Publications of the Department of Organic Chemistry

58. 

Nitrogen- and sulfur-based Stevens and related rearrangements.

Bach, R.; Harthong, S.; Lacour, J.

Accepted for publication in Comprehensive Organic Synthesis, 2nd ed.; Molander, G.; Knochel, P. (Eds.); Elsevier.

57. 

A toolbox of HSQC experiments for small molecules at high 13C-enrichment. Artifact-free, fully 13C-homodecoupled and JCC-encoding pulse sequences.

Foroozandeh, M.; Giraudeau, P.; Jeannerat, D.

Magn. Reson. Chem., in press.

56. 

Complementary Catalytic Strategies to Access α-Chiral Aldehydes.

Mazet, C.

CHIMIA 2013, 67, 658-662.

open archive unige:30036 full text [restricted access]

55. 

Enantioselective 1,6-Conjugate Addition of Dialkylzinc Reagents to Acyclic Dienones Catalyzed by Cu-DiPPAM Complex-Extension to Asymmetric Sequential 1,6/1,4-Conjugate Addition.

Magrez-Chiquet, M.; Morin, M. S. T.; Wencel-Delord, J.; Drissi Amraoui, S.; Baslé, O.; Alexakis, A.; Crévisy, C.; Mauduit, M.

Chem. Eur. J. 2013, 19, 13663-13667.

open archive unige:30104 full text [restricted access]

C—C coupling: DiPPAM 1 and BINAP 2 ligands led to divergent behaviors in the asymmetric conjugate addition (ACA) of dialkylzinc reagents to linear aryldienones, which were applied to the development of a highly selective sequential asymmetric 1,6/1,4-ACA process (see scheme).

54. 

Increasingly Twisted Push-Pull Oligothiophenes and Their Planarization in Confined Space.

Alonso Doval, D.; Matile, S.

Org. Biomol. Chem., in press.

A series of systematically deplanarized push–pull oligothiophenes is designed and synthesized to determine the perfect twist for maximal spectroscopic response to their planarization within lipid bilayer membranes. Weak deplanarization naturally gives weak shifts, but strong deplanarization also gives weak shifts because planarization becomes impossible. Intermediate deplanarization turns out to be ideal. The shifts found in response to chromophore planarization are not as dramatic as with lobsters during cooking but sufficient to discriminate solid-ordered and liquid-disordered membranes with the naked eye.

53. 

One-Pot Multi-Component Synthesis and Solid State Structures of Functionally Rich Polyether Macrocycles.

Vishe, M.; Hrdina, R.; Guénée, L.; Besnard, C.; Lacour, J.

Adv. Synth. Catal., in press.

Densely functionalized polyether macrocycles can be prepared in one pot in yields up to 60% by Rhodium(II)-catalyzed decomposition of methyl diazoacetate in the presence of a variety of substituted or unsaturated 5 and 6 membered ring cyclic ethers. A comprehensive analysis of the solid state conformations of the macrocyclic geometries is detailed as well as novel mechanistic insights about the multi-component condensation reaction.

52. 

Picture Perfect: DNA-Templated Photoaffinity Labeling.

Barluenga, S.; Winssinger, N.

ChemBioChem, in press.

Just so far apart and no further: Small molecules target ID by DNA tagging. Nucleic acid hybridization has been used to pair a photo-crosslinking group with a small molecule of interest. Following photoactivation, the protein(s) interacting with the small molecule are covalently linked to a nucleic acid tag.

51. 

Construction of Enantioenriched Cyclic Compounds by Asymmetric Allylic Alkylation and Ring-Closing Metathesis.

Giacomina, F.; Alexakis, A.

Eur. J. Org. Chem., in press.

A new approach to highly enantioenriched cyclic compounds (up to 98 % ee) has been developed by using ω-ethylenic allylic substrates in a one-pot asymmetric allylic alkylation and ring-closing metathesis sequence. The starting compounds are synthetic equivalents of cyclic allylic substrates. The method is exemplified with both Cu and Ir catalysts, and chiral phosphoramidite ligands.

50. 

Practical Synthesis of SimplePhos Ligands: Further Development of Alkyl-Substituted Phosphanamines.

Müller, D.; Guénée, L.; Alexakis, A.

Eur. J. Org. Chem. 2013, 6335-6343.

open archive unige:29943 full text [restricted access]

Herein we disclose a rapid and easy synthetic procedure to access aryl- and alkyl-substituted phosphanamines (SimplePhos ligands). During the synthesis of a library of diverse aryl-substituted phosphanamine ligands we also found that alkyl-substituted phosphanamines can be synthesized and handled easily. This was unexpected as a previous report described them as highly air-sensitive compounds. Subsequently, we created a library of alkyl-substituted phosphanamines and found some to be highly efficient ligands in copper-catalyzed reactions such as the Cu-catalyzed asymmetric conjugate addition and propargylic alkylation reactions. Moreover, our efforts towards the synthesis of SimplePhos ligands led to the development of an easy and practical synthesis of diaryl(chloro)phosphanes, which is also presented in this paper.

49. 

Catalysis with Anion-π Interactions.

Zhao, Y.; Domoto, Y.; Orentas, E.; Beuchat, C.; Emery, D.; Mareda, J.; Sakai, N.; Matile, S.

Angew. Chem. Int. Ed. 2013, 52, 9940-9943.

open archive unige:29617 full text [restricted access]

The conclusion is inevitable:  Increasing stabilization of an anionic transition state with increasing π-acidity of the catalyst is observed; thus, anion–π interactions can contribute to catalysis.

48. 

Copper(II) chloride mediated (aza)oxindole synthesis by oxidative coupling of Csp2–H and Csp3–H centers: Substrate scope and DFT study.

Dey, C.; Larionov, E.; Kündig, E. P.

Org. Biomol. Chem. 2013, 11, 6734-6743.

open archive unige:29897 full text [restricted access]

A CuCl2 mediated direct intramolecular oxidative coupling of Csp2−H and Csp3−H centers gives access to 3,3-disubstituted oxindoles containing aromatic, heteroaromatic and alkyl substituents as well as heteroatom at the quaternary center in good to excellent yields. The reaction is carried out in the presence of NaOtBu and CuCl2 in DMF at 110 °C. The key step of this reaction is the formation of amidyl radical by one electron oxidation of amide enolate followed by intramolecular radical cyclization reaction (homolytic aromatic substitution reaction). A detailed DFT study shows that the cyclization of amidyl radical is the rate-limiting step in the oxindole synthesis, whereas the second single electron transfer (SET) becomes the rate-determining step in the aza-oxindole formation. Computational data are in agreement with experimentally observed relative reactivity and regioselectivity.

47. 

Asymmetric Bromine–Lithium Exchange: Application toward the Synthesis of Natural Product.

Graff, J.; Debande, T.; Praz, J.; Guénée, L.; Alexakis, A.

Org. Lett. 2013, 15, 4270-4273.

open archive unige:29559 full text [restricted access]

Asymmetric bromine–lithium exchange has been successfully employed to synthesize bicoumarin chiral building blocks of (+)-isokotanin A and (−)-kotanin in good yields and with an excellent level of enantioselectivity. This is the first reported example of formal syntheses, using this direct methodology, leading to the single (M)-atropoisomer of (+)-isokotanin A and (−)-kotanin building blocks, without any resolution step.

46. 

α-Arylation, α-Arylative Esterification, or Acylation: A Stoichiometry-Dependent Trichotomy in the Pd-Catalyzed Cross-Coupling between Aldehydes and Aryl Bromides.

Nareddy, P.; Mazet, C.

Chem. Asian J., in press.

The selective α-arylation and α-arylative esterification of linear and branched aldehydes is reported for a variety of bromoarenes. The acylation of aryl bromides can be achieved with linear aldehydes (see scheme). All these transformations were performed with a single [(N-heterocyclic carbene)Pd] catalyst through adjustment of the stoichiometry of the reagents and the appropriate base.

45. 

Toward Oriented Surface Architectures with Three Co-Axial Charge-Transporting Pathways.

Sforazzini, G.; Orentas, E.; Bolag, A.; Sakai, N.; Matile, S.

J. Am. Chem. Soc. 2013, 135, 12082-12090.

open archive unige:29560 full text [restricted access]

We report a synthetic method to build oriented architectures with three coaxial π-stacks directly on solid surfaces. The approach operates with orthogonal dynamic bonds, disulfides and hydrazones, self-organizing surface-initiated polymerization (SOSIP), and templated stack-exchange (TSE). Compatibility with naphthalenediimides, perylenediimides, squaraines, fullerenes, oligothiophenes, and triphenylamine is confirmed. Compared to photosystems composed of two coaxial channels, the installation of a third channel increases photocurrent generation up to 10 times. Limitations concern giant stack exchangers that fail to enter SOSIP architectures (e.g., phthalocyanines surrounded by three fullerenes), and planar triads that can give folded or interdigitated charge-transfer architectures rather than three coaxial channels. The reported triple-channel surface architectures are as sophisticated as it gets today, the directionality of their construction promises general access to multichannel architectures with multicomponent gradients in each individual channel. The reported approach will allow us to systematically unravel the ultrafast photophysics of molecular dyads and triads in surface architectures, and might become useful to develop conceptually innovative optoelectronic devices.

44. 

Synthesis of 3,3-Disubstituted Oxindoles by Palladium-Catalyzed Asymmetric Intramolecular α-Arylation of Amides: Reaction Development and Mechanistic Studies.

Katayev, D.; Jia, Y.-X.; Sharma, A. K.; Banerjee, D.; Besnard, C.; Sunoj, R. B.; Kündig, E. P.

Chem. Eur. J. 2013, 19, 11916-11927.

open archive unige:29561 full text [restricted access]

Palladium complexes incorporating chiral N-heterocyclic carbene (NHC) ligands catalyze the asymmetric intramolecular α-arylation of amides producing 3,3-disubstituted oxindoles. Comprehensive DFT studies have been performed to gain insight into the mechanism of this transformation. Oxidative addition is shown to be rate-determining and reductive elimination to be enantioselectivity-determining. The synthesis of seven new NHC ligands is detailed and their performance is compared. One of them, L8, containing a tBu and a 1-naphthyl group at the stereogenic centre, proved superior and was very efficient in the asymmetric synthesis of fifteen new spiro-oxindoles and three azaspiro-oxindoles often in high yields (up to 99 %) and enantioselectivities (up to 97 % ee; ee=enantiomeric excess). Three palladacycle intermediates resulting from the oxidative addition of [Pd(NHC)] into the aryl halide bond were isolated and structurally characterized (X-ray). Using these intermediates as catalysts showed alkene additives to play an important role in increasing turnover number and frequency.

43. 

Comparison of Lipoic and Asparagusic Acid for Surface-Initiated Disulfide-Exchange Polymerization.

Carmine, A.; Domoto, Y.; Sakai, N.; Matile, S.

Chem. Eur. J. 2013, 19, 11558-11563.

open archive unige:29562 full text [restricted access]

Bring it on: Organic chemistry on surfaces and in solution is not the same; this study offers a perfect example, with small changes (from 27 to 35°; see graphic) and big consequences. Strained cyclic disulfides from asparagusic, but not lipoic acid, are ideal for growing functional architectures directly on surfaces; for the substrate-initiated synthesis of cell-penetrating poly(disulfide)s in solution, exactly the contrary is true.

42. 

Efficient synthesis of imino-methano Tröger bases by nitrene insertions into C-N bonds.

Pujari, S. A.; Guénée, L.; Lacour, J.

Org. Lett. 2013, 15, 3930-3933.

open archive unige:29040 full text [restricted access]

A direct nitrene insertion into C-N bonds is observed upon treatment of methano-Tröger bases with arylsulfonyl iminophenyliodinanes under copper and dirhodium catalysis. Novel cyclic imino-methano Tröger bases are obtained (55-88%). Enantiopure products (ee ≥ 99%) can be obtained with tailored substrates

41. 

Enantioselective Organocatalytic Fluorination-Induced Wagner-Meerwein Rearrangement.

Romanov-Michailidis, F.; Guénée, L.; Alexakis, A.

Angew. Chem. Int. Ed. 2013, 52, 9266-9270.

open archive unige:29563 full text [restricted access]

Cracked under strain: Strained allylic cyclobutanols and cyclopropanols readily undergo a ring expansion described by the title rearrangement. This reaction is promoted by catalytic amounts of 1 and displays high tolerance with respect to the substrate scope. The corresponding β-fluoro spiroketone products are isolated in high yields and with excellent stereoselectivities. EDG=electron-donating group, EWG=electron-withdrawing group.

40. 

Enantio- and Regioselective Conjugate Addition of Organometallic Reagents to Linear Polyconjugated Nitroolefins.

Tissot, M.; Alexakis, A.

Chem. Eur. J. 2013, 19, 11352-11363.

open archive unige:29564 full text [restricted access]

The copper-catalysed conjugate addition of trialkylaluminium and dialkylzinc reagents to polyconjugated nitroolefins (nitrodiene and nitroenyne derivatives) is reported. A reversed Josiphos ligand L7 allows for the selective 1,4- or 1,6-addition with high enantioselectivities.

39. 

Structure and dynamic of three indole alkaloids from Campylospermum genus (Ochnaceae).

Bayiha Ba Njock, G.; Bartholomeusz, T. A.; Ngono Bikobo, D.; Foroozandeh, M.; Shivapurkar, R.; Christen, P.; Pegnyemb, D. E.; Jeannerat, D.

Helv. Chim. Acta 2013, 96, 1298-1304.

open archive unige:28929 full text [restricted access]

38. 

Solid phase synthesis of glycopeptides using Shoda's activation of unprotected carbohydrates.

Novoa, A.; Barluenga, S.; Serba, C.; Winssinger, N.

Chem. Commun. 2013, 49, 7608-7610.

open archive unige:29565 full text [restricted access]

An expedient and simple protocol to access S-linked glycopeptides by Fmoc SPPS using unprotected carbohydrates is reported. The utility of the method was demonstrated with the solid phase synthesis of a MUC1 fragment (20 mer) containing two glycosylation sites that were substituted with S-linked glycans.

37. 

Regioselective Cyclometalation of Planar Chiral Pyridine and Oxazoline Derivatives: peri- versus ortho-C–H Functionalization.

Mercier, A.; Wagschal, S.; Guénée, L.; Besnard, C.; Kündig, E. P.

Organometallics 2013, 32, 3932-3942.

open archive unige:28959 full text [restricted access]

The cyclopalladation of highly enantioenriched cyclopentadienyl(indenyl)ruthenium complexes featuring pyridine or oxazoline functionalities as directing groups is detailed. Two competitive metalation sites inherent to the fused ring system were selectively activated after appropriate tuning of the reaction conditions, enabling the access to both six (peri)- and five-membered (ortho) membered chelates. A periortho isomerization was identified in the pyridine-based system, unveiling a kinetic preference for the peri-position and thermodynamic control for the ortho-cyclopalladation. In marked contrast, oxazoline derivatives incorporating a stereogenic center at C4 proved reluctant to form ortho-isomers and were exclusively converted into the corresponding peri-palladacyles at low temperatures.

36. 

Ring-Expansion Reactions of Binaphthyl Azepines and Ferrocenophanes through Metal-Catalyzed [1,2]-Stevens Rearrangements.

Harthong, S.; Bach, R.; Besnard, C.; Guénée, L.; Lacour, J.

Synthesis 2013, 45, 2070-2078.

open archive unige:28961 full text [restricted access]

35. 

Dynamic Amphiphile Libraries to Screen for the “Fragrant” Delivery of siRNA into HeLa Cells and Human Primary Fibroblasts.

Gehin, C.; Montenegro, J.; Bang, E.-K.; Cajaraville, A.; Takayama, S.; Hirose, H.; Futaki, S.; Matile, S.; Riezman, H.

J. Am. Chem. Soc. 2013, 135, 9295-9298.

open archive unige:28923 full text [restricted access]

Dynamic amphiphiles are amphiphiles with dynamic covalent bridges between their hydrophilic heads and their hydrophobic tails. Their usefulness to activate ion transporters, for odorant release, and for differential sensing of odorants and perfumes, has been demonstrated recently. Here, we report that the same “fragrant” dynamic amphiphiles are ideal to screen for new siRNA transfection agents. The advantages of this approach include rapid access to fairly large libraries of complex structures, and possible transformation en route to assist uptake and minimize toxicity. We report single-component systems that exceed the best commercially available multicomponent cocktails with regard to both efficiency and velocity of EGFP knockdown in HeLa cells. In human primary fibroblasts, siRNA-mediated enzyme knockdown nearly doubled from >30% for Lipofectamine to >60% for our best hit. The identified structures were predictable neither from literature nor from results in fluorogenic vesicles and thus support the importance of conceptually innovative screening approaches.

34. 

Reactions Templated by Nucleic Acids: More Ways to Translate Oligonucleotide-Based Instructions into Emerging Function.

Gorska, K.; Winssinger, N.

Angew. Chem. Int. Ed. 2013, 52, 6820-6843.

open archive unige:28704 full text [restricted access]

The programmability of oligonucleotide recognition offers an attractive platform to direct the assembly of reactive partners that can engage in chemical reactions. Recently, significant progress has been made in both the breadth of chemical transformations and in the functional output of the reaction. Herein we summarize these recent progresses and illustrate their applications to translate oligonucleotide instructions into functional materials and novel architectures (conductive polymers, nanopatterns, novel oligonucleotide junctions); into fluorescent or bioactive molecule using cellular RNA; to interrogate secondary structures or oligonucelic acids; or a synthetic oligomer.

33. 

Organocatalytic Asymmetric Annulation of 1,3-Bis(alkoxycarbonyl)buta-1,3-dienes and Aldehydes.

Pezzati, B.; Chellat, M. F.; Murphy, J. J.; Besnard, C.; Reginato, G.; Stephens, J. C.; Alexakis, A.

Org. Lett. 2013, 15, 2950-2953.

open archive unige:28702 full text [restricted access]

Asymmetric organocatalytic annulation of E/Z isomeric mixtures of bis(alkyl carboxylate)buta-1,3-dienes and aldehydes has been realized via enamine catalysis. In the presence of α,α-diphenyl-2-pyrrolidinemethanol trimethylsilyl ether, excellent stereo- and enantioselectivities were achieved for a broad spectrum of substrates.

32. 

Towards elucidation of the drug release mechanism from compressed hydrophilic matrices made of cellulose ethers. III. Critical use of thermodynamic parameters of activation for modeling the water penetration and drug release processes.

Ferrero, C.; Massuelle, D.; Jeannerat, D.; Doelker, E.

J. Controlled Release 2013, 170, 175-182.

open archive unige:29594 full text [restricted access]

The two main purposes of this work were: (i) to critically consider the use of thermodynamic parameters of activation for elucidating the drug release mechanism from hydroxypropyl methylcellulose (HPMC) matrices, and (ii) to examine the effect of neutral (pH 6) and acidic (pH 2) media on the release mechanism. For this, caffeine was chosen as model drug and various processes were investigated for the effect of temperature and pH: caffeine diffusion in solution and HPMC gels, and drug release from and water penetration into the HPMC tablets. Generally, the kinetics of the processes was not significantly affected by pH. As for the temperature dependence, the activation energy (Ea) values calculated from caffeine diffusivities were in the range of Fickian transport (20–40 kJ mol−1). Regarding caffeine release from HPMC matrices, fitting the profiles using the Korsmeyer–Peppas model would indicate anomalous transport. However, the low apparent Ea values obtained were not compatible with a swelling-controlled mechanism and can be assigned to the dimensional change of the system during drug release. Unexpectedly, negative apparent Ea values were calculated for the water uptake process, which can be ascribed to the exothermic dissolution of water into the initially dry HPMC, the expansion of the matrix and the polymer dissolution. Taking these contributions into account, the true Ea would fall into the range valid for Fickian diffusion. Consequently, a relaxation-controlled release mechanism can be dismissed. The apparent anomalous drug release from HPMC matrices results from a coupled Fickian diffusion–erosion mechanism, both at pH 6 and 2.

31. 

Enthalpy-Entropy Compensation Combined with Cohesive Free-Energy Densities for Tuning the Melting Temperatures of Cyanobiphenyl Derivatives.

Dutronc, T.; Terazzi, E.; Guénée, L.; Buchwalder, K.-L.; Spoerri, A.; Emery, D.; Mareda, J.; Floquet, S.; Piguet, C.

Chem. Eur. J. 2013, 19, 8447-8456.

open archive unige:28610 full text [restricted access]

This work illustrates how minor structural perturbations produced by methylation of 4′-(dodecyloxy)-4-cyanobiphenyl leads to enthalpy–entropy compensation for their melting processes, a trend which can be analyzed within the frame of a simple intermolecular cohesive model. The transformation of the melting thermodynamic parameters collected at variable temperatures into cohesive free-energy densities expressed at a common reference temperature results in a novel linear correlation, from which melting temperatures can be simply predicted from molecular volumes.

30. 

Following the Lead from Nature: Divergent Pathways in Natural Product Synthesis and Diversity-Oriented Synthesis.

Serba, C.; Winssinger, N.

Eur. J. Org. Chem. 2013, 4195-4214.

open archive unige:28922 full text [restricted access]

This microreview discusses recent efforts in chemical synthesis to design divergent pathways either to access diverse natural products from a common intermediate or to produce diverse libraries of compounds reminiscent of natural products. These efforts are generally based on the development and use of powerful complexity-generating reactions and cascade reactions. A panel of eighteen examples is used to illustrate different strategies.

29. 

Quantification of Nitrate-π Interactions and Selective Transport of Nitrate Using Calix[4]pyrroles with Two Aromatic Walls.

Adriaenssens, L. V.; Estarellas, C.; Vargas Jentzsch, A.; Martínez Belmonte, M.; Matile, S.; Ballester, P.

J. Am. Chem. Soc. 2013, 135, 8324-8330.

open archive unige:28405 full text [restricted access]

Herein we disclose the results of our investigations regarding the interactions between the biologically relevant nitrate oxoanion and several “two-wall” aryl-extended calix[4]pyrroles. There exists a clear relationship between the electronic nature of the aromatic walls of the calix[4]pyrroles and the stability of the nitrate⊂calix[4]pyrrole complex. This suggests that NO3-π interactions have an important electrostatic component. We provide energetic estimates for the interaction of nitrate with several phenyl derivatives. Additionally, we report solid-state evidence for a preferred binding geometry of the nitrate anion included in the calix[4]pyrroles. Finally, the “two-wall” aryl-extended calix[4]pyrroles show excellent activity in ion transport through lipid-based lamellar membranes. Notably the best anion transporters are highly selective for transport of nitrate over other anions.

28. 

Nucleic Acid-programmed Assemblies: Translating Instruction into Function in Chemical Biology.

Winssinger, N.

CHIMIA 2013, 67, 340-348.

open archive unige:28912 full text [restricted access]

27. 

Detection of miRNA in Live Cells by Using Templated RuII-Catalyzed Unmasking of a Fluorophore.

Sadhu, K. K.; Winssinger, N.

Chem. Eur. J. 2013, 19, 8182-8189.

open archive unige:28609 full text [restricted access]

Reactions templated by cellular nucleic acids are attractive for nucleic acid sensing or responsive systems. Herein we report the use of a photocatalyzed reductive cleavage of an immolative linker to unmask a rhodamine fluorophore, and its application to miRNA imaging. The reaction was found to proceed with a very high turnover (>4000) and provided reliable detection down to 5 pm of template by using γ-serine-modified peptide nucleic acid (PNA) probes. The reaction was used for the selective detection of miR-21 in BT474 cells and miR-31 in HeLa cells following irradiation for 30 min. The probes were introduced by using reversible permeation with streptolysin-O (SLO) or a transfection technique.

26. 

Synthetic Ion Channels.

Sakai, N.; Matile, S.

Langmuir 2013, 29, 9031-9040.

open archive unige:28962 full text [restricted access]

The objective of this historical review is to recall the development of the field of synthetic ion channels over the past three decades. The most inspiring and influential breakthroughs with regard to structure and function are brought together to give the general reader an easily accessible understanding of the field. Pioneering work in the 1980s is followed by the golden age in the 1990s with structures emphasizing crown ethers, calixarenes, and peptide mimetics. Following the emergence of questions concerning specific functions such as ion selectivity, voltage gating, ligand gating and blockage, and with π-stacks, metal–organic scaffolds, and DNA origami, a new wave of innovative structures has emerged. The perspectives outline promising directions and major challenges waiting to be addressed.

25. 

Direct Trapping of Sterically Encumbered Aluminum Enolates.

Bleschke, C.; Tissot, M.; Müller, D.; Alexakis, A.

Org. Lett. 2013, 15, 2152-2155.

open archive unige:27733 full text [restricted access]

The formation of chiral and sterically congested cyclohexanone derivatives has been achieved through a multistep sequence with one single purification step. (n-Butoxymethyl)-diethylamine was identified as a highly efficient reagent for the direct trapping of aluminum enolates. The Lewis acidic character of aluminum suffices to activate the α-aminoether to form in situ an electrophilic iminium species. In return the aluminum enolate is rendered more nucleophilic by coordination of the butoxy group and formation of an aluminate.

24. 

Highly Diastereo- and Enantioselective Organocatalytic Domino Michael/Aldol Reaction of Acyclic 3-Halogeno-1,2-Diones to α,β-Unsaturated Aldehydes.

Lefranc, A.; Guénée, L.; Alexakis, A.

Org. Lett. 2013, 15, 2172-2175.

open archive unige:27720 full text [restricted access]

The first organocatalytic diastereo- and enantioselective domino Michael/aldol reaction of 3-halogeno-1,2-diones to α,β-unsaturated aldehydes has been achieved. This transformation tolerates a large variety of electronically different substituents on both reactive partners and allows the synthesis of challenging cyclopentanone derivatives with four contiguous stereogenic centers in excellent diastereoselectivities (>20:1 dr) as well as good yields (69–97%), and enantioselectivities (up to 94% ee).

23. 

Access to Congested Quaternary Centers by Pd-catalyzed Intermolecular γ-arylation of Unactivated α,β-unsaturated Aldehydes.

Franzoni, I.; Guénée, L.; Mazet, C.

Chem. Sci. 2013, 4, 2619-2624.

open archive unige:27741 full text [restricted access]

The palladium-catalyzed intermolecular γ-arylation of γ-branched α,β-unsaturated aldehydes has been developed. The reaction allows congested quaternary centers to be forged on a remote position of the carbonyl group affording a variety of products in high yield and with consistently high stereoselectivity using very low catalyst loadings. The synthetic utility of the products has been highlighted by a series of derivatizations and the potential of the method to extend to remote ε-functionalization has been demonstrated.

22. 

Chiral Selectivity in the Binding of [4]Helicene Derivatives to Double-Stranded DNA.

Kel, O.; Fürstenberg, A.; Mehanna, N.; Nicolas, C.; Laleu, B.; Hammarson, M.; Albinsson, B.; Lacour, J.; Vauthey, E.

Chem. Eur. J. 2013, 19, 7173-7180.

open archive unige:27926 full text [restricted access]

The interaction of a series of chiral cationic [4]helicene derivatives, which differ by their substituents, with double-stranded DNA has been investigated by using a combination of spectroscopic techniques, including time-resolved fluorescence, fluorescence anisotropy, and linear dichroism. Addition of DNA to helicene solutions results to a hypochromic shift of the visible absorption bands, an increase of fluorescence quantum yield and lifetime, a slowing down of fluorescence anisotropy decay, and a linear dichroism in flow-oriented DNA, which unambiguously points to the binding of these dyes to DNA. Both helicene monomers and dimeric aggregates, which form at higher concentration, bind to DNA, the former most probably upon intercalation and the latter upon groove binding. The binding constant depends substantially on the dye substituents and is, in all cases, larger with the M than the P enantiomer, by factors ranging from 1.2 to 2.3, depending on the dye.

21. 

Synthetic Ion Transporters that Work with Anion-π Interactions, Halogen Bonds and Anion-Macrodipole Interactions.

Vargas Jentzsch, A.; Hennig, A.; Mareda, J.; Matile, S.

Acc. Chem. Res., in press.

The transport of ions and molecules across lipid bilayer membranes connects cells and cellular compartments with their environment. This biological process is central to a host of functions including signal transduction in neurons and the olfactory and gustatory sensing systems, the translocation of biosynthetic intermediates and products, and the uptake of nutrients, drugs, and probes. Biological transport systems are highly regulated and selectively respond to a broad range of physical and chemical stimulation. A large percentage of today’s drugs and many antimicrobial or antifungal agents take advantage of these systems. Other biological transport systems are highly toxic, such as the anthrax toxin or melittin from bee venom.

20. 

Isomerization of Terminal Epoxides by a [Pd-H] Catalyst: A Combined Experimental and Theoretical Mechanistic Study.

Vyas, D. J.; Larionov, E.; Besnard, C.; Guénée, L.; Mazet, C.

J. Am. Chem. Soc. 2013, 135, 6177-6183.

open archive unige:27608 full text [restricted access]

An unusual palladium hydride complex has been shown to be a competent catalyst in the isomerization of a variety of terminal epoxides. The reaction displayed broad scope and synthetic utility. Experimental and theoretical evidences are provided for an unprecedented hydride mechanism characterized by two distinct enantio-determining steps. These results hold promise for the development of an enantioselective variant of the reaction.

19. 

Transmembrane Halogen-Bonding Cascades.

Vargas Jentzsch, A.; Matile, S.

J. Am. Chem. Soc. 2013, 135, 5302-5303.

open archive unige:27472 full text [restricted access]

Halogen bonds have recently been introduced as ideal to transport anions across lipid bilayer membranes. However, activities obtained with small transporters were not impressive, and cyclic arrays of strong halogen-bond donors above a calix[4]arene scaffold gave even weaker activities. Here, we report that their linear alignment for anion hopping along transmembrane rigid-rod scaffolds gives excellent activities with an unprecedented cooperativity coefficient m = 3.37.

18. 

Self-Organizing Surface-Initiated Polymerization of Multicomponent Photosystems:  Templated Stack Exchange with Fullerenes.

Bolag, A.; Hayashi, H.; Charbonnaz, P.; Sakai, N.; Matile, S.

ChemistryOpen 2013, 2, 55-57.

open archive unige:27593 full text [free access]

17. 

Creation of Highly Congested Quaternary Centers via Cu-catalyzed Conjugate Addition of Alkenyl Alanates to β-Substituted Cyclic Enones.

Müller, D.; Alexakis, A.

Org. Lett. 2013, 15, 1594-1597.

open archive unige:27319 full text [restricted access]

Easily prepared alkenylalanates proved to be excellent nucleophiles for the creation of highly congested quaternary centers via copper-catalyzed conjugate addition. In addition, functionalized cis-decaline systems can now be prepared in a simple two-step sequence involving Cu-catalyzed conjugate addition with functionalized alkenylalanates.

16. 

Selective affinity-based probe for oncogenic kinases suitable for live cell imaging.

Zambaldo, C.; Sadhu, K. K.; Karthikeyan, G.; Barluenga, S.; Daguer, J.-P.; Winssinger, N.

Chem. Sci. 2013, 4, 2088-2092.

open archive unige:27370 full text [restricted access]

Cell permeable probes to image the presence and localization of kinases are important in studying their function and as diagnostic tools. Despite the central role of kinases as therapeutic targets, there are remarkably few probes available. Herein we report the discovery of a probe to image two therapeutically relevant kinases: EGFR and ERBB2. The probe was identified from a library based on a scaffold derived from the resorcyclic acid lactones that form a covalent adduct by reacting specifically with an unconserved cysteine in the nucleotide-binding site of the kinases. We demonstrated the utility of the newly discovered probe by imaging of EGFR localization and ERBB2 inhibition in live cells.

15. 

Scope and Mechanism of Asymmetric C(sp3)-H/C(Ar)-X Coupling Reactions: Computational and Experimental Study.

Larionov, E.; Nakanishi, M.; Katayev, D.; Besnard, C.; Kündig, E. P.

Chem. Sci. 2013, 4, 1995-2005.

open archive unige:27315 full text [restricted access]

Advances in the efficient palladium–NHC catalysed synthesis of highly enantioenriched 2,3-trans-fused and 2-alkyl indolines via asymmetric C(sp3)–H activation of an unactivated methylene/methyl group are reported. Very high asymmetric inductions (up to 99% ee) were achieved at reaction temperatures ranging from 120 to 160 °C. Factors influencing the efficiency of the reaction (halide, pseudohalide, N-protecting group) were investigated. The reaction pathway and enantioselection were probed by detailed density functional theory (DFT) calculations (M06-L functional). The combined theoretical and experimental study shows that the Pd–NHC catalysed C(sp3)–H arylation proceeds via a concerted metalation–deprotonation (CMD) mechanism. The CMD step is shown by DFT calculations and kinetic isotope effect measurements to be selectivity-determining. A good agreement between experimental enantioselectivities and calculated differences amongst diastereomeric activation barriers is observed.

14. 

DNA as a Platform to Program Assemblies with Emerging Functions in Chemical Biology.

Sadhu, K. K.; Röthlingshöfer, M.; Winssinger, N.

Isr. J. Chem. 2013, 53, 75-86.

open archive unige:26538 full text [restricted access]

13. 

Double-Channel Photosystems with Antiparallel Redox Gradients:  Templated Stack Exchange with Porphyrins and Phthalocyanines.

Sforazzini, G.; Turdean, R.; Sakai, N.; Matile, S.

Chem. Sci. 2013, 4, 1847-1851.

open archive unige:26731 full text [restricted access]

We report the synthesis of multicomponent surface architectures composed of phthalocyanines (Pc), porphyrins (TPP) and naphthalenediimides (NDI). Naphthalenediimide stacks are grown first by self-organizing surface initiated disulfide-exchange polymerization (SOSIP). An oriented redox gradient driving electrons toward the surface is applied by growing electron-richer NDI stacks on top of poorer ones. Lateral stacks of porphyrins and phthalocyanines are then added by templated stack exchange (TSE). A three-component gradient is constructed to drive the holes away from the solid surface. Antiparallel gradients are found to minimize charge recombination during photocurrent generation. Templates used for stack exchange also serve as hole barriers, whereas their size has surprisingly little importance. These results demonstrate the compatibility of SOSIP-TSE technology with porphyrins and phthalocyanines, confirm the importance of oriented antiparallel gradients to minimize charge recombination, and show that electronics rather than the size matter to template stack exchange.

12. 

3,4-Ethylenedioxythiophene in Planarizable Push-Pull Oligothiophenes.

Dal Molin, M.; Matile, S.

Org. Biomol. Chem. 2013, 11, 1952-1957.

open archive unige:26697 full text [restricted access]

We report design, synthesis and evaluation of push–pull quaterthiophene amphiphiles containing one 3,4-ethylenedioxythiophene (EDOT) and a single strong twist in the scaffold. Planarizable push–pull oligothiophene amphiphiles have been introduced recently as conceptually innovative fluorescent probes that sense the fluidity and the potential of lipid bilayer membranes. The “hyper-twisted” EDOT probes respond to planarization and restricted rotational freedom with a red shift and changes in vibrational finestructure in the excitation spectrum, respectively. In solution, comparably weak solvatochromism and significant thermochromism are found. Planarization and restricted rotational freedom afford exquisite sensitivity toward nature and fluidity of lipid bilayer membranes, including ratiometric detection of phase transitions. The sensing of membrane potentials is weakened by these unique properties but remains possible.

11. 

Comment on the manuscript of Muñoz M.A. et al. published in Phytochemistry Letters (2012) 5: 450-454 entitled "Absolute configuration and stereochemical analysis of 3α,6β-dibenzoyloxytropane".

Humam, M.; Shoul, T.; Jeannerat, D.; Muñoz, O.; Christen, P.

Phytochem. Lett. 2013, 6, 90.

open archive unige:29619 full text [restricted access]

10. 

Substrate-Initiated Synthesis of Cell-Penetrating Poly(disulfide)s.

Bang, E.-K.; Gasparini, G.; Molinard, G.; Roux, A.; Sakai, N.; Matile, S.

J. Am. Chem. Soc. 2013, 135, 2088-2091.

open archive unige:26439 full text [restricted access]

Lessons from surface-initiated polymerization are applied to grow cell-penetrating poly(disulfide)s directly on substrates of free choice. Reductive depolymerization after cellular uptake should then release the native substrates and minimize toxicity. In the presence of thiolated substrates, propagators containing a strained disulfide from asparagusic or, preferably, lipoic acid and a guanidinium cation polymerize into poly(disulfide)s in less than 5 min at room temperature at pH 7. Substrate-initiated polymerization of cationic poly(disulfide)s and their depolymerization with dithiothreitol causes the appearance and disappearance of transport activity in fluorogenic vesicles. The same process is further characterized by gel-permeation chromatography and fluorescence resonance energy transfer.

9. 

Determination of Labile Chiral Supramolecular Ion Pairs by Chromatographic NMR Spectroscopy.

Reddy, G. N. M.; Ballesteros-Garrido, R.; Lacour, J.; Caldarelli, S.

Angew. Chem. Int. Ed. 2013, 52, 3255-3258.

open archive unige:26733 full text [restricted access]

Silica-enhanced NMR diffusometry can distinguish the signals of diastereoisomeric mixtures of supramolecular ion pairs. The experiment has a shorter timescale than Liquid Chromatography, thus allowing an easier characterization of species that are even configurationally labile on the minutes timescale.

8. 

Copper-Catalyzed Asymmetric Conjugate Addition of Alkenyl- and Alkylalanes to α,β-Unsaturated Lactams.

Cottet, P.; Müller, D.; Alexakis, A.

Org. Lett. 2013, 15, 828-831.

open archive unige:26461 full text [restricted access]

Alkenyl and alkyl groups have been successfully introduced to six-membered α,β-unsaturated lactams via a copper-catalyzed asymmetric 1,4-addition of the corresponding alanes. Moderate to good yields and good to excellent enantioselectivities are achieved by using a combination of the very cheap copper(II) naphthenate and a readily available phosphine amine ligand. The creation of an all-carbon quaternary stereogenic center, via Michael addition to a trisubstituted conjugated lactam, is also disclosed for the first time.

7. 

Self-Organizing Surface-Initiated Polymerization, Templated Self-Sorting and Templated Stack Exchange:  Synthetic Methods to Build Complex Systems.

Lista, M.; Orentas, E.; Areephong, J.; Charbonnaz, P.; Wilson, A.; Zhao, Y.; Bolag, A.; Sforazzini, G.; Turdean, R.; Hayashi, H.; Domoto, Y.; Sobczuk, A.; Sakai, N.; Matile, S.

Org. Biomol. Chem. 2013, 11, 1754-1765.

open archive unige:26501 full text [restricted access]

In nature, spectacular function is achieved by highly sophisticated supramolecular architectures. Little is known what we would obtain if we could create complexity with similar precision, because the synthetic methods to do so are not available. This account summarizes recent approaches conceived to improve on this situation. With self-organizing surface-initiated polymerization (SOSIP), charge-transporting stacks can be grown directly on solid substrates with molecular-level precision. The extension to templated self-sorting (SOSIP-TSS) offers a supramolecular approach to multicomponent architectures. A solid theoretical framework for the transcription of information by templated self-sorting has been introduced, intrinsic templation efficiencies up to 97% have been achieved, and the existence of self-repair has been shown. The extension to templated stack exchange (SOSIP-TSE) offers the complementary covalent approach. Compatibility of this robust method with the creation of double-channel architectures with antiparallel two-component gradients has been demonstrated.

6. 

Synthesis, Structural Analysis and Catalytic Properties of Tetrakis (Binaphthyl or Octahydrobinaphthyl Phosphate) Dirhodium(II,II) Complexes.

Hrdina, R.; Guénée, L.; Moraleda, D.; Lacour, J.

Organometallics 2013, 32, 473-479.

open archive unige:26052 full text [restricted access]

The X-ray structural analyses of homoleptic Rh(II) complexes made of enantiopure (R)-1,1’-binaphthyl and (R)-(5,5’,6,6’,7,7’,8,8’-octahydro)-binaphthyl phosphate ligands are for the first time presented. The possibility to introduce halogen atoms at the 3,3’-positions is also reported. The isolated dirhodium complexes were further tested as catalysts (1 mol %) in enantioselective cyclopropanations and Si-H insertion reactions.

5. 

Modular Synthesis, Orthogonal Post-Functionalization, Absorption and Chiroptical Properties of Cationic [6]Helicenes.

Torricelli, F.; Bosson, J.; Besnard, C.; Chekini, M.; Bürgi, T.; Lacour, J.

Angew. Chem. Int. Ed. 2013, 52, 1796-1800.

open archive unige:26214 full text [restricted access]

Novel cationic diaza, azaoxo and dioxo [6]helicenes are readily prepared and functionalized selectively by orthogonal aromatic electrophilic and vicarious nucleophilic substitutions; reduction, cross-coupling or condensation reactions bringing further diversity. Absorption properties up to the near Infra-Red window are tuned thanks to these late-stage transformations. The diaza helicene can be furthermore resolved into single enantiomeric salts of known configuration.

4. 

Stereoselective Self-Sorting on Surfaces:  Transcription of Chiral Information.

Orentas, E.; Sakai, N.; Matile, S.

Chirality 2013, 25, 107-113.

open archive unige:26129 full text [restricted access]

3. 

Copper-Free Asymmetric Allylic Alkylation with a Grignard Reagent: Design of the Ligand and Mechanistic Studies.

Grassi, D.; Dolka, C.; Jackowski, O.; Alexakis, A.

Chem. Eur. J. 2013, 19, 1466-1475.

open archive unige:25800 full text [restricted access]

The Cu-free asymmetric allylic alkylation, catalysed by NHC, with Grignard reagents is reported on allyl bromide derivatives with good results. The enantioselectivity was quite homogeneous (around 85 % ee) on large and various substrates, regardless of the nature of the Grignard reagent. The formation of stereogenic quaternary centres was highly regioselective for both aliphatic and aromatic derivatives with good enantiomeric excess (up to 92 % ee). The methodology developed was found to be complementary with the Cu-catalysed version. Several new NHCs were tested with improved efficiency. In addition, mechanistic studies, using NMR spectroscopy, led to the discovery of the catalytically active species.

2. 

Self-Assembled Antibody Multimers through Peptide Nucleic Acid Conjugation.

Kazane, S. A.; Axup, J. Y.; Kim, C. H.; Ciobanu, M.; Wold, E. D.; Barluenga, S.; Hutchins, B. A.; Schultz, P. G.; Winssinger, N.; Smider, V. V.

J. Am. Chem. Soc. 2013, 135, 340-346.

open archive unige:25547 full text [restricted access]

With the recent clinical success of bispecific antibodies, a strategy to rapidly synthesize and evaluate bispecific or higher order multispecific molecules could facilitate the discovery of new therapeutic agents. Here we show that unnatural amino acids (UAAs) with orthogonal chemical reactivity can be used to generate site-specific antibody-oligonucleotide conjugates. These constructs can then be self-assembled into multimeric complexes with defined composition, valency and geometry. Using this approach, we generated potent bispecific antibodies that recruit cytotoxic T lymphocytes to Her2 and CD20 positive cancer cells, as well as multimeric antibody fragments with enhanced activity. This strategy should accelerate the synthesis and in vitro characterization of antibody constructs with unique specificities and molecular architectures.

1. 

Sensing Applications of Synthetic Transport Systems.

Takeuchi, T.; Matile, S.

Chem. Commun. 2013, 49, 19-29.

open archive unige:24311 full text [restricted access]

This feature article offers a comprehensive account of a decade of research devoted to the combination of the grand sensing principles with synthetic transport systems that act in lipid bilayers. Differential sensing, that is pattern generation and pattern recognition, is exemplified with an artificial nose. The aptamer version of immunosensing is realized with sticky-end polymers of DNA double helices for both signal generation and signal transduction. Biosensing, that is the use of enzymes for signal generation, is exemplified first with an artificial tongue and then expanded to analytes such as cholesterol, phytate or polyphenols. Enjoyable also for the general reader, we hope that this account will inspire supramolecular organic as well as analytical, physical and biological chemists.