Publications

all

2017

  1. Lovric, S., S. Goncalves, … H. Riezman, C. Antignac, J.D. Saba and F. Hildebrant (2017) Mutations in sphingosine-1-phosphate lyase cause nephrosis with ichthyosis and adrenal insufficiency. J. Clin. Invest. Feb 6. pii: 89626. doi: 10.1172/JCI89626. [Epub ahead of print]
  2. Hannich, J.T., D. Mellal, S. Feng, A. Zumbuehl and H. Riezman (2017) Structure and conserved function of iso-branched sphingoid bases from the nematode Caenorhabditis elegans. Chemical Science, 8; 3676-3686. DOI: 10.1039/C6SC04831E.
  3. Capasso, S., L. Sticco, R. Rizzo, M. Pirozzi, D. Russo, N.A. Dathan, F. Campelo, J. van Galen, M. Holtta-Vuori, G. Turacchio, A. Hausser, V. Malhotra, I. Riezman, H. Riezman, E. Ikonen, C. Luberto, S. Parashuraman, A. Luini, G. D’Angelo (2017) Sphingolipid metabolic flow controls phosphoinositide turnover at the trans Golgi network. EMBO J., publ online, May 10. DOI: 10.15252/embj201696048
  4. Harayama, T. and H. Riezman (2017) Detection of Genome-Edited Mutant Clones by a Simple Competition-Based PCR Method. PLoS One, Jun 6;12(6):e0179165. doi: 10.1371/journal.pone.0179165.
  5. Dorsaz, S., T. Snaka, Q. Favre-Godal, P. Maudens, N. Boulens, P. Furrer, S.N. Ebrahimi, M. Hamburger, E. Allémann, K. Gindro, E.F. Queiroz, H. Riezman, J.L. Wolfender, and D. Sanglard (2017) Identification and mode of action of a plant nature product targeting human fungal pathogens. Antimicrob. Agents Chemother. Jul 3. pii:AAC.00829-17. doi: 10.1128/AAC.00829-17
  6. Guerreiro, J.F., N.P. Mira1†, A.X.S. Santos, H. Riezman and I. Sá-Correia (2017) Membrane Phosphoproteomics of Yeast Early Response to Acetic Acid: Role of Hrk1 Kinase and Lipid Biosynthetic Pathways, in Particular Sphingolipids. Front. Microbiol., 12 July, 2017, doi.org/10.3389/fmicb.2017.01302
  7. Dewhurst-Maridor, G., D. Abegg, F.P.A. David, J. Rougemont, C.C. Scott, A. Adibekian and H. Riezman (2017) The SAGA complex, together with transcription factors and the endocytic protein Rvs167p, coordinate the reprofiling of gene expression in response to changes in sterol composition in Saccharomyces cerevisiae. Mol. Biol. Cell, 2 August, 2017, doi: 10.1091/mbc.E17-03-0169
  8. Shinde, A.B., R.K. Baboota, S. Denis, U. Loizides-Mangold, A. Peeters, A.R. Malheiro, M. Espeel, H. Riezman, S. Vinckier, F. Vaz, P. Brites, S. Ferdinandusse, P. Van Veldoven and M. Baes (2017) Mitochondrial disruption in peroxisome deficient cells is hepatocyte selective but is not mediated by common hepatic peroxisomal metabolites. Mitochondrion, doi: 10.1016j.mito.2017.08.013
  9. Loizides-Mangold, U., L. Perrin, B. Vandereycken, J. A. Betts, J.P. Walhin, I. Templeman, S. Chanon, B.D. Weger, C. Durand, M. Robert, J. Paz, M. Moniatte, L.G. Karagounis, J.D. Johnston, F. Gachon, E. Lefai, H. Riezman and C. Dibner (2017) Lipidomics reveals diurnal lipid oscillations in human skeletal muscle persisting in cellular myotubes cultured in vitro. Proc Nat Acad Sci, Sep 25. pii: 201705821. doi: 10.1073/pnas.1705821114.
  10. Zala D, Schlattner U, Desvignes T, Bobe J, Roux A, Chavrier P, Boissan M. The advantage of channeling nucleotides for very processive functions. Version 2. F1000Res. 2017 May 18 ;6:724.
  11. Chiaruttini N, Roux A. Dynamic and elastic shape transitions in curved ESCRT-III filaments. Curr Opin Cell Biol.2017 Aug;47:126-135.
  12. Shydlovskyi S, Zienert AY, Ince S, Dovengerds C, Hohendahl A, Dargazanli JM, Blum A, Günther SD, Kladt N, Stürzl M, Schauss AC, Kutsch M, Roux A, Praefcke GJK, Herrmann C. Nucleotide-dependent farnesyl switch orchestrates polymerization and membrane binding of human guanylate-binding protein 1. Proc Natl Acad Sci U S A. 2017 Jul 11;114(28):E5559-E5568.
  13. Roux A, Loewith R. Tensing Up for Lipid Droplet Formation. Dev Cell. 2017 Jun 19;41(6):571-572.
  14. Mierzwa BE*, Chiaruttini N*, Redondo-Morata L*, von Filseck JM, König J, Larios J, Poser I, Müller-Reichert T, Scheuring S, Roux A*, Gerlich DW*. Dynamic subunit turnover in ESCRT-III assemblies is regulated by Vps4 to mediate membrane remodelling during cytokinesis. Nat Cell Biol. 2017 Jul;19(7):787-798. News&Views in NCB.
  15. Daumke O, Roux A. Mitochondrial Homeostasis: How Do Dimers of Mitofusins Mediate Mitochondrial Fusion? Curr Biol. 2017 May 8;27(9):R353-R356.
  16. Colom A, Redondo-Morata L, Chiaruttini N, Roux A*, Scheuring S*. Dynamic remodeling of the dynamin helix during membrane constriction. Proc Natl Acad Sci U S A. 2017 May 23;114(21):5449-5454.
  17. Cardenal-Muñoz E, Arafah S, López-Jiménez AT, Kicka S, Falaise A, Bach F, Schaad O, King JS, Hagedorn M, Soldati T. (2017) Mycobacterium marinum antagonistically induces an autophagic response while repressing the autophagic flux in a TORC1- and ESX-1-dependent manner. PLoS Pathog. 13(4):e1006344.
  18. Barisch C, Soldati T. (2017) Mycobacterium marinum Degrades Both Triacylglycerols and Phospholipids from Its Dictyostelium Host to Synthesise Its Own Triacylglycerols and Generate Lipid Inclusions. PLoS Pathog. 13(1):e1006095.
  19. Leiba J, Sabra A, Bodinier R, Marchetti A, Lima WC, Melotti A, Perrin J, Burdet F, Pagni M, Soldati T, Lelong E, Cosson P. (2017) Vps13F links bacterial recognition and intracellular killing in Dictyostelium. Cell Microbiol. doi: 10.1111/cmi.12722
  20. Mesquita, A., Cardenal-Muñoz, E., Dominguez, E., Muñoz-Braceras, S., Nuñez-Corcuera, B., Philips, B.A., Tábara, L.C., Xiong, Q., Coria, R., Eichinger, L., Golstein, P., King, J.S., Soldati, T., Vincent, O. and Escalante, R. (2017) Autophagy in Dictyostelium: mechanisms, regulation and disease in a simple biomedical model Autophagy. 13(1):24-40

2016

  1. Savoglidis, G., A.X. da Silveiro Dos Santos, I. Riezman, P, Angelino, H. Riezman, V. Hatzimanikatis (2016) A method for analysis and design of metabolism using metabolomics data and kinetic models: application on lipidomics using a novel kinetic model of sphingolipid metabolism. Metab. Eng. April 22, pii: S1096-7176(16)30010-6. doi: 10.1016/j.ymben.2016.04.002. [Epub ahead of print]
  2. Sikorska, N., L. Lemus, A. Aguilera-Romero, J. Manzano-Lopez, H. Riezman, M. Muñiz and V. Goder (2016) Limited ER quality control for GPI-anchored proteins. J. Cell Biol., 213, 693-704. doi: 10.1083/jcb.201602010.
  3. Megyeri, M., H. Riezman, M. Schuldiner and A.H. Futerman (2016) Making sense of the yeast sphingolipid pathway. J. Mol. Biol., 428. 4765-4775. doi: 10.1016/j.jmb.2016.09.010.
  4. Soleimanpour S, Colom A, Derivery E, Gonzalez-Gaitan M, Roux A, Sakai N, Matile S. Headgroup engineering in mechanosensitive membrane probes. Chem Commun (Camb). 2016 Dec 13;52(100):14450-14453.
  5. Antonny B, Burd C, De Camilli P, Chen E, Daumke O, Faelber K, Ford M, Frolov VA, Frost A, Hinshaw JE, Kirchhausen T, Kozlov MM, Lenz M, Low HH, McMahon H, Merrifield C, Pollard TD, Robinson PJ, Roux A*, Schmid S. Membrane fission by dynamin: what we know and what we need to know. EMBO J. 2016 Nov 2;35(21):2270-2284.
  6. Hohendahl A, Roux A, Galli V. Structural insights into the centronuclear myopathy-associated functions of BIN1 and dynamin 2. J Struct Biol. 2016 Jun 22. pii: S1047-8477(16)30121-6.
  7. Alessandri K, Feyeux M, Gurchenkov B, Delgado C, Trushko A, Krause KH, Vignjević D, Nassoy P, Roux A. A 3D printed microfluidic device for production of functionalized hydrogel microcapsules for culture and differentiation of human Neuronal Stem Cells (hNSC). Lab Chip. 2016 Apr 26;16(9):1593-604.
  8. Buckley, C., Gopaldass, N., Johnston, S.A., Soldati, T., Insall, R.H, and King, J.S. (2016) WASH drives early recycling from macropinosomes and phagosomes to maintain surface phagocytic receptors. Proc Natl Acad Sci USA 113(40): E5906-E5915
  9. Zhang, X., and Soldati, T (2016) Of amoebae and men: Extracellular DNA traps as an ancient cell-intrinsic defence mechanism Frontiers in Immunology 7:269
  10. Van Voorhis, W.C., … Soldati, T., et al (2016) Open-source drug discovery with the Malaria Box compound collection for neglected diseases and beyond. PLoS Pathogens 12(7):e1005763
  11. Delincé, M., Bureau, J.-B., López Jiménez, A.T., Cosson, P., Soldati, T., and McKinney J. (2016) A microfluidic cell-trapping device for single-cell tracking of host-microbe interactions. Lab on a Chip 16(17):3276-85
  12. Guého, A., Bosmani, C., Molle, V., Gopaldass, N., Soldati, T., and Letourneur, F. (2016) Dictyostelium EHD associates with Dynamin and participate in phagosome maturation. J. Cell Sci 129(12):2354-6
  13. Zhang, X., Zhuchenko, O., Kuspa, A., and Soldati, T. (2016) Social amoebae trap and kill bacteria by casting DNA nets. Nat. Commun. 7:10938
  14. Slepikas, L., Chiriano, G., Perozzo, R., Tardy, S., Kranjc-Pietrucci, A., Patthey-Vuadens, O., Ouertatani-Sakouhi, H., Kicka, S., Harrison, C., Scrignari, T., Perron, K., Hilbi, H., Soldati, T., Cosson, P., Tarasevicius, E., Scapozza, L. (2016) In silico driven design and synthesis of rhodanine derivatives as novel antibacterials targeting the enoyl reductase InhA J. Med. Chem Jan 5
  15. Kicka, S., Arafah, S., and Soldati, T. (2015) Dictyostelium as a model to study the biology of mycobacteria. Chapter in: “Free-living amoebae: an evolutionary crib for emerging pathogens” in press
  16. Holtzer, L., Oleinich, I., Anzola, M., Lindberg, E, Sadhu, K., González-Gaitán, M., Winssinger, N. (2016) Nucleic acid templated chemical reaction in a live vertebrate. ACS Central Science 2 (6), 394-400.
  17. Mamińska, A., Bartosik, A., Banach-Orłowska, M., Pilecka, I., Jastrzębski, K., Zdżalik-Bielecka, D., Castanon, I., Poulain, M., Neyen, C., Wolińska-Nizioł, L., Toruń, A., Szymańska, E., Kowalczyk, A., Piwocka, K., Simonsen, A., Stenmark, H., Fürthauer, M., González-Gaitán, M., Miaczynska, M. (2016) ESCRT proteins restrict constitutive NF-κB signaling by trafficking cytokine receptors. Science signaling 411, ra8.
  18. Viktoria Wollrab, Raghavan Thiagarajan, Anne Wald, Karsten Kruse and Daniel Riveline (2016) Still and rotating myosin clusters determine cytokinetic ring constriction. Nat commun 7, 11860 http://www.nature.com/ncomms/2016/160701/ncomms11860/full/ncomms11860.html
  19. D. Johann, D. Goswami and K.Kruse (2016) Assembly of bipolar microtube structures by passive cross-linkers and molecular motors. Phys. Rev. E 93, 062415 http://journals.aps.org/pre/abstract/10.1103/PhysRevE.93.062415
  20. M. Fritzsche, C. Erlenkämper, E. Moeendarbary, G. Charras, K. Kruse (2016) Actin kinetics shapes cortical network structure and mechanics. Sci Adv 2, e1501337
  21. K.Kruse (2016) Cell Crawling Driven by Spontaneous Actin Polymerization Waves. I.S. Aranson (ed), Physical Models of Cell Motility, Springer International Publishing http://www.springer.com/gp/book/9783319244464?wt_mc=Internal.Event.1.SEM.ChapterAuthorCongrat

2015

  1. Chiaruttini N, Redondo-Morata L, Colom A, Humbert F, Lenz M, Scheuring S, Roux A. Relaxation of Loaded ESCRT-III Spiral Springs Drives Membrane Deformation. Cell. 2015 Nov 5;163(4):866-79. Highlighted in Dev Cell.
  2. Gonzalez-Gaitan M, Roux A. When cell biology meets theory. J Cell Biol. 2015 Sep 28;210(7):1041-5. Opinion article.
  3. Saleem M, Morlot S, Hohendahl A, Manzi J, Lenz M, Roux A. A balance between membrane elasticity and polymerization energy sets the shape of spherical clathrin coats. Nat Commun. 2015 Feb 19;6:6249. Highlighted in La Recherche.
  4. Dal Molin M, Verolet Q, Colom A, Letrun R, Derivery E, Gonzalez-Gaitan M, Vauthey E, Roux A, Sakai N, Matile S. Fluorescent flippers for mechanosensitive membrane probes. J Am Chem Soc. 2015 Jan 21;137(2):568-71.
  5. Dan Dunn J., Alvarez L.A., Zhang X., Soldati T. (2015) Reactive oxygen species and mitochondria: A nexus of cellular homeostasis. Redox Biol. 6:472-85
  6. Xie X., Gutiérrez A., Trofimov V., Szilagyi I., Soldati T., Bakker E. (2015) Charged Solvatochromic Dyes as Signal Transducers in pH Independent Fluorescent and Colorimetric Ion Selective Nanosensors. Anal Chem. 87(19):9954-9
  7. Harrison, C.F., Chiriano, G., Hoffmann, C., Petermann, O., Kranjc-Pietrucci, A., Patthey Vuadens, O., Kicka, S., Trovimov, V., Ouertatani-Sakouhi, H., Cosson, P., Soldati, T., Scapozza, L., and Hilbi, H. (2015) Amoebae-based screening reveals a novel family of compounds restricting intracellular Legionella. ACS Infectious Diseases 1 (7), pp 327–338
  8. Harrison C.F., Kicka, S., Kranjc-Pietrucci, A., Finsel, I., Chiriano, G., Ouertatani-Sakouhi, H., Soldati, T., Scapozza, L., and Hilbi, H. (2015) Adrenergic antagonists restrict replication of Legionella. Microbiology 161(7):1392-406
  9. Barisch, C., López-Jiménez, A.T., and Soldati, T. (2015) Live Imaging of Mycobacterium marinum Infection in Dictyostelium discoideum. Methods Mol Biol 1285:369-85.
  10. Xie, X., Gutiérrez, A., Trofimov, T., Szilagyi, I., Soldati, T., and Bakker E. (2015) Potassium Sensitive Optical Nanosensors Containing Voltage Sensitive Dyes, Chimia 69, No. 4 1-3
  11. Barisch, C., Paschke, P., Hagedorn, M., Maniak, M., and Soldati, T. (2015) Lipid Droplet Dynamics at Early Stages of Mycobacterium marinum Infection in Dictyostelium Cell Microbiol. 17(9):1332-1349
  12. Gerstenmaier, L., Pilla, R., Herrmann, L., Herrmann, H., Prado, M., Villafano, G.J., Kolonko, M., Reimer, R., Soldati, T., King, J.S., Hagedorn, M. (2015) The Autophagic Machinery Ensures non-lytic Transmission of Mycobacteria. Proc Natl Acad Sci USA 17;112(7):E687-92
  13. Derivery, E., Seum. C., Daeden, A., Loubéry, S., Holtzer, L., Jülicher, F., Gonzalez-Gaitan, M. (2015) Polarized endosome dynamics by spindle asymmetry during asymmetric cell division. Nature 528, 280-285.
  14. Gonzalez-Gaitan, M. & Roux, A. (2015) When cell biology meets theory. The Journal of cell biology 210, 1041-1045.
  15. Lukinavicius, G., Blaukopf, C., Pershagen, E., Schena, A., Reymond, L., Derivery, E., Gonzalez-Gaitan, M., D’Este, E., Hell, S. W., Wolfram Gerlich, D. & Johnsson, K. (2015) SiR-Hoechst is a far-red DNA stain for live-cell nanoscopy. Nature Communications 6, 8497.
  16. Romanova-Michaelidis, M., Aguilar-Hidalgo, D., Jülicher, F., González-Gaitán, M. (2015) The wing and the eye: a parsimonious theory for scaling and growth control? Wiley Interdisciplinary Reviews: Developmental Biology.
  17. Kressman, S., Campos, C., Castanon, I., Fürthauer, M. and González-Gaitán, M. (2015) Directional Notch trafficking in Sara endosomes during asymmetric cell division in the spinal cord. Nature Cell Biology 17(3): 333-339.
  18. Dal Molin, M., Verolet, Q., Colom, A., Letrun, R., Derivery, E., Gonzalez-Gaitan, M., Vauthey, E., Roux, A., Sakai, N. and Matile, S. (2015) Fluorescent Flippers for mechanosensitive membrane probes. Journal of the American Chemical Society 137(2): 568-571.
  19. Avinoam O, Schorb M, Beese CJ, Briggs JA, Kaksonen M. (2015) Endocytic sites mature by continuous bending and remodeling of the clathrin coat. Science 348:1369-72.
  20. Skruzny M, Desfosses A, Prinz S, Dodonova SO, Gieras A, Uetrecht C, Jakobi AJ, Abella M, Hagen WJ, Schulz J, Meijers R, Rybin V, Briggs JA, Sachse C, Kaksonen M. (2015) An organized co-assembly of clathrin adaptors is essential for endocytosis. Dev Cell. 33:150-62.
  21. Picco A, Mund M, Ries J, Nédélec F, Kaksonen M. (2015) Visualizing the functional architecture of the endocytic machinery. Elife. doi: 10.7554/eLife.04535.
  22. Manzano-Lopez, J., A.M. Perez-Linero, A. Aguilera-Romero, M.E. Martin, T. Okano, D. V. Silva, P.H. Seeberger, H. Riezman, K. Funato, V. Goder R.E. Wellinger, and M. Muñiz (2015) COPII coat composition is actively regulated by luminal cargo maturation. Curr. Biol., 25, 152-162.. doi: 10.1016/j.cub.2014.11.039.
  23. Wilson-Zbinden, C., A.X.Santos, I. Stoffel-Studer, A. van der Vaart, K. Hofmann, F. Reggiori, H. Riezman, C. Kraft and M. Peter (2015) Autophagy competes for a common phosphatidylethanolamine pool with major cellular PE- consuming pathways in Saccharomyces cerevisiae. Genetics, 199, 475-485. Early online December 17, 2014, doi:10.1534/genetics.114.169797
  24. Suresh, H.G., A. X.S. Santos, W. Kukulski, J. Tyedmers, H. Riezman, B. Bukau and A. Mogk (2015) Prolonged starvation drives reversible sequestration of lipid biosynthetic enzymes and organelle reorganization in Saccharomyces cerevisiae. Mol. Biol. Cell, 26, 1601-15. doi: 10.1091/mbc.E14-11-1559.
  25. Aimo, L., R. Liechti, N. Hyka-Nouspikel, A. Niknejad, A. Gleizes, L. Götz, D. Kuznetsov, P.D. David, F.G. van der Goot, H. Riezman, L Bougueleret, I. Xenarios, A. Bridge (2015) The SwissLipid knowledgebase for lipid biology. Bioinformatics 31: 2860-6. doi: 10.1093/bioinformatics/btv285
  26. Frechin, M., T. Stoeger, S. Daetwyler, C. Gehin, N. Battich, E-M. Damm, L. Stergiou, H. Riezman and L. Pelkmans (2015) Cell-intrinsic adapatation of lipid composition to local crowding drives social behavior. Nature, 523: 88-91. doi: 10.1038/nature 14429
  27. Blom, T., S. Li, A. Dichlberger, N. Bäck, Y.A. Kim, U. Loizides-Mangold, H. Riezman, R. Bittman, E. Ikonen (2015) LAPTM4B facilitates late endosomal ceramide export to control cell death pathways. Nature Chem. Biol, 11: 799-806. doi: 10.1038/nchembio.1889
  28. Muñiz, M. and H. Riezman (2015) Trafficking of glycosylphosphatidyl inositol anchored proteins from the endoplasmic reticulum to the cell surface. J. Lip. Res., published online, doi: 10.1194/jlr.R062760
  29. Alfonso Garcia, A., S.G. Pfisterer, H. Riezman, E. Ikonen and E.O. Potma (2015) D38-cholesterol as a Raman active probe for imaging intracellular cholesterol storage. J. Biomed. Opt., 21, 061003, doi:10.1117/1.JBO.21.6.061003
  30. Höglinger, D., P. Haberkant, A. Aguilera-Romero, H. Riezman, F.D. Porter, F.M. Platt, A. Galione and C. Schultz (2015) Intracellular sphingosine releases calcium from lysosomes via the two-pore channel 1. eLIFE, 10.7554/eLife.10616.
  31. D. Johann, D. Goswami and K. Kruse (2015) Generation of Stable Overlaps between Antiparallel Filaments. Phys. Rev. Lett. 115, 118103

2014

  1. Boissan M, Montagnac G, Shen Q, Griparic L, Guitton J, Romao M, Sauvonnet N, Lagache T, Lascu I, Raposo G, Desbourdes C, Schlattner U, Lacombe ML, Polo S, van der Bliek AM, Roux A, Chavrier P. Membrane trafficking. Nucleoside diphosphate kinases fuel dynamin superfamily proteins with GTP for membrane remodeling. Science. 2014 Jun 27;344(6191):1510-5.
  2. Gasparini G, Bang EK, Molinard G, Tulumello DV, Ward S, Kelley SO, Roux A, Sakai N, Matile S. Cellular uptake of substrate-initiated cell-penetrating poly(disulfide)s. J Am Chem Soc. 2014 Apr 23;136(16):6069-74.
  3. Daumke O, Roux A, Haucke V. BAR domain scaffolds in dynamin-mediated membrane fission. Cell. 2014 Feb 27;156(5):882-92.
  4. Kicka, S., Trofimov, V., Harrison, C.F., Ouertatani-Sakouhi, H., McKinney, J., Scapozza, L., Hilbi, H., Cosson, P., and Soldati, T. (2014) Establishment and validation of cell-based fluorescence assays to identify anti-mycobacterial compounds using the Acanthamoeba castellanii – Mycobacterium marinum host-pathogen system. PLoS ONE 9(1):e87834
  5. van der Goot FG, and Gruenberg J. 2014. Close encounter of the third kind: the ER meets endosomes at fission sites. Dev Cell. 2014 31:673-4
  6. Kufareva I, Lenoir M, Dancea F, Sridhar P, Raush E, Bissig C, Gruenberg J, Abagyan R, Overduin M. 2014. Discovery of novel membrane binding structures and functions. Biochem Cell Biol. 92:555-63.
  7. Bissig, C., and J. Gruenberg. 2014. ALIX and the multivesicular endosome: ALIX in Wonderland. Trends Cell Biol. 24:19-25.
  8. Johnson, S., and J. Gruenberg. 2014. The pathway of VSV entry into cells In Biology and Pathogenesis of Rhabdo- and Filoviruses, A. Paitnak, and M. Whitt, eds. World Scientific Publishing Co. (in press).
  9. Scott, C.C., F. Vacca, and J. Gruenberg. 2014. Endosome Maturation, Transport and Functions. Semin. Cell Dev. Biol.:http://dx.doi.org/10.1016/j.semcdb.2014.1003.1034.
  10. Loubéry, S., Seum, C., Moraleda, A., Daeden, A., Fürthauer, M. and Gonzalez-Gaitan, M. (2014) Uninflatable and Notch control the targeting of sara endosomes during asymmetric division. Current Biology 24(18):2142-2148.
  11. Montagne, C. and González-Gaitán, M. (2014) Sara endosomes and the asymmetric division of intestinal stem cells. Development 141:2014-2023.
  12. Wartlick, O., Jülicher, F. and González-Gaitán, M. (2014) Growth control by a moving morphogen gradient during Drosophila eye development. Development 141:1884-1893.
  13. González-Gaitán, M. and Jülicher, F. (2014) The role of Endocytosis during Morphogenetic Signaling. Cold Spring Harbor Perspectives in Biology 6:a016881.
  14. Loubéry, S. and González-Gaitán, M. (2014) Monitoring Notch/Delta endosomal trafficking and signaling in Drosophila. Methods in Enzymology 534:301.
  15. Boeke D, Trautmann S, Meurer M, Wachsmuth M, Godlee C, Knop M, Kaksonen M. (2014) Quantification of cytosolic interactions identifies Ede1 oligomers as key organizers of endocytosis. Mol. Syst. Biol. 10:756.
  16. Merrifield CJ, Kaksonen M. (2014) Endocytic accessory factors and regulation of clathrin-mediated endocytosis. Cold Spring Harb. Perspect. Biol. 6(11):a016733.
  17. Xiol J, Spinelli P, Laussmann MA, Homolka D, Yang Z, Cora E, Couté Y, Conn S, Kadlec J, Sachidanandam R, Kaksonen M, Cusack S, Ephrussi A, Pillai RS. (2014) RNA Clamping by Vasa Assembles a piRNA Amplifier Complex on Transposon Transcripts. Cell 157:1698-1711.
  18. Brach T, Godlee C, Moeller-Hansen I, Boeke D, Kaksonen M. (2014) The initiation of clathrin-mediated endocytosis is mechanistically highly flexible. Curr. Biol. 24: 548-554.
  19. Prifti, E., L. Reymond, M. Umebayashi, R. Hovius, H. Riezman* and K. Johnsson* (2014) A fluorogenic probe for SNAP-tagged plasma membrane proteins based on the solvatochromic molecule Nile Red. ACS Chemical Biology, online Jan 14, DOI: 10.1021/cb400819c * co-senior authors.
  20. Lakshminaravanan, R., S. Liu, J. Li, M. Nandhakumar, T.T. Aung, E. Goh, J.Y. Chang, P. Saraswathi, C. Tang, S.R. Safie, L.Y. Lin, H. Riezman, Z. Lei, C.S. Verma, R.W. Beuerman (2014) Synthetic multivalent antifungal peptides effect against fungi. PLoS One, Feb 3, 9(2):e87730. doi: 10.1371/journal.pone.0087730
  21. Da Silveira dos Santos, A.X., I. Riezman, M.A. Aguilera-Romero, F. David, M. Piccolis, R. Loewith, O. Schaad, and H. Riezman (2014) Systematic lipidomic analysis of yeast protein kinase and phosphatase mutants reveals novel insights into regulation of lipid homeostasis. Mol. Biol. Cell, 25, 3234-3246. mbc.E13-01- 0005; First Published on August 20, 2014; doi:10.1091/mbc.E13-01-0005
  22. Loizides-Mangold, U., S. Clément, A. Alfonso-Garcia, E. Branche, S. Conzelmann, C. Parisot, E.O. Potma, H. Riezman and F. Negro (2014) HCV3a core protein increases lipid droplet cholesteryl ester content via a mechanism dependent on sphingolipid biosynthesis. PLoS One, Dec 18;9(12):e115309. doi: 10.1371/journal.pone.0115309. eCollection 2014.
  23. D. Riveline and K. Kruse (2014) Effets collectifs des moteurs moléculaires : fonctions biologiques des oscillations mécaniques. Reflets phys. 42, 4-9
  24. M.Neef and K.Kruse (2014) Generation of stationary and moving vortices in active polar fluids in the planar Taylor-Couette geometry. Phys. Rev. E 90, 052703
  25. L. Wettmann, M. Bonny and K. Kruse (2014) Effects of molecular noise on bistable protein distributions in rod-shaped bacteria. Interface focus 4, 20140039
  26. A. Dreher, I S Aranson, and K. Kruse (2014) Spiral actin-polymerization waves can generate amoeboidal cell crawling. New J Phys 16, 055007
  27. D. Johann, D. Goswami, and K. Kruse (2014) Segregation of diffusible and directionally moving particles on a polar filament. Phys. Rev. E 89, 042713

2013

  1. Roux A, The physics of membrane tubes: soft templates for studying cellular membranes, Soft Matter, 2013, 9 (29), 6726 - 6736
  2. Morlot S & Roux A, Mechanics of Dynamin-mediated membrane fission. Ann. Rev. Biophys. 2013 May 6;42:629-49
  3. Bang EK, Gasparini G, Molinard G, Roux A, Sakai N, Matile S. Substrate-Initiated Synthesis of Cell-Penetrating Poly(disulfide)s. J Am Chem Soc. 2013 Feb 13;135(6):2088-91.
  4. Chiodini, F.*, Rodrigues, T.*, Skowronska-Krawczyk, D.*, Brodier, L., Schaad, O., Bauer, C., Ballivet, M., Matter-Sadzinski, L., and Matter, J.-M. (2013). A positive feedback loop between Atoh7 and a Notch effector regulates the cell cycle progression and neurogenesis in the retina. Cell Reports, 3, 796-807.
  5. Zhang, X., and Soldati, T. (2013) Detecting, visualizing and quantitating the generation of reactive oxygen species in an amoeba model system. J. Vis. Exp. (81), e50717
  6. Harrison, C.F., Kicka, S., Trofimov, V., Berschl, K., Ouertatani-Sakouhi, H., Ackermann, N., Hedberg, C., Cosson, P., Soldati, T., Hilbi, H. (2013) Exploring anti-bacterial compounds against intracellular Legionella. PLoS ONE 13;8(9):e74813
  7. King, J.S., Guého, A., Hagedorn, M., Gopaldass, N., Leuba, F., Soldati, T., and Insall, R.H. (2013) WASH is required for lysosomal recycling and efficient autophagic and phagocytic digestion. Mol Biol Cell 24(17):2714-26
  8. Zhang, X., Krause, K.H. Xenarios, I., Soldati, T., and Boeckmann B. (2013) Evolution of the Ferric Reductase Domain (FRD) Superfamily: Modularity, Functional Diversification, and Signature Motifs. PLoS ONE 8(3):e58126.
  9. Sattler, N., Monroy, R., and Soldati, T. (2013) Quantitative analysis of phagocytosis in Dictyostelium. Methods Mol. Biol. 983:383-402.
  10. Arafah, S., Kicka, S., Trofimov, T., Hagedorn, M., Andreu, N., Wiles, S, Robertson, B. and Soldati, T. (2013) Setting Up and Monitoring an Infection of Dictyostelium discoideum with Mycobacteria. Methods Mol. Biol. 83:403-1.
  11. Bissig, C., and J. Gruenberg. 2013. Lipid sorting and multivesicular endosome biogenesis. Cold Spring Harb Perspect Biol. (in press).
  12. Chamoun, Z., F. Vacca, R.G. Parton, and J. Gruenberg. 2013. PNPLA3/adiponutrin functions in lipid droplet formation. Biol Cell. 105:219-233.
  13. Bissig, C., M. Lenoir, M.C. Velluz, I. Kufareva, R. Abagyan, M. Overduin, and J. Gruenberg. 2013. Viral Infection Controlled by a Calcium-Dependent Lipid-Binding Module in ALIX. Developmental Cell. http://dx.doi.org/10.1016/j.devcel.2013.04.003
  14. Castanon, I., Abrami, L., Holtzer, L., Heisenberg, C.P., van der Goot, F.G. and González-Gaitán, M. (2013) Anthrax toxin receptor 2a controls mitotic spindle positioning. Nat Cell Biol, 15(1):28-39
  15. Guan, X.L., Cestra, G., Shui, G., Kuhrs, A., Schittenhelm, R.B., Hafen, E., van der Goot, F.G., Robinett, C.C., Gatti, M., González-Gaitán, M. and Wenk, M.R. (2013) Biochemical membrane lipidomics during Drosophila development. Dev Cell, 24(1):98-111
  16. Godlee C, Kaksonen M. (2013) From uncertain beginnings: Initiation mechanisms of clathrin-mediated endocytosis. J. Cell Biol. 203: 717-725.
  17. Maeda K, Anand K, Chiapparino A, Kumar A, Poletto M, Kaksonen M, Gavin AC. (2013) Interactome map uncovers phosphatidylserine transport by oxysterol-binding proteins. Nature 501:257-261.
  18. Gallego O, Specht T, Brach T, Kumar A, Gavin AC, Kaksonen M. (2013) Detection and characterization of protein interactions in vivo by a simple live-cell imaging method. PLoS One. 8:e62195.
  19. Epstein, S. and H. Riezman (2013) Sphingolipid signalling in yeast: potential implication for understanding disease. Front. Biosci. 5, 97-108.
  20. Gehin, C., J. Montenegro, E.K. Bang, A. Cajaraville, S. Takayama, H. Hirose, S. Futaki, S. Matile and H. Riezman (2013) Dynamic amphiphile libraries to screen for the “fragrant” delivery of siRNA into HeLa cells and human primary fibroblasts. J. Am. Chem. Soc., 135, 9295-9298.
  21. Lindberg, L. A.X. Santos, H. Riezman, L. Olsson and M. Bettiga (2013) Lipidomic profiling of Saccharomyces cerevisiae and Zygosaccharomyces bailii reveals critical changes in lipid composition in response to acetic acid stress. PLoS One 8, e 73936, doi 10.1371/journal.pone.0073936
  22. Ding, J. U. Loizides-Mangold, G. Rando, V. Zoete, C. Moret, O. Michielin, J. K. Reddy, W. Wahli, H. Riezman* and B. Thorens* (2013) The peroxisomal enzyme L-PBE is required to prevent the dietary toxicity of medium chain fatty acids. Cell Reports, 5, 248-258. doi: 10.1016/j.celrep.2013.08.03 * co-senior authors.
  23. Kajiwara, K. A. Ikeda, A. Aguilera-Romero, G.A. Castillon, S. Kagiwada, K. Hanada, H. Riezman, M. Muñiz, K. Funato (2013) Osh proteins regulate COPII- mediated vesicular transport of ceramide from the endoplasmic reticulum in budding yeast. J. Cell Sci. in press. doi: 10.1242/jcs.132001
  24. Zimmermann, C., A.X.S. Santos, K. Gable, S. Epstein, C. Gururaj, P. Chymkowitch, D. Pultz, S. V. Rødkær, L. Clay, M. Bjørås, Y. Barral, A. Chang, N. J. Færgeman, T. M. Dunn, H. Riezman, and J. M. Enserink (2013) GSK3- mediated Elo2 phosphorylation regulates very long chain fatty acid synthesis and autophagy. Cell Reports, 5, 1036-1046. doi: 10.1016/j.celrep.2013.10.024
  25. Aguilera-Romero, A., C. Gehin and H. Riezman (2013) Sphingolipid homeostasis in the web of metabolic routes. Biochim, Biophys. Acta. Pii: doi: 10.1016/j.bbalip.2013.10.014
  26. Cohen, Y., M. Megyeri, O.C.Chen, G. Condomitti, I. Riezman, U. Loizides-Mangold, A. Abdul-Sada, N. Rimon, H. Riezman, F.M. Platt, A.H. Futerman, and M. Schuldiner (2013) The yeast P5 type ATPase, Spf1, regulates manganese transport into the endoplasmic reticulum. PLoS One, Dec 31, 8(12) e85519, doi: 10.1371/journal.pone.0085519

2012

  1. Morlot S, Galli V, Klein M, Manzi J, Humbert F, Chiaruttini N, Dinis L, Lenz M, Cappello G, Roux A. (2012) Membrane shape of the edge of the dynamin helix sets location and duration of the fission reaction. Cell, 151:619-629. Highlighted in CURRENT BIOLOGY
  2. Koutsopoulos OS, Kretz C, Weller CM, Roux A, Mojzisova H, Böhm J, Koch C, Toussaint A, Heckel E, Stemkens D, Ter Horst SA, Thibault C, Koch M, Mehdi SQ, Bijlsma EK, Mandel JL, Vermot J, Laporte J. Dynamin 2 homozygous mutation in humans with a lethal congenital syndrome. Eur J Hum Genet. 2012 Oct 24.
  3. Kornmann B, Roux A. (2012) Lipids as organizers of cell membranes. EMBO rep, 13:667-669.
  4. Doval DA, Fin A, Takahashi-Umebayashi M, Riezman H, Roux A, Sakai N, Matile S. (2012) Amphiphilic dynamic NDI and PDI probes: imaging microdomains in giant unilamellar vesicles. Org & Biomol Chem, 10:6087-6093.
  5. Berchtold D, Piccolis M, Chiaruttini N, Riezman I, Riezman H, Roux A, Walther TC, Loewith R. (2012) Plasma membrane stress induces relocalization of Slm proteins and activation of TORC2 to promote sphingolipid synthesis. Nat Cell Biol, 14:542-547.
  6. Sorre, B., Callan-Jones, A., Manzi, J., Goud, B., Prost, J., Bassereau, P., and Roux, A. (2012). Nature of curvature coupling of amphiphysin with membranes depends on its bound density. PNAS 109, 173-178.
  7. Soldati. T., and Neyrolles, O. (2012) Mycobacteria and the Intraphagosomal Environment: Take It With a Pinch of Salt(s)! Traffic 13(8):1042-52.
  8. Dieckmann, R., Monroy, R., Bloomfield, G., Ruppert, T., and Soldati, T. (2012) A balance in the delivery of ER components and the vacuolar proton pump to the phagosome depends on Myosin IK in Dictyostelium. Mol. Cell Proteomics 11(10):886-900.
  9. Friedrich, N., Hagedorn, M., Soldati, T., and Soldati-Favre, D. (2012) Prison break: Pathogen strategies for host cell egress. Microbiology and Molecular Biology Reviews 76(4):707-20.
  10. Klionsky, D.J., … Soldati, T., et al (2012) Guidelines for the Use and Interpretation of Assays for Monitoring Autophagy in Higher Eukaryotes Autophagy 8:4, 1–100
  11. Essid, M., Gopaldass, N., Yoshida, K., Merrifield, C.,and Soldati, T. Rab8a regulates the exocyst-mediated kiss-and-run discharge of the Dictyostelium contractile vacuole. (2012) Mol. Biol. Cell 23(7):1267-82.
  12. Lima, W.C., Leuba, F., Soldati , T., and Cosson, P. (2012) Mucolipin controls lysosome exocytosis in Dictyostelium. J Cell Sci. 125(Pt 9):2315-22.
  13. Tollis, S., Gopaldass, N., Soldati, T., Endres R.G. (2012) How one cell eats another: principles of phagocytosis. Chapter6: in Systems Microbiology: Current Topics and Applications. Ed B.D. Robertson and B.W. Wren. Caister Academic Press.
  14. Jaiswal, P., Soldati, T., Thewes, S., and Baskar, R. (2012) Regulation of aggregate size and pattern by adenosine and caffeine in cellular slime molds BMC Dev Biol. 12(1):5.
  15. Gopaldass, N., Patel, D., Kratzke, R., Dieckmann, R., Hausherr, S., Hagedorn, M., Neuhaus, E.M., Hoffman, E., Hille, K., Kuznetsov, S., and Soldati, T. (2012) Dynamin A, Myosin IB and Abp1 couple phagosome maturation to F-actin binding. Traffic 13(1):120-30.
  16. Snijder, B., R. Sacher, P. Ramo, P. Liberali, K. Mench, N. Wolfrum, L. Burleigh, C.C. Scott, M.H. Verheije, J. Mercer, S. Moese, T. Heger, K. Theusner, A. Jurgeit, D. Lamparter, G. Balistreri, M. Schelhaas, C.A. De Haan, V. Marjomaki, T. Hyypia, P.J. Rottier, B. Sodeik, M. Marsh, J. Gruenberg, A. Amara, U. Greber, A. Helenius, and L. Pelkmans. 2012. Single-cell analysis of population context advances RNAi screening at multiple levels. Mol Syst Biol. 8:579.
  17. Falguières, T., J.D. Castle, and J. Gruenberg. 2012. Regulation of the MVB pathway by SCAMP3. Traffic. 13:131-142.
  18. Brankatschk, B., S.P. Wichert, S.D. Johnson, O. Schaad, M.J. Rossner, and J. Gruenberg. 2012. Regulation of the EGF Transcriptional Response by Endocytic Sorting. Science Signal. 5:ra21.
  19. Bissig, C., S. Johnson, and J. Gruenberg. 2012. Studying lipids involved in endocytosis. Meth. Cell Biol. 108:19-46.
  20. Wartlick, O., Mumcu, P., Jülicher, F. and González-Gaitán, M. (2012) Response to Comment on “Dynamics of Dpp Signaling and Proliferation Control”. Science, 335:401
  21. Kicheva, A., Bollenbach, T., Wartlick, O., Jülicher, F., and González-Gaitán, M. (2012) Investigating the principles of morphogen gradient formation: from tissues to cells. Curr Opin Genet Dev 22:1-6
  22. Kobayashi, T., Komatsu, T., Kamiya, M., Campos, C., González-Gaitán, M., Terai, T., Hanaoka, K., Nagano, T., Urano, Y. (2012) Highly Activatable and Environment-insensitive Optical Highlighters for Selective Spatiotemporal Imaging of Target Proteins. Journal of the American Chemical Society, 134, 11153-11160
  23. Skruzny M, Brach T, Ciuffa R, Rybina S, Wachsmuth M, and Kaksonen M. (2012) Molecular basis for coupling the plasma membrane to the actin cytoskeleton during clathrin-mediated endocytosis. PNAS. 109:E2533-2542.
  24. Kukulski W, Schorb M, Kaksonen M*, Briggs JA*. (2012) Plasma membrane reshaping during endocytosis is revealed by time-resolved electron tomography. Cell. 150:508-520.
  25. Kukulski W, Schorb M, Welsch S, Picco A, Kaksonen M and Briggs JAG (2012) Precise correlated fluorescence microscopy and electron tomography of Lowicryl sections using fluorescent fiducial markers. Methods in Cell Biol., 111:235-257.
  26. Epstein, S., C.L. Kirkpatrick, G.A. Castillon, M. Muñiz, I. Riezman, F.P.A. David, C.B. Wollheim and H. Riezman (2012) Activation of the unfolded protein response pathway causes ceramide accumulation in yeast and INS-1E insulinoma cells. J. Lipid Res. 53, 412-420, doi: 10.1194/jlr.M022186
  27. Doval, D.A., A. Fin, M. Takahashi-Umebayashi, H. Riezman, A. Roux, N. Sakai and S. Matile (2012) Amphiphilic dynamic NDI and PDI probes: Imaging microdomains in giant unilamellar vesicles. Org. Biomolec. Chem. DOI: 10.1039/C2OB25119A
  28. Berchtold, D., M. Piccolis, N. Chiaruttini, I. Riezman, H. Riezman, A. Roux, T.C. Walther and R. Loewith (2012) Plasma membrane stress induces relocalization of Slm proteins and activation of TORC2 to promote sphingolipid synthesis. Nature Cell Biol. 14, 542-7.doi:10.1038/ncb2480
  29. Epstein, S., G.A. Castillon, Y. Qin and H. Riezman (2012) An essential function of sphingolipids in yeast cell division. Molec. Microbiol., 84, 1018-32.
  30. Loizides-Mangold, U, F.P. David, V.J. Nesatyy, T. Kinoshita and H. Riezman (2012) GPI anchors regulate glycosphingolipid levels. J. Lipid. Res. 53, 1522—34. doi: 10.1194/jlr.M025692
  31. Jarmoszewicz, K. K. Lukasiak, H. Riezman and J. Kaminska (2012) Rsp5 ubiquitin ligase is required for protein trafficking in Saccharomyces cerevisiae COP1 mutants. PLoS One 7(6): e39582. doi:10.1371/journal.pone.0039582
  32. Santos, A.X. and H. Riezman (2012) Yeast as a model system for studying lipid homeostasis and function. FEBS Lett. 586, 2858-67 http://dx.doi.org/10.1016/j.febslet.2012.07.033

2011

  1. Takahashi-Umebayashi M, Pineau L, Hannich T, Zumbuehl A, Doval DA, Matile S, Heinis C, Turcatti G, Loewith R, Roux A, et al. (2011) Chemical biology approaches to membrane homeostasis and function. Chimia, 65:849-852.
  2. Shlomovitz, R., Gov, N., and Roux, A. (2011). membrane-mediated interactions and the dynamics of dynamin oligomers on membrane tubes. New Journal of Physics 13, 065008.
  3. Chang-Ileto, B., Frere, S.G., Chan, R.B., Voronov, S.V., Roux, A., and Di Paolo, G. (2011). Synaptojanin 1-Mediated PI(4,5)P(2) Hydrolysis Is Modulated by Membrane Curvature and Facilitates Membrane Fission. Dev Cell 20, 206-218.
  4. Lelièvre, E.C., Lek, M., Boije, H., Houille-Vernes, L., Brajeul, V., Slembrouck, A., Roger, J.E., Sahel, J.A., Matter, J.-M., Sennlaub, F., Hallböök, F., Goureau, O., and Guillonneau, X. (2011). XPtf1a/Rbpj complex inhibits ganglion cell fate and drives the specification of all horizontal cell subtypes in the chick retina. Developmental Biology, 15, 296-308.
  5. Carnell, M., Zech, T., Calaminus, S., Ura, S., Hagedorn, M., Johnston, S., May, R., Soldati, T., Machesky L., and Insall R. (2011) Actin Polymerization Driven by WASH Causes V-ATPase Retrieval and Vesicle Neutralization Before Exocytosis. J. Cell Biol 193(5):831-9.
  6. Lelong, E., Marchetti, A., Guého, A., Lima, W., Sattler, N., Molmeret, M., Hagedorn, M., Soldati, T., and Cosson, P. (2011) Role of magnesium and a phagosomal P-type ATPase in intracellular bacterial killing. $$="http://onlinelibrary.wiley.com/doi/10.1111/j.1462-5822.2010.01532.x/abstract;jsessionid=4938935FBCAE5D2B26CA212795F78950.d03t02">Cell. Microbiol. 13(2):246-58
  7. Brankatschk, B., V. Pons, R.G. Parton, and J. Gruenberg. 2011. Role of SNX16 in the dynamics of tubulo-cisternal membrane domains of late endosomes. PLoS ONE. 6(7):e21771. Epub 2011 Jul 6.
  8. Laulagnier, K., N.L. Schieber, T. Maritzen, V. Haucke, R.G. Parton, and J. Gruenberg. 2011. Role of AP1 and Gadkin in the traffic of secretory endo-lysosomes. Mol Biol Cell. [Epub ahead of print].
  9. Pons, V., C. Ustunel, C. Rolland, E. Torti, R.G. Parton, and J. Gruenberg. 2011. SNX12 role in endosome membrane transport. PLoS ONE. 7:e38949. doi:38910.31371/journal.pone.0038949.
  10. Scott, C.C., and J. Gruenberg. 2011. Ion flux and the function of endosomes and lysosomes: pH is just the start: the flux of ions across endosomal membranes influences endosome function not only through regulation of the luminal pH. Bioessays. 33:103-10.
  11. Scott, C.C., C. Bissig, and J. Gruenberg. 2011. Duelling functions of the V-ATPase EMBO J. 30:413-5.
  12. Wartlick, O., Mumcu, P., Kicheva, A., Bittig, T., Seum, C., Jülicher, F. and González-Gaitán, M. (2011) Dynamics of Dpp signalling and proliferation control. Science, 331:1154-1159
  13. Semrau, S., Holtzer, L., González-Gaitán, M. and Schmidt, T. (2011) Quantification of biological interactions with Particle Image Cross Correlation Spectroscopy (PICCS). Biophysical journal, 100:1810-8
  14. Campos, C., Kamiya, M., Banala, S., Johnsson, K. and Gonzá́lez-Gaitán M. (2011) Labelling Cell Structures and Tracking Cell Lineage in Zebrafish Using SNAP-Tag. Developmental Dynamics, 240:820-7
  15. Castanon, I. and González-Gaitán, M. (2011) Oriented cell division in vertebrate embryogenesis. Current Opin Cell Biol, 23:697-704
  16. Castanon, I. and González-Gaitán, M. (2011) Integrating levels of complexity: a trend in developmental biology. Current Opin Cell Biol, 23:647-9
  17. Wartlick, O. and González-Gaitán, M. (2011) The missing link: implementation of morphogenetic growth control on the cellular and molecular level. Current Opin Genet Dev, 21:690-5
  18. Wartlick, O., Mumcu, P., Jülicher, F. and González-Gaitán, M. (2011) Understanding morphogenetic growth control - lessons from flies. Nat Rev Mol Cell Biol, 12:594-604
  19. Kukulski W, Schorb M, Welsch S, Picco A, Kaksonen M*, Briggs JA* (2011) Correlated fluorescence and 3D electron microscopy with high sensitivity and spatial precision. J. Cell Biol. 192: 111-119.
  20. Brach T, Specht T, Kaksonen M (2011) Reassessment of the role of plasma membrane domains in the regulation of vesicular traffic in yeast. J. Cell Sci. 124: 328-337.
  21. Ternes, P, T. Wobbe, M. Schwarz, S. Albrecht, K. Feussner, I. Riezman, J.M. Cregg, E. Heinz, H. Riezman, I. Feussner, and D. Warneke (2011) Two Pathways of Sphingolipid Biosynthesis Are Separated in the Yeast Pichia pastoris. J. Biol. Chem. 186, 11401-11414.
  22. Shivapurkar, R, C.M. Souza, D. Jeannerat, and H. Riezman (2011) An Efficient Method for the Production of Isotopically Enriched Cholesterol for NMR. J. Lipid Res.52, 1062-1065. Hannich, J.T., E.V. Entchev, F. Mende, H. Boytchev, R. Martin, V.
  23. Hannich, J.T., K. Umebayashi and H. Riezman (2011) Distribution and Functions of Sterols Sphingolipids. Cold Spring Harb.Perspect. Biol., ed. Kai Simons, Cold Spring Harbor Laboratory Press, pp 189-202.
  24. Castillon, G.A, A. Aguilera-Romero, J. Manzano, S. Epstein, K. Kajiwara, K. Funato, R. Watanabe, H. Riezman and M. Muñiz (2011) The yeast p24 complex regulates GPI-anchored protein transport and quality control by monitoring anchor remodeling. Mol. Biol. Cell, 22, 2924-2936.
  25. Fujita, M., R. Watanabe, N. Jaensch, M. Romanova-Michaelides, T. Satoh, M. Kato, H. Riezman, Y. Yamaguchi, Y. Maeda and T. Kinoshita (2011) Sorting of GPI-anchored proteins into ER exit sites by p24 proteins is dependent on remodeled GPI. J. Cell Biol., 194, 61-75.
  26. Souza, C.M., T.M. Schwabe, H. Pichler, B. Ploier, E. Leitner, X.L. Guan, M.R. Wenk, I Riezman and H. Riezman (2011) A stable yeast strain efficiently producing cholesterol instead of ergosterol is functional for tryptophan uptake, but not weak organic acid resistance. Metab. Eng. 13, 555-569.
  27. Ternes, P., K. Feussner, S. Werner, J. Lerche, T. Iven, I. Heilmann, H. Riezman and I. Feussner (2011) Disruption of the Ceramide Synthase LOH1 Causes Spontaneous Cell Death in Arabidopsis thaliana. New Phytologist, 192, 841-54.
  28. Lissina, E., B. Young, M.L. Urbanus, X.L. Guan, J. Lowenson, S. Hoon, A. Baryshnikova, I. Riezman, M. Michaut, G. Bader, H. Riezman, L. Cowen, M.R. Wenk, S. Clarke, G. Giaever and C. Nislow (2011) A Systems Biology Approach Reveals the Role of a Novel Methyltransferase in Response to Chemical Stress and Lipid Homeostasis. PLoS Genet 7(10): e1002332. doi:10.1371/journal.pgen.1002332
  29. Jennemann, R., M. Rabionet, K. Gorgas, S. Epstein, A. Dalpke, U. Rothermel, A Bayerle, F. van der Hoeven, S. Imgrund, J. Kirsch, W. Nickel, K. Willecke, H. Riezman, H.J. Gröne and R. Sandhoff (2011) Loss of ceramide synthase 3 causes lethal skin barrier disruption. Hum. Mol. Genet. 21, 586-608.
  30. Alvarez-Vasquez, F., H. Riezman, Y.A. Hannun and E.O. Voit (2011) Mathematical Modeling and Validation of the Ergosterol Pathway in Saccharomyces cerevisiae. PLoS ONE 6(12): e28344. doi:10.1371/journal.pone.0028344
  31. Sturzenegger, S., K. Johnsson, and H. Riezman (2011) NCCR Chemical Biology: Interdisciplinary Research Excellence, Outreach, Education, and New Tools for Switzerland. Chimia, 65, 832-834.
  32. Takahashi-Umebayashi, M., L. Pineau, T. Hannich, A. Zumbuehl, D. A. Doval, S. Matile, C. Heinis, G. Turcatti, R. Loewith, A. Roux, L. Reymond, K. Johnsson and H. Riezman (2011) Chemical Biology Approaches to Membrane Homeostasis and Function. Chimia 65, 849-852.
  33. Montenegro, J., C. Gehin, E-K. Bang, A. Fin, D.A. Doval, H. Riezman, N. Sakai and S. Matile (2011) Conceptually New Entries into Cells. Chimia 65, 853- 858.

2010

  1. Morlot, S., Lenz, M., Prost, J., Joanny, J.F., and Roux, A. (2010). Deformation of dynamin helices damped by membrane friction. Biophys J 99, 3580-3588.
  2. Roux, A., Koster, G., Lenz, M., Sorre, B., Manneville, J.B., Nassoy, P., and Bassereau, P. (2010). Membrane curvature controls dynamin polymerization. Proc Natl Acad Sci U S A 107, 4141-4146. highlighted in PHYSICS TODAY
  3. Boulais, J., Trost, M., Landry, C., Dieckmann, R., Levy, E., Soldati, T., Michnick, S., Thibault, P., and Desjardins. M. (2010) Molecular characterization of the evolution of phagosomes. Mol. Syst. Biol. 6:423
  4. Calvo-Garrido, J., Carilla-Latorre, S., Kubohara, Y., Santos, N., Mesquita, A., Soldati, T., Golstein, P., and Escalante, R. (2010) Autophagy in Dictyostelium: genes and pathways, cell death and infection. Autophagy. 6:688-701
  5. Pino, P., Aeby, E., Foth, B.J., Sheiner, L., Soldati, T., Schneider, A., and Soldati-Favre, D. (2010) Mitochondrial translation in absence of local tRNA aminoacylation and methionyl-tRNAMet formylation in Apicomplexa. Mol. Microbiol. 76(3):706-718.
  6. Dieckmann, R., von Heyden, SY, Kistler, C., Gopaldass, N., Hausherr, S., Crawley, S.W., Schwarz, E, Diensthuber, R.F., Côté, G.P., Tsiavaliaris, G., and Soldati, T. (2010) A myosin IK-Abp1-PakB circuit acts as a switch to regulate phagocytosis efficiency. Mol. Biol. Cell 21(9):1505-1518.
  7. Goursot, A., T. Mineva, C. Bissig, J. Gruenberg, and D.R. Salahub. 2010. Structure, dynamics, and energetics of lysobisphosphatidic acid (LBPA) isomers. J Phys Chem B. 114:15712-20.
  8. Assaker, G., Ramel, D., Wculek, S. K., González-Gaitán, M. and Emery, G. (2010) Spatial restriction of receptor tyrosine kinase activity through a polarized endocytic cycle controls border cell migration. PNAS, 107: 22558-63
  9. Kicheva, A., Holtzer, L. Wartlick, O., Schmidt, T. and González-Gaitán, M. (2010) Quantitative Imaging of Morphogen Gradients in Drosophila Imaginal Discs. Book Chapter in “Imaging in Developmental Biology: A Laboratory Manual”. Cold Spring Harbor Laboratory Press
  10. Mottola, G., Classen, A.-K., González-Gaitán, M., Eaton, S., and Zerial, M. A novel function for the Rab5 effector Rabenosyn-5 in planar cell polarity. (2010) Development, 137:2353-2364
  11. Gallego O, Betts MJ, Gvozdenovic-Jeremic J, Maeda K, Matetzki C, Aguilar-Gurrieri C, Beltran-Alvarez P, Bonn S, Fernández-Tornero C, Jensen LJ, Kuhn M, Trott J, Rybin V, Müller CW, Bork P, Kaksonen M, Russell RB, Gavin AC (2010) A systematic screen for protein–lipid interactions in Saccharomyces cerevisiae. Mol. Syst. Biol. 6:430.
  12. Guan, X.L., I. Riezman, M.R. Wenk and H. Riezman (2010) Yeast Lipid Analysis and Quantification by Mass Spectrometry. Guide to Yeast Genetics: Book Series. Meth. Enzymol. 470, 369-391.
  13. Bourquin, F., H. Riezman, G. Capitani and M.G. Grütter (2010) Structure and Function of Sphingosine-1-Phosphate Lyase, a Key Enzyme of Sphingolipid Metabolism. Structure 18, 1054-1065
  14. Carvalho, M., D. Schwudke, J.L. Sampaio, W. Palm, I. Riezman, G. Dey, G.D. Gupta, S. Mayor, H. Riezman, A. Shevchenko, T.V. Kurzchalia and S. Eaton (2010) Survival strategies of a sterol auxotroph. Development, 137, 3675- 3685.

2009

  1. Lenz, M., Morlot, S., and Roux, A. (2009). Mechanical requirements for membrane fission: common facts from various examples. FEBS Lett 583, 3839-3846.
  2. Skowronska-Krawczyk*, D., Chiodini*, F., Ebeling, M., Alliod, C., Kundzewicz, A., Castro, D., Ballivet, M., Guillemot, F., Matter-Sadzinski, L., and Matter, J.-M. (2009). Conserved regulatory sequences in Atoh7 mediate non-conserved regulatory responses in retina ontogenesis. Development, 136, 3767-3777.
  3. Gonzalez-Gaitan, M., Gruenberg, J., Halazonetis, T., Laemmli, U.K., Matter, J.-M., Riezman, H., Schaad, O., Soldati, T., and Watanabe, R. (2009). The biochemistry department of the university of Geneva: Understanding the molecular basis and function of intracellular organization. CHIMIA, 63, 830-834.
  4. Hagedorn, M., Kyle H. Rohde, David G. Russell, and Soldati, T. (2009) Infection by tubercular mycobacteria is spread by nonlytic ejection from their amoeba hosts. Science 323, 1729-1733.
  5. Dieckmann, R., and Soldati, T. (2009) Phagosome proteomes unite! A virtual model of maturation as a tool to study pathogen-induced changes. In Intracellular Niches of Microbes: A Pathogens Guide Through the Host Cell, Ed Schaible, U.E., and Haas, A. John Wiley & Sons, Ltd, 107-124.
  6. Hagedorn, M., and Soldati, T. (2009) Mycobacterium marinum. In Intracellular Niches of Microbes: A Pathogens Guide Through the Host Cell, Ed Schaible, U.E., and Haas, A. John Wiley & Sons, Ltd, 455-467.
  7. Falguières, T., P. P. Luyet and J. Gruenberg (2009). "Molecular assemblies and membrane domains in multivesicular endosomes." Exp Cell Res 315:1567-73.
  8. Gruenberg, J. (2009) “Viruses and endosome membrane dynamics” Curr Opin Cell Biol. 21:582-588.
  9. Morel, E. and J. Gruenberg (2009). "Annexin A2 binding to endosomes and functions in endosomal transport are regulated by tyrosine 23 phosphorylation." J. Biol. Chem. 284: 1604–1611.
  10. Morel, E., R. G. Parton and J. Gruenberg (2009). "Annexin A2-dependent polymerization of actin mediates endosome biogenesis." Dev. Cell. 16: 445-457.
  11. Wartlick, O., Kicheva, A. and Gonzalez-Gaitan, M. A. Morphogen gradient formation. Book chapter in “Morphogen gradients”. Vincent, J. P., Briscoe, J. and Lawrence, (2009) Cold Spring Harbor Perspect Biol 1(3):a001255
  12. Oates, A.C., Gorfinkiel, N., González-Gaitán, M. and Heisenberg, C.P. Quantitative approaches in developmental biology (2009) Nat Rev Genet 10:517-30
  13. Fürthauer, M., González-Gaitán, M.Endocytosis and mitosis: a two way relationship. Cell Cycle 8:3311-3318
  14. Fürthauer, M., González-Gaitán, M. Tales of 1001 functions: the multiple roles of membrane trafficking in development. (2009) Traffic 10:781-2
  15. Fürthauer, M., González-Gaitán, M. Endocytic regulation of Notch signalling during development. (2009) Traffic 10:792-802
  16. Fürthauer, M., González-Gaitán, M. Endocytosis, asymmetric cell division, stem cells and cancer: Unus pro omnibus, omnes pro uno. (2009) Mol. Oncol. 3:339-53
  17. Coumailleau, F., Fürthauer, M., Knoblich, J.A. and González-Gaitán, M. Directional Delta and Notch trafficking in asymmetric Sara endosomes during asymmetric cell division. (2009) Nature 458, 1051-5
  18. Peralta, S., Gómez, Y., González-Gaitán, M., Moya, F and Vinos, J. Notch down-regulation by endocytosis is essential for pigment cell determination and survival in the Drosophila retina. (2009) Mech. Dev. 126:256-269
  19. Bittig, T., Wartlick, O., González-Gaitán, M., Jülicher, F. Quantification of growth asymmetries in developing epithelia. (2009) Eur Phys J E Soft Matter 30:93-9
  20. Guan, X, C.M. Souza, H. Pichler, G. Dewhurst, O. Schaad, K. Kajiwara , H. Wakabayashi, T. Ivanova, G. A. Castillon, M. Piccolis, F. Abe, R. Loewith, K. Funato, M. R. Wenk*, and H. Riezman* (2009) Functional Interactions between
  21. Co-senior authors and corresponding authors Chosen as Molecular Biology of the Cell Paper of the Year 2009 Sphingolipids and Sterols in Biological Membranes Regulating Cell Physiology. Mol. Biol. Cell, 20, 2083–2095.
  22. Mulhauser, M. O. Hengartner, M. Gomez, H.Riezman* and J.-C. Martinou* (2009) Protection of C. elegans from anoxia by HYL-2 ceramide synthase. Science 324, 381-384. Co-senior authors and corresponding authors Menuz, V., K. S. Howell, S. Gentina, S. Epstein, I. Riezman, M. Fornallaz-
  23. Zagoriy, G. Theumer, I. Riezman, H. Riezman, H.J. Knölker and T.V. Kurzchalia (2009) Methylation of the Sterol Nucleus by STRM-1 Regulates Dauer Larva Formation in Caenorhabditis elegans. Dev. Cell 16, 833-843.
  24. Deshusses, J. and H. Riezman (2009) History of Biochemistry at the University of Geneva: From the Boulevard des Philosophes to Quai Ernest Ansermet. Chimia 63, 826-829.
  25. González-Gaitán, M., J. Gruenberg, T. Halazonetis, U.K. Laemmli, J.M. Matter, H. Riezman, O. Schaad, T. Soldati, and R. Watanabe (2009) The Biochemistry Department of the University of Geneva: Understanding the Molecular Basis of Intracellular Organization. Chimia 63, 830-834.

2008

  1. Frost, A., Perera, R., Roux, A., Spasov, K., Destaing, O., Egelman, E.H., De Camilli, P., and Unger, V.M. (2008). Structural basis of membrane invagination by F-BAR domains. Cell 132, 807-817. highlighted in Cell Preview.
  2. Krauss, M., Jia, J., Roux, A., Beck, R., Wieland, F., De Camilli, P., and Haucke, V. (2008). Arf1-GTP-induced Tubule Formation Suggests a Function of Arf Family Proteins in Curvature Acquisition at Sites of Vesicle Budding. Journal of Biological Chemistry 283, 27717-27723.
  3. Roux, A., and Antonny, B. (2008). The long and short of membrane fission. Cell 135, 1163-1165.
  4. Kundzewicz A., Munier F., and Matter, J.-M. (2008). Expression and cell compartmentalization of EFEMP1, a protein associated with Malattia Leventinese. Adv Exp Med Biol. 613, 277-281.
  5. Heng, J.I., Nguyen, L., Castro, D.S., Zimmer, C., Wildner, H., Armant, O., Skowronska-Krawczyk, D., Bedogni, F., Matter, J.M., Hevner, R., and Guillemot F. (2008). Neurogenin 2 controls cortical neuron migration through regulation of Rnd2. Nature, 455, 114-118.
  6. Dieckmann, R., Gopaldass, N., Escalera, C., and Soldati, T. (2008) Monitoring time-dependent maturation changes in purified phagosomes from Dictyostelium discoideum. Methods Mol. Biol. 445, 327-337.
  7. Cosson, P, and Soldati, T. (2008) Eat, kill or die: when amoeba meets bacteria. Current Opinion Microbiol. 11, 271-276
  8. Cataldo, A. M., P. M. Mathews, A. B. Boiteau, L. C. Hassinger, C. M. Peterhoff, Y. Jiang, K. Mullaney, R. L. Neve, J. Gruenberg and R. A. Nixon (2008). "Down Syndrome Fibroblast Model of Alzheimer-Related Endosome Pathology. Accelerated Endocytosis Promotes Late Endocytic Defects." Am J Pathol. 173: 370-84.
  9. Chevallier, J., Z. Chamoun, G. Jiang, G. D. Prestwich, N. Sakai, S. Matile, R. G. Parton and J. Gruenberg (2008). "Lysobisphosphatidic acid controls endosomal cholesterol levels." J. Biol. Chem. 283: 27871–80.
  10. Falguières, T., P. P. Luyet, C. Bissig, C. C. Scott, M.-C. Velluz and J. Gruenberg (2008). "In vitro budding of intralumenal vesicles into late endosomes is regulated by Alix and Tsg101." Mol Biol Cell 19: 4942-55.
  11. Kirkegaard-Sorensen, T., A. Roth, I. Moilanen, A. Zylicz, E. Schmitt, J. Gruenberg, C. Arenz, C. Garrido, K. Sandhoff, P. K. J. Kinnunen, J. Nylandsted and M. Jaattela (2008). "Interaction between Hsp70 and bis( monoacylglycero) phosphate stabilizes lysosomes and promotes cell survival." APMIS 116: 436-437
  12. Luyet, P. P., T. Falguières, V. Pons, A. K. Pattnaik and J. Gruenberg (2008). "The ESCRT-I subunit Tsg101 controls endosome-to-cytosol release of viral RNA." Traffic 9:2279–90.
  13. Mitrovic, S., H. Ben-Tekaya, E. Koegler, J. Gruenberg and H. P. Hauri (2008). "The Cargo Receptors Surf4, Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)-53, and p25 Are Required to Maintain the Architecture of ERGIC and Golgi." Mol Biol Cell 19(5): 1976-90.
  14. Pons, V., P.-P. Luyet, E. Morel, L. Abrami, F. G. van der Goot, R. G. Parton and J. Gruenberg (2008). "Hrs and SNX3 functions in sorting and membrane invagination within multivesicular bodies." PLoS Biology 6(9): e214. doi:10.1371/journal.pbio.0060214.
  15. Kicheva, A., and Gonzalez-Gaitan, M. (2008). The Decapentaplegic morphogen gradient: a precise definition Curr. Op. Cell Biol. 20, 137-143
  16. Gonzalez-Gaitan, M. (2008). The Garden of Forking Paths: Recycling, Signaling, Degradation. Dev Cell 15, 172-174
  17. Coumailleau, F., and Gonzalez-Gaitan, M. (2008). From endocytosis to tumors through asymmetric cell division of stem cells. Curr Opin Cell Biol 20, 462-469
  18. Bollenbach, T., Pantazis, P., Kicheva, A., Boekel, C., Gonzalez-Gaitan, M., and Juelicher, F. (2008). Precision of the Dpp gradient. Development 135, 137-143
  19. Bittig, T., Wartlick, O., Kicheva, A., Gonzalez-Gaitan, M., and Jülicher, F. (2008). Dynamics of anisotropic tissue growth. New J. Physics 10, 063001-063011
  20. Kaksonen M, (2008) Taking apart the endocytic machinery. J. Cell Biol. 180:1059-1060.
  21. Te Welscher YM, H.H. Ten Napel, M. Masià Balagué, C.M. Souza, H. Riezman, B. de Kruijff, and E. Breukink (2008) Natamycin blocks fungal growth by binding specifically to ergosterol without permeabilizing the membrane. J. Biol. Chem. 283, 6393-6401
  22. Aguilera, M.A, J. Kaminska, A. Spang, H. Riezman, and M. Muñiz (2008) The yeast p24 complex participates in the formation of COPI retrograde transport vesicles from the Golgi apparatus. J. Cell Biol., 180, 713-20.
  23. Idrissi, F.-Z., H. Grötsch, I. M. Fernandez-Golbano, C. Prescianotto- Baschong, H. Riezman, and M.-I. Geli (2008) Distinct acto/myosin structures associate with endocytic profiles at the plasma membrane. J. Cell Biol,. 180, 1219-32.
  24. Kajiwara, K., R. Watanabe, H. Pichler, K. Ihara, S. Murakami, H. Riezman, and K. Funato (2008) Yeast ARV1 is required for efficient delivery of an early GPI intermediate to the first mannosyltransferase during GPI assembly and controls lipid flow from the ER. Mol. Biol. Cell. 19, 2069-2082.
  25. Watanabe, R., G.A. Castillon, A. Meury and H. Riezman (2008) The presence of an ER exit signal determines the protein sorting upon ER exit in yeast.Biochem.J., 414,237-45.
  26. Mukhopadhyay, D. K.S. Howell, H. Riezman*, and G. Capitani (2008) Sphinganine-1-phosphate lyase: identifying key residues for function in vivo and in vitro. J. Biol. Chem., 283, 20159-69. *Corresponding author
  27. Castillon, G.A., R. Watanabe, M. Taylor, T.M.E. Schwabe, and H. Riezman (2008) Concentration of GPI-anchored proteins upon ER exit in yeast. Traffic, 10, 186-200.

2007

  1. Roux, A., Biais, N., and Bassereau, P. (2007). Import-Export dans la cellule. In POUR LA SCIENCE, pp. 46-52.
  2. Hernandez, J., Matter-Sadzinski, L., Skowronska-Krawczyk, D., Chiodini, F., Alliod, C., Ballivet, M., Matter, J.-M. (2007). Highly conserved sequences mediate the dynamic interplay of basic helix-loop-helix proteins regulating retinogenesis. J Biol Chem, 282, 37894-37905.
  3. Del Bene, F., Ettwiller, L., Skowronska-Krawczyk, D., Baier, H., Matter, J.-M., Birney, E., Wittbrodt J. (2007). In vivo validation of a computationally predicted conserved Ath5 target gene set. PLoS Genet, 3, 1661-1671.
  4. Pino, P., Foth, B.J., Kwok, L., Sheiner, L., Schepers, R., Soldati, T., and Soldati, D. (2007) Dual targeting of antioxidant and metabolic enzymes to the mitochondrion and the apicoplast of Toxoplasma gondii. PLOS Pathogens. 3(8):e115.
  5. Hagedorn, M., and Soldati, T. (2007) Flotillin and the RacH GTPase modulate intracellular immunity of Dictyostelium to Mycobacterium marinum infection. Cell Microbiol. 9, 2716-2733.
  6. Felberbaum-Corti, M., E. Morel, V. Cavalli, F. Vilbois and J. Gruenberg (2007). "The redox sensor TXNL1 plays a regulatory role in fluid phase endocytosis." PLoS ONE 2(11): e1144.
  7. Morel, E. and J. Gruenberg (2007). "The p11/S100A10 light chain of annexin A2 is dispensable for annexin A2 association to endosomes and functions in endosomal transport." PLoS ONE 2(10): e1118.
  8. Sbrissa, D., O. C. Ikonomov, Z. Fu, T. Ijuin, J. Gruenberg, T. Takenawa and A. Shisheva (2007). "Core protein machinery for mammalian phosphatidylinositol 3,5-bisphosphate synthesis and turnover that regulates the progression of endosomal transport. Novel Sac phosphatase joins the ArPIKfyve-PIKfyve complex." J Biol Chem 282(33): 23878-91.
  9. Sobo, K., J. Chevallier, R. G. Parton, J. Gruenberg and F. G. van der Goot (2007). "Diversity of raft-like domains in late endosomes." PLoS ONE 2(4): e391.
  10. Sobo, K., I. Le Blanc, P. P. Luyet, M. Fivaz, C. Ferguson, R. G. Parton, J. Gruenberg and F. G. van der Goot (2007). "Late endosomal cholesterol accumulation leads to impaired intra-endosomal trafficking." PLoS ONE 2(9): e851.
  11. Pantazis, P., and Gonzalez-Gaitan, M. (2007). Localized multiphoton photoactivation of paGFP in Drosophila wing imaginal discs. J Biomed Opt 12, 044004
  12. Kicheva, K., Pantazis, P., Bollenbach, T., Kalaidzidis, Y., Bittig, T., Jülicher, F., and Gonzalez-Gaitan, M. (2007). Kinetics of morphogen gradient formation. Science 315, 521-525
  13. Dyer, N., Rebollo, E., Dominguez, P., Elkhatib, N., chavrier, P., Daviet, L., González, C., and González-Gaitán, M. (2007). Spermatocyte cytokinesis requires rapid membrane addition mediated by Arf6 on central spindle recycling endosomes. Development 134, 4437-4447
  14. Bollenbach, T., Kruse, K., Pantazis, P., González-Gaitán, M., and Julicher, F. (2007). Morphogen transport in epithelia. Phys Rev E Stat Nonlin Soft Matter Phys 75, (1 Pt 1):011901
  15. Sun Y, Carroll S, Kaksonen M, Toshima JY, Drubin DG. (2007) PtdIns(4,5)P2 turnover is required for multiple stages during clathrin- and actin-dependent endocytic internalization. J. Cell Biol. 177: 355-367.
  16. Mukhopadhyay, D. and H. Riezman (2007) Proteasome-independent functions of ubiquitin in endocytosis and signaling. Science, 315, 201-205.
  17. Urban J, A. Soulard, A. Huber, S. Lippman, D. Mukhopadhyay, O. Deloche, V. Wanke, D. Anrather, G. Ammerer, H. Riezman, J.R. Broach, C. De Virgilio, M.N. Hall and R. Loewith. (2007) Sch9 Is a Major Target of TORC1 in Saccharomyces cerevisiae. Mol. Cell. 26, 663-674.
  18. Riezman, H. (2007) The Long and Short of Fatty Acid Synthesis. Cell 130, 587-588.

2006

  1. Roux, A., Uyhazi, K., Frost, A., and De Camilli, P. (2006). GTP-dependent twisting of dynamin implicates constriction and tension in membrane fission. Nature 441, 528-531. highlighted in Journal of Cell Biology
  2. Castro, D.S., Skowronska-Krawczyk, D., Armant, O., Donaldson, I.J., Parras, C., Hunt, C., Critchley, J.A., Nguyen, L., Gossler, A., Göttgens, B., Matter, J.-M., and Guillemot, F. (2006). Proneural bHLH and Brn proteins coregulate a neurogenic program through cooperative binding to a conserved DNA motif. Developmental Cell, 11, 831-844.
  3. Gotthardt, D., Blancheteau, V., Bosserhoff, A., Ruppert, T., Delorenzi, M., and Soldati, T. (2006) Proteomic fingerprinting of phagosome maturation reveals a role for a Galpha during uptake. Mol. Cell. Proteomics. 5, 2228-2243.
  4. Yoshida, K., and Soldati, T. (2006) Dissection of amoeboid movement into two mechanically distinct modes. J. Cell Sci. 119, 3833-3844
  5. Hagedorn, M., Neuhaus, E.N., Soldati, T. (2006) Optimised fixation and immunofluorescence protocols for Dictyostelium cells. Methods Mol. Biol. 346, 327-338.
  6. Gotthardt, D., Dieckmann, R., Blancheteau, V., Kistler, C., Reichardt, F., and Soldati, T. (2006) Preparation of intact, highly purified phagosomes from Dictyostelium. Methods Mol. Biol., 346, 439-448.
  7. Soldati, T., and Schliwa, M. (2006) Powering membrane traffic in endocytosis and recycling. Nat. Rev. Mol. Cell Biol. 7, 897-908.
  8. Brissoni, B., L. Agostini, M. Kropf, F. Martinon, V. Swoboda, S. Lippens, H. Everett, N. Aebi, S. Janssens, E. Meylan, M. Felberbaum-Corti, H. Hirling, J. Gruenberg, J. Tschopp and K. Burns (2006). "Intracellular trafficking of interleukin-1 receptor I requires Tollip." Curr Biol 16(22): 2265-70.
  9. Chevallier, J. and J. Gruenberg (2006). "Lipid Membrane Domains in Endosomes." In "Endosomes" (Dikic I, ed). Georgetown, TX: Landes Bioscience.
  10. Gruenberg, J. and F. G. van der Goot (2006). "Toxoplasma: guess who’s coming to dinner." Cell 125(2): 226-8.
  11. Gruenberg, J. and F. G. van der Goot (2006). "Mechanisms of pathogen entry through the endosomal compartments." Nat Rev Mol Cell Biol 7(7): 495-504.
  12. van der Goot, F. G. and J. Gruenberg (2006). "Intra-endosomal membrane transport." Trends Cell Biol 16: 514-21.
  13. Dudu, V., Bittig, T., Entchev, E., Kicheva, A., Julicher, F., and González-Gaitán, M. (2006). Postsynaptic Mad signaling at the Drosophila neuromuscular junction. Curr Biol 16, 625-635
  14. Bokel, C., Schwabedissen, A., Entchev, E., Renaud, O., and Gonzalez-Gaitan, M. (2006). Sara endosomes and the maintenance of Dpp signaling levels across mitosis. Science 314, 1135-1139
  15. Winkler, S., Schwabedissen, A., Backasch, D., Bokel, C., Seidel, C., Bonisch, S., Furthauer, M., Kuhrs, A., Cobreros, L., Brand, M., et al. (2005). Target-selected mutant screen by TILLING in Drosophila. Genome Res 15, 718-723
  16. Emery, G., Hutterer, A., Berdnik, D., Mayer, B., Wirtz-Peitz, F., Gaitán, M.G., and Knoblich, J.A. (2005). Asymmetric Rab 11 endosomes regulate delta recycling and specify cell fate in the Drosophila nervous system. Cell 122, 763-773
  17. Bollenbach, T., Kruse, K., Pantazis, P., González-Gaitán, M., and Julicher, F. (2005). Robust formation of morphogen gradients. Phys Rev Lett 94, 018103
  18. Kaksonen M, Drubin DG. (2006) PALM reading: Seeing the future of cell biology at higher resolution. Dev. Cell 11: 438-439.
  19. Liu J, Kaksonen M, Drubin DG, Oster G. (2006) Endocytic vesicle scission by lipid phase boundary forces. PNAS 103: 10277-10282.
  20. Kaksonen M, Toret CP, Drubin DG. (2006) Harnessing actin dynamics for clathrin-mediated endocytosis. Nat. Rev. Mol. Cell Biol. 7:404-414.
  21. Meier, K.D., O. Deloche, K. Kajiwara, K. Funato and H. Riezman (2006) Sphingoid base is required for translation initiation during heat stress in Saccharomyces cerevisiae. Mol. Biol. Cell, 17, 1164-1175.
  22. Grosshans, B.L., H. Grotsch, D. Mukhopadhyay, I.M. Fernandez, J. Pfannstiel, F.Z. Idrissi, J. Lechner, H. Riezman and M.I. Geli (2006) TEDS site phosphorylation of the yeast myosins I is required for ligand-induced but not for constitutive endocytosis of the G protein-coupled receptor Ste2p. J. Biol. Chem. 281, 11104-11114.
  23. Funato, K. and H. Riezman (2006) Sphingolipid Trafficking. in Sphingolipid Biology, Springer, eds Y. Hirabayashi, Y. Igarashi, and A.H. Merrill Jr. pages 123-139.
  24. Kageyama-Yahara, N. and H. Riezman (2006) Transmembrane topology of ceramide synthase in yeast. Biochem J. 398, 585-593.

2005

  1. Itoh, T., Erdmann, K.S., Roux, A., Habermann, B., Werner, H., and De Camilli, P. (2005). Dynamin and the actin cytoskeleton cooperatively regulate plasma membrane invagination by BAR and F-BAR proteins. Dev Cell 9, 791-804.
  2. Jolimaître, P., Roux, A., Blanpain, A., Leduc, C., Bassereau, P., and Bourel-Bonnet, L. (2005). Synthesis and preliminary physical applications of a rhodamin-biotin phosphatidylethanolamine, an easy attainable lipid double probe. Chem Phys Lipids 133, 215-223.
  3. Roux, A., Cuvelier, D., Nassoy, P., Prost, J., Bassereau, P., and Goud, B. (2005). Role of curvature and phase transition in lipid sorting and fission of membrane tubules. EMBO J 24, 1537-1545. Highlighted in EMBO reports
  4. Skowronska-Krawczyk, D., Sadzinski-Matter, L., Ballivet, M., and Matter, J.-M. (2005). The basic domain of ATH5 mediates neuron-specific promoter activity during retina development. Mol Cell Biol. 25, 10029-10039.
  5. Matter-Sadzinski L., Puzianowska-Kuznicka, M., Hernandez, J., Ballivet M. and Matter J.-M. (2005) A bHLH transcriptional network regulating the specification of retinal ganglion cells.
 Development, 132, 3907-3921.
  6. Felberbaum-Corti, M., V. Cavalli and J. Gruenberg (2005). "Capture of the small GTPase Rab5 by GDI: regulation by p38 MAP kinase." Methods Enzymol 403: 367-81.
  7. Gagescu, R. and J. Gruenberg (2005). "Immuno-isolation of organelles using magnetic solid supports." in "Cell Biology, Four-Volume Set - A Laboratory Handbook(Volume 1-4)" Third Edition (by J. Celis, K. Simons, J.V. Small, T. Hunter and D. Shotton, eds) Vol 2: 27-31.
  8. Jiang, G., Y. Xu, T. Falguieres, J. Gruenberg and G. D. Prestwich (2005). "Concise synthesis of ether analogues of lysobisphosphatidic acid." Org Lett 7(18): 3837-40.
  9. Le Blanc, I., P. P. Luyet, V. Pons, C. Ferguson, N. Emans, A. Petiot, N. Mayran, N. Demaurex, J. Faure, R. Sadoul, R. G. Parton and J. Gruenberg (2005). "Endosome-to-cytosol transport of viral nucleocapsids." Nat Cell Biol 7(7): 653-64.
  10. Robinson, L. J. and J. Gruenberg (2005). "Assays measuring membrane transport in the endocytic pathway." in "Cell Biology, Four-Volume Set - A Laboratory Handbook(Volume 1-4)" Third Edition (by J. Celis, K. Simons, J.V. Small, T. Hunter and D. Shotton, eds) Vol 2: 201-208.
  11. Kaksonen M, Toret CP, Drubin DG. (2005) A modular design for the clathrin- and actin- mediated endocytosis machinery. Cell 123: 305-320.
  12. Martin AC, Xu XP, Rouiller I, Kaksonen M, Sun Y, Belmont L, Volkmann N, Hanein D, Welch M, Drubin DG. (2005) Effects of Arp2p and Arp3p nucleotide-binding pocket mutations on Arp2/3 complex function. J. Cell Biol. 168: 315-328.
  13. Sun Y, Kaksonen M, Madden DT, Schekman R, Drubin DG. (2005) Interaction of Sla2p’s ANTH domain with PtdIns(4,5)P2 is important for actin-dependent endocytic internalization. Mol. Biol. Cell 16: 717-730.
  14. Vallée, B. and H. Riezman (2005) Lip1p: a novel subunit of acyl-CoA ceramide synthase. EMBO J., 24, 730-741.
  15. Futerman, A. H. and H. Riezman (2005) The ins and outs of Sphingolipid synthesis. Trends Cell Biol. 15, 312-218.

2004

  1. Leduc, C., Campàs, O., Zeldovich, K.B., Roux, A., Jolimaitre, P., Bourel-Bonnet, L., Goud, B., Joanny, J.F., Bassereau, P., and Prost, J. (2004). Cooperative extraction of membrane nanotubes by molecular motors. Proc Natl Acad Sci USA 101, 17096-17101.
  2. Allain, J.M., Storm, C., Roux, A., Ben Amar, M., and Joanny, J.F. (2004). Fission of a multiphase membrane tube. Phys Rev Lett 93, 158104.
  3. Skowronska-Krawczyk, D., Ballivet, M., Dynlacht, B.D. and Matter, J.-M. (2004). Highly specific interactions between bHLH transcription factors and chromatin during retina development. Development, 131, 4447-4454.
  4. Lefkir, Y., Malbouyres, M., Gotthardt, Ozinsky, A., D., Bruckert, F., Aderem, A.A., Soldati, T., Cosson, P., and Letourneur, F. (2004) Involvement of the AP-1 adaptor complex in early steps of phagocytosis and macropinocytosis. Mol. Biol. Cell, 15, 861-869.
  5. Soldati, T. and Kistler, C. (2004) Do class I myosins exert their function through regulation of actin dynamics? Cell Motility. From Molecules to Organisms, Ed Ridley, A., Peckham, M. and Clark, P. John Wiley & Sons, Ltd, 40-59.
  6. Faure, J., R. Stalder, C. Borel, K. Sobo, V. Piguet, N. Demaurex, J. Gruenberg and D. Trono (2004). "ARF1 regulates Nef-induced CD4 degradation." Curr Biol 14(12): 1056-64.
  7. Felberbaum-Corti, M., R. Gagescu and J. Gruenberg (2004). "Membrane Trafficking in the Endocytic Pathway of Eukaryotic Cell." in "Cellular Microbiology" 2nd Edition (P. Cossart, P. Boquet, S. Normark & R. Rappuoli, Eds). American Society for Microbiology Press.
  8. Gruenberg, J. and H. Stenmark (2004). "The biogenesis of multivesicular endosomes." Nat Rev Mol Cell Biol 5(4): 317-23.
  9. Matsuo, H., J. Chevallier, N. Mayran, I. Le Blanc, C. Ferguson, J. Faure, N. S. Blanc, S. Matile, J. Dubochet, R. Sadoul, R. G. Parton, F. Vilbois and J. Gruenberg (2004). "Role of LBPA and Alix in multivesicular liposome formation and endosome organization." Science 303(5657): 531-4.
  10. Vieira, O. V., R. E. Harrison, C. C. Scott, H. Stenmark, D. Alexander, J. Liu, J. Gruenberg, A. D. Schreiber and S. Grinstein (2004). "Acquisition of Hrs, an essential component of phagosomal maturation, is impaired by mycobacteria." Mol Cell Biol 24(10): 4593-604.
  11. Williams, P.H., Hagemann, A., González-Gaitán, M., and Smith, J.C. (2004). Visualizing long-range movement of the morphogen Xnr2 in the Xenopus embryo. Curr Biol 14, 1916-1923
  12. Kruse, K., Pantazis, P., Bollenbach, T., Julicher, F., and González-Gaitán, M. (2004). Dpp gradient formation by dynamin-dependent endocytosis: receptor trafficking and the diffusion model. Development 131, 4843-4856
  13. Dudu, V., Pantazis, P., and González-Gaitán, M. (2004). Membrane traffic during embryonic development: epithelial formation, cell fate decisions and differentiation. Curr Opin Cell Biol 16, 407-414
  14. Riezman, H. (2004) Why do cells require heat shock proteins to survive heat stress? Cell Cycle, 3, 61-63.
  15. Riezman, H and G. van Meer (2004) Lipid pickup and delivery. Nature Cell Biol. 6, 15-16.
  16. Mayor, S. and H. Riezman (2004) Sorting GPI-anchored proteins. Nature Rev. Mol. Cell Biol. 5, 110-120.
  17. Sobering. A.K., R. Watanabe, M.J. Romeo, B.C. Yan, C.A. Specht, P. Orlean, H. Riezman, and D.E. Levin (2004) Yeast Ras regulates the complex that catalyzes
  18. the first step in GPI-anchor biosynthesis at the ER. Cell, 117, 637-648.
  19. Watanabe, R. and H. Riezman (2004) Differential ER exit in yeast and mammalian cells. Curr. Opin. Cell Biol. 16, 350-355.
  20. Pichler, H. and H. Riezman (2004) Where sterols are required for endocytosis. Biochem. Biophys. Acta 1666, 51-61.
  21. Rodal. A.A., O. Sokolova, D.B. Robins, K.M. Daugherty, S. Hippenmeyer, H. Riezman, N. Grigorieff and B.L. Goode (2004) Conformational changes in the Arp2/3 complex leading to actin nucleation. Nature Struct. Mol. Biol. 12, 26 – 31.

2003

  1. Abaza, A., Soleilhac, J.M., Westendorf, J., Piel, M., Crevel, I., Roux, A., and Pirollet, F. (2003). M phase phosphoprotein 1 is a human plus-end-directed kinesin-related protein required for cytokinesis. J Biol Chem 278, 27844-27852.
  2. Nizak, C., Martin-Lluesma, S., Moutel, S., Roux, A., Kreis, T.E., Goud, B., and Perez, F. (2003). Recombinant antibodies against subcellular fractions used to track endogenous Golgi protein dynamics in vivo. Traffic 4, 739-753.
  3. Soldati, T. (2003) Unconventional myosins, actin dynamics and endocytosis: A ménage à trois? Traffic, 4, 358-366.
  4. Gruenberg, J. (2003). "Lipids in endocytic membrane transport and sorting." Curr Opin Cell Biol 15(4): 382-8.
  5. Mayran, N., R. G. Parton and J. Gruenberg (2003). "Annexin II regulates multivesicular endosome biogenesis in the degradation pathway of animal cells." Embo J 22(13): 3242-53.
  6. Petiot, A., J. Faure, H. Stenmark and J. Gruenberg (2003). "PI3P signaling regulates receptor sorting but not transport in the endosomal pathway." J Cell Biol 162(6): 971-9.
  7. Vieira, O. V., C. Bucci, R. E. Harrison, W. S. Trimble, L. Lanzetti, J. Gruenberg, A. D. Schreiber, P. D. Stahl and S. Grinstein (2003). "Modulation of Rab5 and Rab7 recruitment to phagosomes by phosphatidylinositol 3-kinase." Mol Cell Biol 23(7): 2501-14.
  8. Wucherpfennig, T., Wilsch-Brauninger, M., and González-Gaitán, M. (2003). Role of Drosophila Rab5 during endosomal trafficking at the synapse and evoked neurotransmitter release. J Cell Biol 161, 609-624
  9. González-Gaitán, M., and Stenmark, H. (2003). Endocytosis and signaling: a relationship under development. Cell 115, 513-521
  10. González-Gaitán, M. (2003). Signal dispersal and transduction through the endocytic pathway. Nat Rev Mol Cell Biol 4, 213-224
  11. González-Gaitán, M. (2003). From disease to development to cell biology and back. Development 130, 5053-5057
  12. González-Gaitán, M. (2003). Endocytic trafficking during Drosophila development. Mech Dev 120, 1265-1282
  13. Kaksonen M, Sun Y, Drubin DG. (2003) A pathway for association of receptors, adaptors and actin during endocytic internalization. Cell 115: 475-487.
  14. Sekiya-Kawasaki M, Groen AC, Cope MJ, Kaksonen M, Watson HA, Zhang C, Shokat KM, Wendland B, McDonald KL, McCaffery JM, Drubin DG. (2003) Dynamic phosphoregulation of the cortical actin cytoskeleton and endocytic machinery revealed by real-time chemical genetic analysis. J. Cell Biol. 162: 765-772.
  15. Pomorski T, R. Lombardi, H. Riezman, P.F. Devaux, G. Van Meer and J.C. Holthuis (2003) Drs2p-related P-type ATPases Dnf1p and Dnf2p are required for phospholipid translocation across the yeast plasma membrane and serve a role in endocytosis. Mol. Biol. Cell. 14, 1240-54.
  16. Schaerer-Brodbeck, C. and H. Riezman (2003) Genetic and biochemical interactions between the Arp2/3 complex, Cmd1p, casein kinase II, and Tub4p in yeast. FEMS Yeast Res., 4, 37-49.
  17. Morsomme, P. C. Prescianotto-Baschong and H. Riezman (2003) The ER v-SNAREs are required for GPI-anchored protein sorting from other secretory proteins upon exit from the ER. J. Cell Biol., 162, 403-412.
  18. Friant, S., K.D. Meier and H. Riezman (2003) Increased ubiquitin- dependent degradation can replace the essential requirement for heat shock protein induction. EMBO J., 22, 3783-3791.

2002

  1. Roux, A., Cappello, G., Cartaud, J., Prost, J., Goud, B., and Bassereau, P. (2002). A minimal system allowing tubulation with molecular motors pulling on giant liposomes. Proc Natl Acad Sci USA 99, 5394-5399.
  2. Gotthardt, D., Warnatz, H.J., Henschel, O., Brückert, F., Schleicher, M., and Soldati, T. (2002) High resolution dissection of phagosome maturation reveals distinct membrane trafficking phases. Mol. Biol. Cell 13, 3508-3520.
  3. Herm-Götz, A., Weiss, S., Stratmann, R., Fujita-Becker, S., Ruff, C., Meyhöfer, E., Soldati, T, Manstein, D.J., Geeves, M.A., and Soldati, D. (2002) Toxoplasma gondii myosin A and its light chain: a fast, single-headed, plus-end directed motor. EMBO J. 21, 2149-2158.
  4. Neuhaus, E.M., Almers, W., and Soldati, T. (2002) Morphology and dynamics of the endocytic pathway in Dictyostelium discoideum. Mol. Biol. Cell 13, 1390-1407.
  5. Kobayashi, T., M. H. Beuchat, J. Chevallier, A. Makino, N. Mayran, J. M. Escola, C. Lebrand, P. Cosson, T. Kobayashi and J. Gruenberg (2002). "Separation and characterization of late endosomal membrane domains." J Biol Chem 277(35): 32157-64.
  6. Lebrand, C., M. Corti, H. Goodson, P. Cosson, V. Cavalli, N. Mayran, J. Faure and J. Gruenberg (2002). "Late endosome motility depends on lipids via the small GTPase Rab7." Embo J 21(6): 1289-300.
  7. Sorice, M., D. Ferro, R. Misasi, V. Pittoni, A. Longo, A. Circella, T. Garofalo, R. Gradini, F. Violi, J. Gruenberg and G. Valesini (2002). "Evidence for anticoagulant activity and beta2-GPI accumulation in late endosomes of endothelial cells induced by anti-LBPA antibodies." Thromb Haemost 87(4): 735-41.
  8. van der Goot, F. G. and J. Gruenberg (2002). "Oiling the wheels of the endocytic pathway." Trends Cell Biol 12(7): 296-9.
  9. Felberbaum-Corti, M., F. G. Van Der Goot and J. Gruenberg (2003). "Sliding doors: clathrin-coated pits or caveolae?" Nat Cell Biol 5(5): 382-4.
  10. Guichet, A., Wucherpfennig, T., Dudu, V., Etter, S., Wilsch-Brauniger, M., Hellwig, A., González-Gaitán, M., Huttner, W.B., and Schmidt, A.A. (2002). Essential role of endophilin A in synaptic vesicle budding at the Drosophila neuromuscular junction. EMBO J 21, 1661-1672
  11. Entchev, E.V., and González-Gaitán, M.A. (2002). Morphogen gradient formation and vesicular trafficking. Traffic 3, 98-109
  12. Berdnik, D., Torok, T., González-Gaitán, M., and Knoblich, J.A. (2002). The endocytic protein alpha-Adaptin is required for numb-mediated asymmetric cell division in Drosophila. Dev Cell 3, 221-231
  13. Kaksonen M, Pavlov I, Voikar V, Lauri SE, Hienola A, Riekki R , Lakso M, Taira T, Rauvala H. (2002) Syndecan-3 Deficient Mice Exhibit Enhanced LTP and Impaired Hippocampus-Dependent Learning. Mol. Cell. Neurosci. 21: 158-172.
  14. Pavlov I, Voikar V, Kaksonen M, Lauri SE, Hienola A, Taira T, Rauvala H. (2002) Role of Heparin-Binding Growth-Associated Molecule (HB-GAM) in hippocampal LTP and spatial learning revealed by studies on overexpressing and knockout mice. Mol. Cell Neurosci. 20: 330-342.
  15. Prescianotto-Baschong, C. and H. Riezman (2002) Ordering of compartments in the yeast endocytic pathway. Traffic 3, 37-49.
  16. Morsomme, P. and H. Riezman (2002) The Rab GTPase Ypt1p and tethering factors couple protein sorting at the ER to vesicle targeting to the Golgi apparatus. Dev. Cell 2, 307-317.
  17. Roh, D.-H., B. Bowers, H. Riezman, and E. Cabib (2002) Rho1p mutations specific for regulation of β(1→3)glucan synthesis and the order of assembly of the yeast cell wall. Mol. Microbiol., 44, 1167-1184.
  18. Riezman, H. (2002) The ubiquitin connection. Nature 416, 381-382.
  19. Henry, K.R., K. D'Hondt, J. Chang, T. Newpher, K. Huang, R.T. Hudson, H. Riezman, and S.K. Lemmon (2002) Scd5p and clathrin function are important for cortical actin organization, endocytosis and localization of Sla2p in yeast. Mol. Biol. Cell, 13, 2607-2625.
  20. Heese-Peck, A., H. Pichler, B. Zanolari, R. Watanabe, G. Daum, and H. Riezman (2002) Multiple functions of sterols in yeast endocytosis. Mol. Biol. Cell, 13, 2664-2680.
  21. Venkataraman, K., C. Riebeling, J. Bodennec, H. Riezman, J.C. Allegood, M.C. Sullards, A.H. Merrill and A.H. Futerman (2002) Upstream of growth and differentiation factor 1 (uog1), a mammalian homolog of the yeast longevity assurance gene 1 (LAG1), regulates N-stearoyl-sphinganine (C18- (dihydro)ceramide) synthesis in a fumonisin B1-independent manner in mammalian cells. J. Biol. Chem. 377, 35642-35649.
  22. Funato, K., B. Vallée and H. Riezman (2002) Biosynthesis and trafficking of sphingolipids in the yeast Saccharomyces cerevisiae. Biochemistry, 41, 15105-15114.
  23. Watanabe, R., K. Funato, K. Venkataraman, A.H. Futerman and H. Riezman (2002) Sphingolipids are required for the stable membrane association of glycosylphosphatidylinositol-anchored proteins in yeast. J. Biol. Chem., 277, 49538-49544. (IF = 6.4)
  24. Funato, K., R. Lombardi, B. Vallée and H. Riezman (2002) Lcb4p is a Key Regulator of Ceramide Synthesis from Exogenous Long Chain Sphingoid Base in Saccharomyces cerevisiae. J. Biol. Chem., 278, 7325-7534.

2001

  1. Matter-Sadzinski, L., Matter, J.-M., Ong, M.T., Hernandez, J. and Ballivet, M. (2001). Specification of neurotransmitter receptor identity in developing retina: the chick ATH5 promoter integrates the positive and negative effects of several bHLH proteins. Development, 128, 217-231.
  2. Delbac, F., Sänger A., Neuhaus, E.M., Stratmann, R., Ajioka, J.W., Toursel, C., Herm-Götz, A., Tomavo S., Soldati, T., and Soldati, D. (2001) Toxoplasma gondii myosins B/C: One gene, two tails, two localizations and a role in parasite division. J. Cell Biol., 155, 613-623.
  3. Gillespie, P.G., Soldati, T., et al. (2001) Myosin-I nomenclature. J. Cell Biol. 155, 704-704.
  4. Cavalli, V., F. Vilbois, M. Corti, M. J. Marcote, K. Tamura, M. Karin, S. Arkinstall and J. Gruenberg (2001). "The stress-induced MAP kinase p38 regulates endocytic trafficking via the GDI:Rab5 complex." Mol Cell 7(2): 421-32.
  5. Cavalli, V., M. Corti and J. Gruenberg (2001). "Endocytosis and signaling cascades: a close encounter." FEBS Lett 498(2-3): 190-6.
  6. Dunoyer-Geindre, S., E. K. Kruithof, B. Galve-de Rochemonteix, C. Rosnoblet, J. Gruenberg, G. Reber and P. de Moerloose (2001). "Localization of beta2-glycoprotein 1 in late endosomes of human endothelial cells." Thromb Haemost 85(5): 903-7.
  7. Fratti, R. A., J. M. Backer, J. Gruenberg, S. Corvera and V. Deretic (2001). "Role of phosphatidylinositol 3-kinase and Rab5 effectors in phagosomal biogenesis and mycobacterial phagosome maturation arrest." J Cell Biol 154(3): 631-44.
  8. Gruenberg, J. (2001). "The endocytic pathway: a mosaic of domains." Nat Rev Mol Cell Biol 2(10): 721-30.
  9. Felberbaum-Corti, M. and J. Gruenberg (2002). "Signaling from the far side." Mol Cell 10(6): 1259-60.
  10. Reizes O, Lincecum J, Wang Z, Goldberger O, Huang L, Kaksonen M, Ahima R, Hinkes MT, Barsh GS, Rauvala H, Bernfield M. (2001) Transgenic expression of syndecan-1 uncovers a physiological control of feeding behavior by syndecan-3. Cell 106: 105-116.
  11. Muñiz, M., P. Morsomme, and H. Riezman (2001) Protein sorting upon exit from the endoplasmic reticulum. Cell, 104, 313-320. (IF = 28.4)
  12. Lombardi, R. and H. Riezman (2001) Rvs161p and Rvs167p, the two yeast amphiphysin homologs, function together in vivo. J. Biol. Chem., 276, 6016- 6022. (IF = 6.4)
  13. Lombardi, R., S. Friant, and H. Riezman (2001) Endocytosis in Saccharomyces cerevisiae: involvement of actin, actin-associated protein complexes, lipids in the internalization step, in Frontiers in Molecular Biology, Oxford University Press, Ed. M. Marsh.
  14. Wiederkehr, A., K.D. Meier, and H. Riezman (2001) Identification and characterization of eleven S. cerevisiae mutants defective in fluid-phase endocytosis. Yeast, 18, 759-773. (IF, not available)
  15. Galan, J.M., A. Wiederkehr, J.H. Seol, R. Haguenauer-Tsapis, R.J. Deshaies, H. Riezman, and M. Peter (2001) Skp1p and the F-box protein Rcy1p form a non- SCF complex involved in recycling of the SNARE Snc1p in yeast. Mol. Cell. Biol., 21, 3105-3117.
  16. Zahn, R., B.J. Stevenson, S. Schröder-Köhne, B. Zanolari, H. Riezman, and A.L. Munn (2001) End13p/Vps4p Is required for efficient transport from early to late endosomes in Saccharomyces cerevisiae. J. Cell Sci., 114, 1935-1947.
  17. Schörling, S., B. Vallée, W.P. Barz, H. Riezman, and D. Oesterhelt (2001) Lag1p and Lac1p are essential for the acyl-CoA-dependent ceramides synthase reaction in Saccharomyces cerevisiae. Mol. Biol. Cell, 12, 3417-3427.
  18. Friant, S., R. Lombardi, T. Schmelzle, M.N. Hall, and H. Riezman (2001) Sphingosine signalling via PKH kinases is required for endocytosis in yeast. EMBO J., 20, 6783-6792.
  19. Funato, K. and H. Riezman (2001) Vesicular and non-vesicular transport of ceramide from ER to the Golgi apparatus in yeast. J. Cell. Biol., 155, 949-959.

2000

  1. Matter, J.-M. and Ballivet, M. (2000). Gene structure and transcriptional regulation of the neuronal nicotinic acetylcholine receptors. In Handbook of Experimental Pharmacology, vol. 144, (Clementi, Fornasari, Gotti, eds) pp 33-55 (Springer-Verlag).
  2. Erkman, L., Matter, J.-M., Matter-Sadzinski, L. and Ballivet, M. (2000). Nicotinic acetylcholine receptor gene expression in developing chick autonomic ganglia. Eur. J. Pharmacol. 393, 97-104.
  3. Monnat, J., Neuhaus, E.M., Pop, M.S., Ferrari, D., Kramer, B., and Soldati, T. (2000) Identification of a novel saturable endoplasmic reticulum localization mechanism mediated by the C-terminus of a Dictyostelium protein disulfide isomerase. Mol. Biol. Cell 11, 3469-3484.
  4. Neuhaus, E.M., and Soldati, T. (2000) A myosin I is involved in membrane recycling from early endosomes. J. Cell Biol. 150, 1013-1026.
  5. Lang, T., Wacker, I., Wunderlich, I., Rohrbach, A., Giese, G., Soldati, T., and Almers, W. (2000) Role of actin cortex in the subplasmalemmal transport of secretory granules in PC-12 cells. Biophys. J., 78, 2863-2877.
  6. Hettmann, C., Herm, A., Geiter, A., Frank, B., Schwarz, E., Soldati, T., and Soldati, D. (2000) A dibasic motif in the tail of a class XIV apicomplexan myosin is an essential determinant of plasma membrane localization. Mol. Biol. Cell 11, 1385-1400.
  7. Geissler, H., Ullmann, R., and Soldati, T. (2000) The tail domain of myosin M catalyses nucleotide exchange on Rac1-GTPases and can induce actin-driven surface protrusions. Traffic 1, 399-410.
  8. Schwarz, E.C., Neuhaus, E.M., Kistler, C., Henkel, A.W., and Soldati, T. (2000) Dictyostelium myosin IK is involved in the maintenance of cortical tension and affects motility and phagocytosis. J. Cell Sci., 113, 621-633.
  9. Bao, J., I. Alroy, H. Waterman, E. D. Schejter, C. Brodie, J. Gruenberg and Y. Yarden (2000). "Threonine phosphorylation diverts internalized epidermal growth factor receptors from a degradative pathway to the recycling endosome." J Biol Chem 275(34): 26178-86.
  10. Chevallier, J., N. Sakai, F. Robert, T. Kobayashi, J. Gruenberg and S. Matile (2000). "Rapid access to synthetic lysobisphosphatidic acids using P(III) chemistry." Org Lett 2(13): 1859-61.
  11. Gagescu, R., J. Gruenberg and E. Smythe (2000). "Membrane dynamics in endocytosis: structure—function relationship." Traffic 1(1): 84-8.
  12. Gagescu, R., N. Demaurex, R. G. Parton, W. Hunziker, L. A. Huber and J. Gruenberg (2000). "The recycling endosome of Madin-Darby canine kidney cells is a mildly acidic compartment rich in raft components." Mol Biol Cell 11(8): 2775-91.
  13. Galve-de Rochemonteix, B., T. Kobayashi, C. Rosnoblet, M. Lindsay, R. G. Parton, G. Reber, E. de Maistre, D. Wahl, E. K. Kruithof, J. Gruenberg and P. de Moerloose (2000). "Interaction of anti-phospholipid antibodies with late endosomes of human endothelial cells." Arterioscler Thromb Vasc Biol 20(2): 563-74.
  14. Huber, L. A., I. Fialka, K. Paiha, W. Hunziker, D. B. Sacks, M. Bahler, M. Way, R. Gagescu and J. Gruenberg (2000). "Both calmodulin and the unconventional myosin Myr4 regulate membrane trafficking along the recycling pathway of MDCK cells." Traffic 1(6): 494-503.
  15. Juuti-Uusitalo, K., K. J. Airenne, A. Laukkanen, E. L. Punnonen, V. M. Olkkonen, J. Gruenberg, M. Kulomaa and V. Marjomaki (2000). "Selective targeting of avidin/mannose 6-phosphate receptor chimeras to early or late endosomes." Eur J Cell Biol 79(7): 458-68.
  16. Kobayashi, T., U. M. Vischer, C. Rosnoblet, C. Lebrand, M. Lindsay, R. G. Parton, E. K. Kruithof and J. Gruenberg (2000). "The tetraspanin CD63/lamp3 cycles between endocytic and secretory compartments in human endothelial cells." Mol Biol Cell 11(5): 1829-43.
  17. Simons, K. and J. Gruenberg (2000). "Jamming the endosomal system: lipid rafts and lysosomal storage diseases." Trends Cell Biol 10(11): 459-62.
  18. Alpy, F., M. E. Stoeckel, A. Dierich, J. M. Escola, C. Wendling, M. P. Chenard, M. T. Vanier, J. Gruenberg, C. Tomasetto and M. C. Rio (2001). "The steroidogenic acute regulatory protein homolog MLN64, a late endosomal cholesterol-binding protein." J Biol Chem 276(6): 4261-9.
  19. González-Gaitán, M., and Jackle, H. (2000). Tip cell-derived RTK signaling initiates cell movements in the Drosophila stomatogastric nervous system anlage. EMBO Rep 1, 366-371
  20. Entchev, E.V., Schwabedissen, A., and González-Gaitán, M. (2000). Gradient formation of the TGF-beta homolog Dpp. Cell 103, 981-991
  21. Kaksonen M, Peng HB and Rauvala H. (2000) Association of cortactin with dynamic actin in lamellipodia and on endosomal vesicles. J. Cell Sci. 113: 4421-4426.
  22. Kilpelainen I, Kaksonen M, Avikainen H, Fath M, Linhardt RJ, Raulo E and Rauvala H. (2000) Heparin-binding growth-associated molecule contains two heparin-binding beta-sheet domains that are homologous to the thrombospondin type I repeat. J. Biol. Chem. 275: 13564-13570.
  23. Rauvala H, Huttunen HJ, Fages C, Kaksonen M, Kinnunen T, Imai S, Raulo E, Kilpelainen I. (2000) Heparin-binding proteins HB-GAM (pleiotrophin) and amphoterin in the regulation of cell motility. Matrix Biol. 19: 377-387.
  24. Lewis, M.J., B. J. Nichols, C. Prescianotto-Baschong, H. Riezman and H.R.B. Pelham (2000) Specific retrieval of the exocytic SNARE Snc1p from early yeast endosomes. Mol. Biol. Cell, 11, 23-38.
  25. Muñiz, M. and H. Riezman (2000) Intracellular transport of GPI-anchored proteins. EMBO J., 19, 10-15.
  26. Schärer-Brodbeck, C. and H. Riezman (2000) Saccharomyces cerevisiae Arc35p works through two genetically separable calmodulin functions to regulate the actin and tubulin cytoskeletons. J. Cell Sci., 113, 521-532.
  27. Schärer-Brodbeck, C. and H. Riezman (2000) Functional interactions between the p35 subunit of the Arp2/3 complex and calmodulin in yeast. Mol. Biol. Cell, 11, 1113-1127.
  28. Muñiz, M., C. Nuoffer, H.P. Hauri and H. Riezman (2000) The Emp24p complex recruits a specific cargo molecule into ER-derived vesicles. J. Cell Biol., 148, 925-930.
  29. Ohishi, K., N. Inoue, Y. Maeda, J. Takeda, H. Riezman, and T. Kinoshita (2000) Gaa1p and Gpi8p are components of a GPI transamidase that mediates attachment of glycosylphosphatidylinositol to proteins. Mol. Biol. Cell, 11, 1523- 1533.
  30. Wiederkehr, A., S. Avaro, C. Prescianotto-Baschong, R. Haguenauer-Tsapis and H. Riezman (2000) The F-box protein Rcy1p is involved in endocytic membrane traffic and recycling out of an early endosome in S. cerevisiae. J. Cell Biol., 149, 397-410.
  31. Zanolari, B., S. Friant, K. Funato, C. Sütterlin, B. J. Stevenson and H. Riezman (2000) Sphingoid base synthesis requirement for endocytosis in Saccharomyces cerevisiae. EMBO J., 19, 2824-2833.
  32. Friant, S., B. Zanolari and H. Riezman (2000) Increased protein kinase or decreased PP2A activity bypass sphingoid base requirement in endocytosis. EMBO J., 19, 2834-2844.
  33. Nagamune, K., T. Nozaki, Y. Maeda, K. Ohishi, T. Fukuma, T. Hara, R.T. Schwarz, C. Sütterlin, R. Brun, H. Riezman and T. Kinoshita (2000) Critical roles of glycosylphosphatidylinositol for Trypanosoma brucei. Proc. Nat. Acad. Sci. USA, 97, 10336-10341.
  34. D’Hondt, K., A. Heese-Peck and H. Riezman (2000) requirements for endocytosis Ann. Rev. Genet., 34, 255-295. Protein and lipid
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  36. Gagny B., A. Wiederkehr, P. Dumoulin, B. Winsor, H. Riezman, and R. Haguenauer-Tsapis (2000) A novel EH domain protein of Saccharomyces cerevisiae, Ede1p, involved in endocytosis. J. Cell Sci. 113, 3309-3319.
  37. Schärer-Brodbeck, C. and H. Riezman (2000) Interdependence of filamentous actin and microtubules for asymmetric cell division. Biol. Chem., 381, 815-825.

Before 2000

  1. Schwarz, E.C., Geissler, H., and Soldati, T. (1999) A potentially exhaustive screening strategy reveals two novel divergent myosins in Dictyostelium. Cell Biochem. Biophys. 30, 413-435.
  2. Ulbricht, B., and Soldati, T. (1999) Production of reagents and optimization of methods for studying calmodulin-binding proteins. Prot. Expr. Purif. 15, 24-33.
  3. Neuhaus, E.M., and Soldati, T. (1999) Molecular mechanisms of membrane trafficking - What do we learn from Dictyostelium discoideum ? Protist 150, 235-243.
  4. Soldati, T., Schwarz, E., and Geissler, H. (1999) Unconventional myosins at the crossroad of signal transduction and cytoskeleton remodeling. Protoplasma 209, 28-37.
  5. Soldati, T., Geissler, H., and Schwarz, E. (1999) How many is enough ? Exploring the myosin repertoire in the model eukaryote Dictyostelium discoideum. Cell Biochem. Biophys. 30, 389-411.
  6. Neuhaus, E., Horstmann, H., Almers, W., Maniak, M., and Soldati, T. (1998) Ethane-freezing/methanol-fixation of cell monolayers. A procedure for improved preservation of structure and antigenicity for light and electron microscopies. J. Struct. Biol. 121, 326-342.
  7. Monnat, J., Hacker, U., Geissler, H., Rauchenberger, R., Neuhaus, E., Maniak, M., and Soldati, T. (1997) Dictyostelium discoideum Protein Disulfide Isomerase, an endoplasmic reticulum resident enzyme lacking a KDEL-type retrieval signal. FEBS Lett., 418, 357-362.
  8. Lang, T., Wacker, I., Steyer, J., Kaether, C., Wunderlich, I., Soldati, T., Gerdes, H. and Almers, W. (1997) Ca2+ -triggered peptide secretion in single cells imaged with green fluorescent protein and evanescent-wave microscopy. Neuron 18, 857-863.
  9. Komiyama, M., Soldati, T., von Arx, P. and Perriard, J.-C. (1996) The sorting specificity of myosin alkali light chain isoproteins reflects the sequence of developmental expression as determined by double epitope-tagging competition. J. Cell Sci. 109, 2089-2099.
  10. Von Arx, P., Bantle, S., Soldati. T. and Perriard, J.-C. (1995) Dominant Negative Effect of Cytoplasmic Actin Isoproteins on Cardiomyocyte Cytoarchitecture and Function. J. Cell Biol. 131(6), 1759-1773.
  11. Riederer, M.A., Soldati, T., Dirac-Svejstrup, A.B., and Pfeffer, S.R. (1995) Expression of Rab9 protein in Escherichia coli, Purification and isoprenylation in vitro. Meth. Enzym. 257, 15-21.
  12. Soldati, T., Rancaño, C., Geissler, H. and Pfeffer, S.R. (1995) Rab7 and Rab9 are recruited onto late endosomes by biochemically distinguishable processes. J. Biol. Chem. 270(43), 25541-25548.
  13. Soldati, T., Shapiro, A.D. and Pfeffer, S.R. (1995) Reconstitution of Rab9 endosomal targeting and nucleotide exchange using purified Rab9-GDP Dissociation Inhibitor complexes and endosome-enriched membranes. Meth. Enzym. 257, 253-259.
  14. Pfeffer, S.R., Dirac-Svejstrup, A.B. and Soldati, T. (1995) Rab GDP Dissociation Inhibitor: putting Rab GTPases in the right place. J. Biol. Chem. 270(29), 17057-17059.
  15. Pfeffer, S.R., Soldati, T., Geißler, H., Rancaño, C. and Dirac-Svejstrup, A.B. (1995) Selective membrane recruitment of rab GTPases. In: Cold Spring Harbour Symp., Volume LX, 221-227
  16. Dirac-Svejstrup, A.B., Soldati, T., Shapiro, A.D. and Pfeffer, S.R. (1994) Rab-GDI presents functional rab9 protein to the intracellular transport machinery and contributes selectivity to rab9 membrane recruitment. J. Biol. Chem. 269(22), 15427-15430.
  17. Riederer, M.A., Soldati, T., Shapiro, A.D., Lin, J. and Pfeffer, S.R. (1994) Lysosome biogenesis requires rab9 function and receptor recycling from endosomes to the trans Golgi network. J. Cell Biol. 125(3), 573-582.
  18. Soldati, T., Shapiro, A.D., Dirac-Svejstrup, A.B. and Pfeffer, S.R. (1994) Membrane targeting of the small GTPase Rab9 is accompanied by nucleotide exchange. Nature 369, 76-78.
  19. Soldati, T., Riederer, M. A. and Pfeffer, S. R. (1993) Rab-GDI, a solubilizing and recycling factor for rab9 protein. Mol. Biol. Cell 4 (4), 425-434.
  20. Lombardi, D., Soldati, T., Riederer, M. A., Goda, Y., Zerial, M. and Pfeffer, S. R. (1993) Rab9 functions in transport between late endosomes and the trans Golgi network. EMBO J. 12 (2), 677-682.
  21. Goda, Y., Soldati, T. and Pfeffer, S. R. (1992) Transport from late endosomes to the trans Golgi network in semi intact cell extracts. Meth. Enzym., 219, 153-159.
  22. Perriard, J.-C., von Arx, P., Bantle, S., Eppenberger, H.M., Eppenberger-Eberhardt, M., Messerli, M. and Soldati, T. (1992) Molecular analysis of protein sorting during biogenesis of muscle cytoarchitecture. Symp. Soc. Exp. Biol., 46, 219-235
  23. Soldati, T. and Perriard, J.-C. (1991) Intracompartmental sorting of essential myosin light chains: molecular dissection and in vivo monitoring by epitope tagging. Cell 66, 277-289.
  24. Wirz, T., U. Brändle, Soldati,T., Hossle, J.P. and Perriard, J.-C. (1990) A unique chicken B-creatine kinase gene gives rise to two B-creatine kinase isoproteins with distinct N-termini by alternative splicing. J. Biol. Chem. 265, 11656-11666.
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  154. Wendland B, S.D. Emr and H. Riezman (1998) Protein traffic in the yeast endocytic and vacuolar protein sorting pathways. Curr. Opin. Cell Biol. 10, 513- 522
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