30 cm-1 for all the geometries considered. Since the potential energy curves of S0 and T1 cross in the region of twisted CNNC angle, these couplings are large enough to ensure that the T1 lifetime is very short (~10 ps) and that thermal isomerization can proceed via the nonadiabatic torsion route involving the S0−T1−S0 crossing with preexponential factor and activation energy in agreement with the values obtained from kinetic measures.
The Sm+O chemiionization reaction has been investigated theoretically using a method that allows for correlation and relativistic effects. Potential energy curves have been calculated for several electronic states of SmO and SmO+. Comparison with available spectroscopic and thermodynamic values for these species is reported and a mechanism for the chemiionization reaction Sm+O is proposed. The importance of spin–orbit coupling in the excited states of SmO, in allowing this chemiionization reaction to take place, has been revealed by these calculations. This paper shows the metal-plus-oxidant chemiionization reaction.
Quantum chemical calculations suggest that a series of molecules with the general formula MAu6 are stable, where M is a a group 6 atom, Cr, Mo, W, respectively. These species have a structure analogous to the corresponding MH6 compounds, while they differ from the MX6, where X is a halogen. The further reaction MAu6 + 3Au2→MAu12 is strongly exothermic.
A new method is presented, which makes it possible to partition molecular properties like multipole moments and polarizabilities, into atomic and interatomic contributions. The method requires a subdivision of the atomic basis set into occupied and virtual basis functions for each atom in the molecular system. The localization procedure is organized into a series of orthogonalizations of the original basis set, which will have as a final result a localized orthonormal basis set. The new localization procedure is demonstrated to be stable with various basis sets, and to provide physically meaningful localized properties. Transferability of the methyl properties for the alkane series and of the carbon and hydrogen properties for the benzene, naphtalene, and anthracene series is demonstrated.
Quantum chemical calculations predict the existence of new molecular species with general formula MH12, where M is a group 6 atom. The previous MHn species had n values up to 9. The new systems with n = 12 would be a new record for metal hydrides.
Contribution to the analysis of the predissociated rovibronic structure of the symmetric isotopomers 16O3 and 18O3 of ozone near 10,400 cm-1: 3A2(A20) <- X1A1(O00) and 3B2 <- X1A1
G. Wannous, A.J. Bouvier, Z. El Helou, , S. Churassy, R. Bacis, A. Campargue, G. Weirauch and R.H. Judge Spectrochimica Acta, Part A: Molecular and Biomolecular Spectroscopy, 60 (4) (2004), p889-898 Keywords: Ozone; 16O3; 18O3; Electronic spectroscopy; Wulf transition; Intra cavity laser absorption spectroscopy (ICLAS)
DOI:10.1016/S1386-1425(03)00316-0 | unige:3324 | Abstract | Article HTML | Article PDF
The absorption spectrum of ozone was recorded at low temperatures (down to −135 °C) by high resolution Fourier transform spectrometry and intra cavity laser absorption spectroscopy (ICLAS) near 10,400 cm−1. A preliminary analysis of the rotational structure of the absorption spectra of 16O3 and 18O3 shows that this spectral region corresponds to a superposition of two different electronic transitions, one with a very broad rotational structure, showing for the first time the asymmetric stretching frequency mode ν3 of the electronic state 3A2, the other formed by a completely diffuse band, probably the 201 band of a new transition due to the triplet electronic state 3B2. Predissociation effects induce large broadening of the rotational lines for the transition centered at 10,473 cm−1 identified as the 302 band of the 3A2 ← X1A1 electronic transition. The rotational structure cannot be analyzed directly but instead the band contour method was used to confirm the symmetry of the transition and to estimate the spectroscopic constants for the 16O isotopomer. The origin of the band is at 10,473±3 cm−1 and the value of the 16O3(3A2) antisymmetric stretching frequency mode is equal to 460±2 cm−1. We believe that the diffuse band is due to the 3B2 state and is located at about 10,363±3 cm−1 for 16O3 and 10,354±3 cm−1 for 18O3. The isotopic rules confirm the different results obtained for 18O3 and 16O3.
Photophysical properties of three-dimensional transition metal tris-oxalate network structures
, M.E. Von Arx, V.S. Langford, S. Kairouani, U. Oetliker and A. Pillonnet
in "Topics in Current Chemistry, Transition Metal and Rare Earth Compounds. Excited States, Transitions, and Interactions, Vol III"
(ed. H. Yersin), Springer, Berlin,
241 (2004) Keywords: oxalate networks ; [Cr(ox)3]3– ; [Cr(bpy)3]3+ ; 2E state ; resonant energy transfer ; phonon-assisted energy transfer ; Förster transfer ; Exchange interaction
DOI:10.1007/b96860 | unige:3941
Excitation energy transfer processes play an important role in many areas of physics, chemistry and biology. The three-dimensional oxalate networks of composition [MIII(bpy)3][MIMIII(ox)3]ClO4 (bpy=2,2-bipyridine, ox=oxalate, MI=alkali ion) allow for a variety of combinations of different transition metal ions. The combination with chromium(III) on both the tris-bipyridine as well as the tris-oxalate site constitutes a model system in which it is possible to differentiate unambiguously between energy transfer from [Cr(ox)3]3– to [Cr(bpy)3]3+ due to dipole-dipole interaction on the one hand and exchange interaction on the other hand. Furthermore it is possible to just as unambiguously differentiate between the common temperature dependent phonon-assisted energy migration within the 2E state of [Cr(ox)3]3–, and a unique resonant process.
Crystalline, Mixed-Valence Manganese Analogue of Prussian Blue: Magnetic, Spectroscopic, X-ray and Neutron Diffraction Studies
P. Franz, C. Ambrus, , D. Chernyshov, M. Hostettler, J. Hauser, L. Keller, K. Krämer, H. Stoeckli-Evans, P. Pattison, H.-B. Bürgi and S. Decurtins Journal of the American Chemical Society, 126 (50) (2004), p16472-16477
DOI:10.1021/ja0465451 | unige:3247 | Abstract | Article HTML | Article PDF
The compound of stoichiometry Mn(II)3[Mn(III)(CN)6]2·zH2O (z = 12−16) (1) forms air-stable, transparent red crystals. Low-temperature single crystal optical spectroscopy and single crystal X-ray diffraction provide compelling evidence for N-bonded high-spin manganese(II), and C-bonded low-spin manganese(III) ions arranged in a disordered, face-centered cubic lattice analogous to that of Prussian Blue. X-ray and neutron diffraction show structured diffuse scattering indicative of partially correlated (rather than random) substitutions of [Mn(III)(CN)6] ions by (H2O)6 clusters. Magnetic susceptibility measurements and elastic neutron scattering experiments indicate a ferrimagnetic structure below the critical temperature Tc = 35.5 K.
Ultrafast spectroscopy on bimolecular photoinduced electron transfer reactions
A. Morandeira, A. Fürstenberg, S. Pagès, and The Spectrum, 17 (4) (2004), p14-19 unige:3248 | Article PDF
The lessons learned from p-octiphenyl β-barrel pores are applied to the rational design of synthetic multifunctional pore 1 that is unstable but inert, two characteristics proposed to be ideal for practical applications. Nonlinear dependence on monomer concentration provided direct evidence that pore 1 is tetrameric (n = 4.0), unstable, and “invisible,” i.e., incompatible with structural studies by conventional methods. The long lifetime of high-conductance single pores in planar bilayers demonstrated that rigid-rod β-barrel 1 is inert and large (d ≈ 12 Å). Multifunctionality of rigid-rod β-barrel 1 was confirmed by adaptable blockage of pore host 1 with representative guests in planar (8-hydroxy-1,3,6-pyrenetrisulfonate, KD = 190 μM, n = 4.9) and spherical bilayers (poly-l-glutamate, KD ≤ 105 nM, n = 1.0; adenosine triphosphate, KD = 240 μM, n = 2.0) and saturation kinetics for the esterolysis of a representative substrate (8-acetoxy-1,3,6-pyrenetrisulfonate, KM = 0.6 μM). The thermodynamic instability of rigid-rod β-barrel 1 provided unprecedented access to experimental evidence for supramolecular catalysis (n = 3.7). Comparison of the obtained kcat = 0.03 min-1 with the kcat ≈ 0.18 min-1 for stable analogues gave a global KD ≈ 39 μM3 for supramolecular catalyst 1 with a monomer/barrel ratio ≈ 20 under experimental conditions. The demonstrated “invisibility” of supramolecular multifunctionality identified molecular modeling as an attractive method to secure otherwise elusive insights into structure. The first molecular mechanics modeling (MacroModel, MMFF94) of multifunctional rigid-rod β-barrel pore hosts 1 with internal 1,3,6-pyrenetrisulfonate guests is reported.
Mechanism of Exciplex Decay: The Quantum Yields and the Rate Constants of Radical Ion Formation from Exciplexes with Partial Charge Transfer
D.N. Dogadkin, E.V. Dolotova, I.V. Soboleva, M.G. Kuzmin, V.F. Plyusnin, I.P. Pozdnyakov, V.P. Grivin, , P. Brodard and O. Nicolet High Energy Chemistry, 38 (6) (2004), p392-400
DOI:10.1023/B:HIEC.0000048237.12132.26 | unige:3249 | Abstract | Article PDF
The dynamics of exciplex and radical ion formation was studied in donor–acceptor systems with G*et > –0.1 eV. It was shown that the quenching of excited singlet states of aromatic molecules by electron donors in polar solvents led to the formation of radical ions via exciplex dissociation resulting to complete charge separation. Intersystem crossing and internal conversion into the ground state (back electron transfer) compete with this process. The quantum yields and the rate constants of the radical ion formation were measured.
Combination of gas chromatography-mass spectrometry and mass spectral deconvolution for structural elucidation of an unusual C29-steroid detected in a complex sedimentary matrix
Y. Finck, N. Aydin, C. Pellaton, G. Gorin and F.O. Gülaçar Journal of Chromatography A, 1049 (1-2) (2004), p227-231 Keywords: deconvolution; AMDIS; 4 14-Dimethycholestane; Monterey
DOI:10.1016/j.chroma.2004.08.004 | unige:3613 | Abstract | Article HTML | Article PDF
A complex sedimentary sample from the Monterey Formation (CA, USA) has been submitted to GC–MS analysis followed by mass spectral deconvolution using Automated Mass Spectral Deconvolution and Identification System (AMDIS). Adjusting the parameters of the software allowed for the extraction of the spectrum of an unusual steroidal hydrocarbon coeluting with the major compound of the chromatogram. Following a careful interpretation of the “extracted” mass spectrum, the structure of the unknown has been postulated to be the 4,14-dimethylcholestane (DMC). Possible origins of this rare steroid are briefly discussed. Thus, application of AMDIS appears to be particularly suitable for the GC–MS analysis of natural complex mixtures characterized by a high number of analytes present in low amounts.
Capillary electrokinetic separation of polycyclic aromatic hydrocarbons using cetylpyridinium bromide
G. Kavran Belin, F.B. Erim and F.O. Gülaçar Polycyclic Aromatic Compounds, 24 (4-5) (2004), p343-352 Keywords: capillary electrophoresis; cationic surfactant; cetylpyridinium bromide; polycyclic aromatic hydrocarbons
DOI:10.1080/10406630490468504 | unige:3250 | Abstract | Article HTML | Article PDF
Polycyclic aromatic hydrocarbons (PAHs) including isomeric pairs were separated in capillary electrokinetic chromatography using a cationic surfactant cetylpyridinium bromide (CPBr) as additive. With addition of 2 mM CPBr into the running electrolyte, dynamic coating occurs in the capillary and EOF is reversed. Changes of electroosmotic and electrophoretic mobilities with increasing CPBr concentration were investigated. Under optimum separation conditions, running electrolyte contains 50% MeCN, 20 mM acetate, and 40 mM CPBr at pH = 4.0. Using high concentration of organic solvent, aggregation of surfactants into micelles is prevented. Significant retentions indicate solvophobic, n- and π-electron interactions between CPBr monomers and PAHs.
An Ia mechanism was assigned for water exchange on the hexaaquaions Rh(OH2)63+ and Ir(OH2)63+ on the basis of negative ΔV‡ experimental values (−4.2 and −5.7 cm3 mol-1, respectively). The use of ΔV‡ as a mechanistic criterion was open to debate primarily because ΔV‡ could be affected by extension or compression of the nonparticipating ligand bond lengths on going to the transition state of an exchange process. In this paper, volume and energy profiles for two distinct water exchange mechanisms (D and Ia) have been computed using quantum chemical calculations which include hydration effects. The activation energy for Ir(OH2)63+ is 32.2 kJ mol-1 in favor of the Ia mechanism (127.9 kJ mol-1), as opposed to a D pathway; the value for the Ia mechanism being close to ΔH‡ and ΔG‡ experimental values (130.5 kJ mol-1 and 129.9 kJ mol-1 at 298 K, respectively). Volumes of activation, computed using Connolly surfaces and for the Ia pathway (ΔV‡calc = −3.9 and −3.5 cm3 mol-1, respectively, for Rh3+ and Ir3+), are in agreement with the experimental values. Further, it is demonstrated for both mechanisms that the contribution to the volume of activation due to the changes in bond lengths between Ir(III) and the spectator water molecules is negligible: −1.8 for the D, and −0.9 cm3 mol-1 for Ia mechanism. This finding clarifies the debate about the interpretation of ΔV‡ and unequivocally confirms the occurrence of an Ia mechanism with retention of configuration and a small a character for both Rh(III) and Ir(III) hexaaquaions.
Tuning facial-meridional isomerisation in monometallic nine-coordinate lanthanide complexes with unsymmetrical tridentate ligands
T. Le Borgne, P. Altmann, N. André, J.-C.G. Bünzli, G. Bernardinelli, , and C. Piguet Dalton Transactions, (5) (2004), p723-733
DOI:10.1039/b316035a | unige:3251 | Abstract | Article HTML | Article PDF
The unsymmetrical tridentate benzimidazole–pyridine–carboxamide units in ligands L1–L4 react with trivalent lanthanides, LnIII, to give the nine-co-ordinate triple-helical complexes [Ln(Li)3]3+ (i=1–4) existing as mixtures of C3-symmetrical facial and C1-symmetrical meridional isomers. Although the β13 formation constants are 3–4 orders of magnitude smaller for these complexes than those found for the D3-symmetrical analogues [Ln(Li)3]3+ (i=5–6) with symmetrical ligands, their formation at the millimolar scale is quantitative and the emission quantum yield of [Eu(L2)3]3+ is significantly larger. The fac-[Ln(Li)3]3+↔mer-[Ln(Li)3]3+ (i =1–4) isomerisation process in acetonitrile is slow enough for Ln=LuIII to be quantified by 1H NMR below room temperature. The separation of enthalpic and entropic contributions shows that the distribution of the facial and meridional isomers can be tuned by the judicious peripheral substitution of the ligands affecting the interstrand interactions. Molecular mechanics (MM) calculations suggest that one supplementary interstrand -stacking interaction stabilises the meridional isomers, while the facial isomers benefit from more favourable electrostatic contributions. As a result of the mixture of facial and meridional isomers in solution, we were unable to obtain single crystals of 13 complexes, but the X-ray crystal structures of their nine-co-ordinate precursors [Eu(L1)2(CF3SO3)2(H2O)](CF3SO3)(C3H5N)2(H2O) ( 6, C45H54EuF9N10O13S3, monoclinic, P21/c, Z=4) and [Eu(L4)2(CF3SO3)2(H2O)](CF3SO3)(C4H4O)1.5 ( 7, C51H66EuF9N8O15.5S3, triclinic, P, Z=2) provide crucial structural information on the binding mode of the unsymmetrical tridentate ligands.
Unusual regio-and enantioselective [1,2]-Stevens rearrangement of a spirobi[dibenzazepinium] cation
L. Vial, M.-H. Gonçalves, , , G. Bernardinelli and J. Lacour Synlett, (9) (2004), p1565-1568 Keywords: ammonium, rearrangements, regioselectivity, stereoselectivity, ylides
DOI:10.1055/s-2004-829069 | unige:3256 | Abstract | Article HTML | Article PDF
Highly symmetric spirobi[dibenzazepinium] cation 3 reacts with P4-t-Bu to form exclusively a ring-expanded tertiary amine; this unusual reactivity can be traced back to the geometry of the ylide.
The electron transfer quenching dynamics of excited perylene and cyanoperylene in various donating solvents has been investigated by using ultrafast fluorescence up-conversion and multiplex transient grating. The strongly nonexponential fluorescence decays have been analyzed by using the orientational model described in the first article of this series (J. Phys. Chem.A2003, 107, 5375). It appears that the solvent dependence of the quenching dynamics is strongly connected to the number of surrounding donor molecules enabling ultrafast electron transfer. This number depends mainly on the driving force for electron transfer, on steric interactions, and on the occurrence of dipole−dipole interactions with the acceptor. The quenching product is an exciplex with a strong charge-transfer character. The complicated wavelength dependence of the fluorescence dynamics in the exciplex region, as well as the spectral dynamics observed in the transient grating data, is attributed to dipolar solvation, which leads to an increase of the charge-transfer character of the exciplex. The strong donor dependence of the exciplex lifetime is very similar to that reported earlier for the charge recombination time of geminate ion pairs in acetonitrile, and can be rationalized in terms of different intramolecular reorganization energies and electronic coupling constants.
Effect of Conformational Changes on a One-Electron Reduction Process: Evidence of a One-Electron PP Bond Formation in a Bis(phosphinine)
S. Choua, C. Dutan, L. Cataldo, , , N. Mézailles, A. Moores, L. Ricard and P. Le Floch Chemistry - A European Journal, 10 (16) (2004), p4080-4090 Keywords: aromaticity; density functional calculations; electron transfer; EPR spectroscopy; fluxionality; P ligands
DOI:10.1002/chem.200400073 | unige:3252 | Abstract | Article HTML | Article PDF
EPR spectra show that one-electron reduction of bis(3-phenyl-6,6-(trimethylsilyl)phosphinine-2-yl)dimethylsilane (1) on an alkali mirror leads to a radical anion that is localized on a single phosphinine ring, whereas the radical anion formed from the same reaction in the presence of cryptand or from an electron transfer with sodium naphthalenide is delocalized on the two phosphinine rings. Density functional theory (DFT) calculations show that in the last species the unpaired electron is mainly confined in a loose P — P bond (3.479 Å), which results from the overlap of two phosphorus p orbitals. In contrast, as attested by X-ray spectroscopy, the P — P distance in neutral 1 is large (5.8 Å). As shown by crystal structure analysis, addition of a second electron leads to the formation of a classical P — P single bond (P — P 2.389 Å). Spectral modifications induced by the presence of cryptand or by a change in the reaction temperature are consistent with the formation of a tight ion pair that stabilizes the radical structure localized on a single phosphinine ring. It is suggested that the structure of this pair hinders internal rotation around the C — Si bonds and prevents 1 from adopting a conformation that shortens the intramolecular P — P distance. The ability of the phosphinine radical anion to reversibly form weak P — P bonds with neutral phosphinines in the absence of steric hindrance is confirmed by EPR spectra obtained for 2,6-bis(trimethylsilyl)-3-phenylphosphinine (2). Moreover, as shown by NMR spectroscopy, in this system, which contains only one phosphinine ring, further reduction leads to an intermolecular reaction with the formation of a classical P — P bond.
The packing preferences of dimers formed by nitrogen-containing planar polycyclic aromatic hydrocarbons ((C30H15N)2 and (C36H15N)2) were studied by means of theoretical calculations. Potential energy curves corresponding to various relative motions of the monomers (vertical displacement, rotating, slipping, and combinations of them) were derived. It was found that the monomers in such π-stacked dimers are rather strongly held together (the interaction energy is about −9 kcal/mol) in an off-centered arrangement. It emerges as a general picture that the aligned structures are less stable than the ones where the nitrogen atoms, as the centers of the considered monomers, are not on top of each other but offset by 1.8−2.7 Å. Displacing the centers further results in a rapid reduction of the interaction energy. Within these relatively large relative motions (up to about 3 Å) of the monomers, however, no significant loss of stability of the dimers is noted. In the case of C30H15N, changing the orientation of the enantiotopic faces in the dimer formation leads to two nonequivalent minimum energy structures of similar energies but notably different geometries. The most stable structure of both dimers studied resembles that of two adjacent layers of graphite. We conclude, therefore, that the studied molecules could be considered as good building block candidates for the fabrication of columnar organic conductors.
Ligand field splitting energies of lanthanides Ln3+ (Ln = from Ce to Yb) in octahedral environment are calculated using the Hohenberg–Kohn theorems based orbital-free embedding formalism. The lanthanide cation is described at orbital level whereas its environment is represented by means of an additional term in the Kohn–Sham-like one-electron equations expressed as an explicit functional of two electron densities: that of the cation and that of the ligands. The calculated splitting energies, which are in good agreement with the ones derived from experiment, are attributed to two main factors: (i) polarization of the electron density of the ligands, and; (ii) ion–ligand Pauli repulsion.
Hydrogen-Bonding-Induced Shifts of the Excitation Energies in Nucleic Acid Bases: An Interplay between Electrostatic and Electron Density Overlap Effects.
The theoretically calculated dimerization-induced shifts of the lowest excitation energies in two model systems, adenine−thymine and guanine−cytosine base pairs, are analyzed. The applied formalism is based on first principles and allows one to study the influence of the microscopic environment of a given molecule on its ground- [Wesolowski, T. A.; Warshel, A. J. Phys. Chem.1993, 97, 8050] and excited-state [Casida, M. E.; Wesolowski, T. A. Int. J. Quantum Chem.2004, 96, 577] properties. The assessment of the relative importance of such effects as (a) Coulomb interactions, (b) orbital interactions, (c) electronic polarization of the environment, and (d) electron density overlap effects is straightforward in this formalism. In the applied formalism, electron density overlap effects can be further decomposed into the exchange−correlation component which provides a small attractive contribution and the repulsive kinetic energy-dependent component. It is shown that the shifts can be attributed to the electrostatic interactions and the repulsive overlap-dependent term in the embedding potential. The electronic polarization of the environment plays a significant role (up to 30% of the total shift) only in transitions involving the orbitals localized on hydrogen bond donor groups. For all analyzed shifts, the contribution of the intermolecular orbital interactions is negligible. The analysis of this work provides strong evidence supporting the use of the widely applied embedding-molecule strategy in computational studies of chromophores in a condensed phase even in such cases where only one end of the hydrogen bond is included in the quantum mechanical part.
A model of nonequilibrium charge recombination from an excited adiabatic state of a donor-acceptor complex induced by the nonadiabatic interaction operator is considered. The decay of the excited state population prepared by a short laser pulse is shown to be highly nonexponential. The influence of the excitation pulse carrier frequency on the ultrafast charge recombination dynamics of excited donor-acceptor complexes is explored. The charge recombination rate constant is found to decrease with increasing excitation frequency. The variation of the excitation pulse carrier frequency within the charge transfer absorption band of the complex can alter the effective charge recombination rate by up to a factor 2. The magnitude of this spectral effect decreases strongly with increasing electronic coupling.
Ligand-field theoretical considerations
in "Topics in Current Chemistry, Spincrossover in Transition Metal Compounds, Vol I"
(eds P. Gütlich, H. A. Goodwin), Springer, Berlin,
233 (2004), p49-58 Keywords: spin crossover ; ligand field theory ; optical properties ; vibronic structure ; configurational coordinate
DOI:10.1007/b40394-9 | unige:3942
The phenomenon of the thermal spin transition, as observed for octahedral transition metal complexes having a d 4 to d 7 electronic configuration, can be fully rationalised on the basis of ligand field theory. In order to arrive at a self-consistent description of the vibronic structure of spin crossover compounds, it is essential to take into account the fact that the population of anti-bonding orbitals in the high-spin state results in a substantially larger metal-ligand bond length than for the low-spin state. Whereas the electron-electron repulsion is not affected to any great extent by such a bond length difference, the ligand field strength for iron(II) spin crossover compounds can be estimated to be almost twice as large in the low-spin state as compared to the one for the high-spin state. In fact, the dependence of the ligand field strength on the metal-ligand distance may be considered the quantum mechanical driving force for the spin crossover phenomenon.
Light-induced spin-crossover and the high-spin -> low-spin relaxation
in "Topics in Current Chemistry, Spincrossover in Transition Metal Compounds, Vol II"
(eds P. Gütlich, H. A. Goodwin), Springer, Berlin,
234 (2004), p155-198 Keywords: thermal and light-induced spin crossover ; high-spin->ow-spin relaxation ; Intersystem crossing ; external pressure ; chemical pressure ; cooperative effects ; Iron(II) complexes
DOI:10.1007/b95416 | unige:3943
The discovery of a light-induced spin transition at cryogenic temperatures in a series of iron(II) spin-crossover compounds in 1984 has had an enormous impact on spin-crossover research. Apart from being an interesting photophysical phenomenon in its own right, it provided the means of studying the dynamics of the intersystem crossing process between the high-spin and the low-spin state in a series of compounds and over a large temperature range. It could thus be firmly established that intersystem crossing in spin-crossover compounds is a tunnelling process, with a limiting low-temperature lifetime below 50 K and a thermally activated region above 100 K. This review begins with an elucidation of the mechanism of the light-induced spin transition, followed by an in depth discussion of the chemical and physical factors, including cooperative effects, governing the lifetimes of the light-induced metastable states.
Comparison of density functionals for energy and structural differences between the high- [5T2g: (t2g)4(eg)2] and low- [1A1g: (t2g)6(eg)0] spin states of the hexaquoferrous cation [Fe(H2O)6]2+
A. Fouqueau, S. Mer, M.E. Casida, , , T. Mineva and F. Neese Journal of Chemical Physics, 120 (20) (2004), p9473-9486