Publications

all

2018

  • (2018) Crossref OpenURL Resolver. .
  • (2018) . .
  • Lombardot, Thierry; Morgat, Anne; Axelsen, Kristian B; Aimo, Lucila; Hyka-Nouspikel, Nevila; Niknejad, Anne; Ignatchenko, Alex; Xenarios, Ioannis; Coudert, Elisabeth; Redaschi, Nicole; Bridge, Alan (2018) Updates in Rhea: SPARQLing biochemical reaction data. Nucleic Acids Res.. [accepted]
  • Wettmann, Lukas; Bonny, Mike; Kruse, Karsten (2018) Effects of geometry and topography on Min-protein dynamics. PLoS ONE 13 (8) e0203050.
  • Riggi, Margot; Niewola-Staszkowska, Karolina; Chiaruttini, Nicolas; Colom, Adai; Kusmider, Beata; Mercier, Vincent; Soleimanpour, Saeideh; Stahl, Michael; Matile, Stefan; Roux, Aurélien; Loewith, Robbie (2018) Decrease in Plasma Membrane Tension Triggers PtdIns(4,5)P2 Phase Separation to Inactivate TORC2. Nat. Cell. Biol. 20 (9) 1043-1051.
  • Colom, Adai; Derivery, Emmanuel; Soleimanpour, Saeideh; Tomba, Caterina; Dal Molin, Marta; Sakai, Naomi; González-Gaitán, Marcos; Matile, Stefan; Roux, Aurélien (2018) A Fluorescent Membrane Tension Probe. Nat. Chem. 10 (11) 1118-1125.
  • He, Cuiwen; Hu, Xuchen; Weston, Thomas A.; Jung, Rachel S.; Sandhu, Jaspreet; Huang, Song; Heizer, Patrick; Kim, Jason; Ellison, Rochelle; Xu, Jiake; Kilburn, Matthew; Bensinger, Steven J.; Riezman, Howard; Tontonoz, Peter; Fong, Loren G.; Jiang, Haibo; Young, Stephen G. (2018) Macrophages release plasma membrane-derived particles rich in accessible cholesterol. Proc. Natl. Acad. Sci. USA 115 (36) E8499-E8508.
  • Lee, Kyubum; Famiglietti, Maria Livia; McMahon, Aoife; Wei, Chih-Hsuan; MacArthur, Jacqueline Ann Langdon; Poux, Sylvain; Breuza, Lionel; Bridge, Alan; Cunningham, Fiona; Xenarios, Ioannis; Lu, Zhiyong; Xu, Rong (2018) Scaling up data curation using deep learning: An application to literature triage in genomic variation resources. PLoS Comput. Biol. 14 (8) e1006390.
  • Daeden, Alicia Gonzalez-Gaitan, Marcos (2018) Endosomal Trafficking During Mitosis and Notch-Dependent Asymmetric Division. Endocytosis and Signaling vol. 57Ed. Lamaze, Christophe Prior, IanProgress in Molecular and Subcellular Biology. Springer, Cham. 301-329.
  • Sattler, Natascha; Bosmani, Cristina; Barisch, Caroline; Guého, Aurélie; Gopaldass, Navin; Dias, Marco; Leuba, Florence; Bruckert, Franz; Cosson, Pierre; Soldati, Thierry (2018) Functions of the Dictyostelium LIMP-2/CD36 homologues in bacteria uptake, phagolysosome biogenesis and host cell defence.. J. Cell Sci. 131 jcs218040.
  • Mund, Markus; van der Beek, Johannes Albertus; Deschamps, Joran; Dmitrieff, Serge; Hoess, Philipp; Monster, Jooske Louise; Picco, Andrea; Nédélec, François; Kaksonen, Marko; Ries, Jonas (2018) Systematic Nanoscale Analysis of Endocytosis Links Efficient Vesicle Formation to Patterned Actin Nucleation. Cell 174 (4) 884-896.e17.
  • Kreten, F. H.; Hoffmann, Ch.; Riveline, D.; Kruse, Karsten (2018) Active bundles of polar and bipolar filaments. Phys. Rev. E 110 (1) 012413.
  • Picco, Andrea; Kaksonen, Marko (2018) Quantitative imaging of clathrin-​mediated endocytosis. Curr. Opin. Cell Biol. 53 105-110.
  • Ideses, Y.; Erukhimovitch, V.; Brand, R.; Jourdain, D.; Hernandez, J. Salmeron; Gabinet, U. R.; Safran, S. A.; Kruse, Karsten; Bernheim-Groswasser, A. (2018) Spontaneous buckling of contractile poroelastic actomyosin sheets. Nat. Commun. 9 (1) 2461.
  • Melero, Alejandro; Chiaruttini, Nicolas; Karashima, Takefumi; Riezman, Isabelle; Funato, Kouichi; Barlowe, Charles; Riezman, Howard; Roux, Aurélien (2018) Lysophospholipids Facilitate COPII Vesicle Formation. Curr. Biol. 28 (12) 1950-1958.e6.
  • Picco, Andrea; Kukulski, Wanda; Manenschijn, Hetty E.; Specht, Tanja; Briggs, John A. G.; Kaksonen, Marko; Lemmon, Sandra (2018) The contributions of the actin machinery to endocytic membrane bending and vesicle formation. Mol. Biol. Cell 29 (11) 1346-1358.
  • Picco, Andrea; Kukulski, Wanda; Manenschijn, Hetty E.; Specht, Tanja; Briggs, John A. G.; Kaksonen, Marko (2018) The contributions of the actin machinery to endocytic membrane bending and vesicle formation. Mol. Biol. Cell 29 (11) 1346-1358.
  • Bauer, G.; Fakhri, N.; Kicheva, A.; Kondev, J.; Kruse, Kartsen; Noji, H.; Riveline, Daniel; Saunders, T. E.; Thattai, M.; Wieschaus, E. (2018) The Science of Living Matter for Tomorrow. Cell Syst. 6 (4) 400-402.
  • Aguilar Hidalgo, Daniel; Werner, Steffen; Wartlick, Ortrud; González-Gaitán, Marcos; Friedrich, Benjamin; Jülicher, Frank (2018) Critical Point in Self-Organized Tissue Growth. Phys. Rev. Lett. 120 198102.
  • Perrin, Laurent; Loizides-Mangold, Ursula; Chanon, Stéphanie; Gobet, Cédric; Hulo, Nicolas; Isenegger, Laura; Weger, Benjamin D.; Migliavacca, Eugenia; Charpagne, Aline; Betts, James A.; Walhin, Jean-Philippe; Templeman, Iain; Stokes, Keith; Thompson, Dylan; Tsintzas, Kostas; Robert, Maud; Howald, Cedric; Riezman, Howard; Feige, Jerome N.; Karagounis, Leonidas G.; Johnston, Jonathan D.; Dermitzakis, Emmanouil T.; Gachon, Frédéric; Lefai, Etienne; Dibner, Charna (2018) Transcriptomic analyses reveal rhythmic and CLOCK-driven pathways in human skeletal muscle. eLife 7 e34114.
  • Wettmann, Lukas; Kruse, Karsten (2018) The Min-protein oscillations in Escherichia coli: an example of self-organized cellular protein waves. Philos. Trans. R. Soc., B 373 (1747) 20170111.
  • Kruse, Karsten; Sugihara, Kaori (2018) 2018 International Symposium on Chemical Biology of the NCCR Chemical Biology Campus Biotech, Geneva 10.–12.01.2018. CHIMIA 72 (3) 160-164.
  • Dhakshinamoorthy, Ranjani; Bitzhenner, Moritz; Cosson, Pierre; Soldati, Thierry; Leippe, Matthias (2018) The Saposin-Like Protein AplD Displays Pore-Forming Activity and Participates in Defense Against Bacterial Infection During a Multicellular Stage of Dictyostelium discoideum. Front. Cell. Infect. Microbiol. 8 art. 73.
  • Trofimov, Valentin; Kicka, Sébastien; Mucaria, Sabrina; Hanna, Nabil; Ramon-Olayo, Fernando; Del Peral, Laura Vela-Gonzalez; Lelièvre, Joël; Ballell, Lluís; Scapozza, Leonardo; Besra, Gurdyal S.; Cox, Jonathan A. G.; Soldati, Thierry (2018) Antimycobacterial drug discovery using Mycobacteria-infected amoebae identifies anti-infectives and new molecular targets. Sci. Rep. 983 (Suppl 1) 403.
  • Trofimov, Valentin; Kicka, Sébastien; Mucaria, Sabrina; Hanna, Nabil; Ramon-Olayo, Fernando; Del Peral, Laura Vela-Gonzalez; Lelièvre, Joël; Ballell, Lluís; Scapozza, Leonardo; Besra, Gurdyal S.; Cox, Jonathan A. G.; Soldati, Thierry (2018) Antimycobacterial drug discovery using Mycobacteria-infected amoebae identifies anti-infectives and new molecular targets. Sci. Rep. 983 (Suppl 1) art. 3939.
  • Castillon, Guillaume A.; Burriat-Couleru, Patricia; Abegg, Daniel; Criado Santos, Nina; Watanabe, Reika (2018) Clathrin and AP1 are required for apical sorting of glycosyl phosphatidyl inositol-anchored proteins in biosynthetic and recycling routes in Madin-Darby canine kidney cells. Traffic 19 (3) 215-228.
  • Kruse, Karsten; Chiaruttini, Nicolas; Roux, Aurélien (2018) Optical control of cytoplasmic flows. Nat. Cell Biol. 20 227-228.
  • Harayama, Takeshi; Riezman, Howard (2018) Understanding the diversity of membrane lipid composition. Nat. Rev. Mol. Cell Biol. 19 281-296.
  • Kaksonen, Marko; Roux, Aurélien (2018) Mechanisms of clathrin-mediated endocytosis. Nat. Rev. Mol. Cell Biol. 19 313-326.
  • Feng, Suihan; Harayama, Takeshi; Montessuit, Sylvie; David, Fabrice P. A.; Winssinger, Nicolas; Martinou, Jean-Claude; Riezman, Howard (2018) Mitochondria-specific photoactivation to monitor local sphingosine metabolism and function. eLife 7 e34555.
  • Zhou, Xiao; Friedmann, Kim S.; Lyrmann, Hélène; Zhou, Yan; Schoppmeyer, Rouven; Knörck, Arne; Mang, Sebastian; Hoxha, Cora; Angenendt, Adrian; Backes, Christian S.; Mangerich, Carmen; Zhao, Renping; Cappello, Sabrina; Schwär, Gertrud; Hässig, Carmen; Neef, Marc; Bufe, Bernd; Zufall, Frank; Kruse, Karsten; Niemeyer, Barbara A.; Lis, Annette; Qu, Bin; Kummerow, Carsten; Schwarz, Eva C.; Hoth, Markus (2018) A calcium optimum for cytotoxic T lymphocyte and natural killer cell cytotoxicity. J. Physiol. 596 (14) 2681-2698.
  • Garcia-Alai, Maria M.; Heidemann, Johannes; Skruzny, Michal; Gieras, Anna; Mertens, Haydyn D. T.; Svergun, Dmitri I.; Kaksonen, Marko; Uetrecht, Charlotte; Meijers, Rob (2018) Epsin and Sla2 form assemblies through phospholipid interfaces. Nat. Commun. 9 (1) 328.
  • Cardenal-Muñoz, Elena; Barisch, Caroline; Lefrançois, Louise H.; López-Jiménez, Ana T.; Soldati, Thierry (2018) When Dicty Met Myco, a (Not So) Romantic Story about One Amoeba and Its Intracellular Pathogen. Front. Cell. Infect. Microbiol. 2 art. 529.
  • Tanasescu, Radu; Mettal, Ute; Colom, Adai; Roux, Aurélien; Zumbuehl, Andreas (2018) Facile and Rapid Formation of Giant Vesicles from Glass Beads. Polymers 10 (1) 54/1-54/11.
  • Dunn, Joe Dan; Bosmani, Cristina; Barisch, Caroline; Raykov, Lyudmil; Lefrançois, Louise H.; Cardenal-Muñoz, Elena; López-Jiménez, Ana Teresa; Soldati, Thierry (2018) Eat Prey, Live: Dictyostelium discoideum As a Model for Cell-Autonomous Defenses. Front. Immunol. 8 art. 1906.
  • Diop, ElHadji Assane; Queiroz, Emerson Ferreira; Kicka, Sébastien; Rudaz, Serge; Diop, Tahir; Soldati, Thierry; Wolfender, Jean-Luc (2018) Survey on medicinal plants traditionally used in Senegal for the treatment of tuberculosis (TB) and assessment of their antimycobacterial activity. J. Ethnopharmacol. 216 71-78.
  • Kawano, Shin; Tamura, Yasushi; Kojima, Rieko; Bala, Siqin; Asai, Eri; Michel, Agnès H.; Kornmann, Benoît; Riezman, Isabelle; Riezman, Howard; Sakae, Yoshitake; Okamoto, Yuko; Endo, Toshiya (2018) Structure–function insights into direct lipid transfer between membranes by Mmm1–Mdm12 of ERMES. J. Cell Biol. 217 (3) 959-974.
  • Nicolussi, Andrea; Dunn, Joe Dan; Mlynek, Georg; Bellei, Marzia; Zamocky, Marcel; Battistuzzi, Gianantonio; Djinović-Carugo, Kristina; Furtmüller, Paul G.; Soldati, Thierry; Obinger, Christian (2018) Secreted heme peroxidase from Dictyostelium discoideum: Insights into catalysis, structure, and biological role. J. Biol. Chem. 293 (4) 1330-1345.
  • Egea, Javier; Fabregat, I.; Frapart, Y.M.; Ghezzi, P.; Görlach, A.; Kietzmann, T.; Kubaichuk, K.; Knaus, U.G.; Lopez, M.G.; Olaso-Gonzalez, G.; Petry, A.; Schulz, R.; Vina, J.; Winyard, P.; Abbas, K.; Ademowo, O.S.; Afonso, C.B.; Andreadou, I.; Antelmann, H.; Antunes, F.; Aslan, M.; Bachschmid, M.M.; Barbosa, R.M.; Belousov, V.; Berndt, C.; Bernlohr, D.; Bertrán, E.; Bindoli, A.; Bottari, S.P.; Brito, P.M.; Carrara, G.; Casas, A.I.; Chatzi, A.; Chondrogianni, N.; Conrad, M.; Cooke, M.S.; Costa, J.G.; Cuadrado, A.; My-Chan Dang, P.; De Smet, B.; Debelec-Butuner, B.; Dias, I.H.K.; Dunn, J.D.; Edson, A.J.; El Assar, M.; El-Benna, J.; Ferdinandy, P.; Fernandes, A.S.; Fladmark, K.E.; Förstermann, U.; Giniatullin, R.; Giricz, Z.; Görbe, A.; Griffiths, H.; Hampl, V.; Hanf, A.; Herget, J.; Hernansanz-Agustín, P.; Hillion, M.; Huang, J.; Ilikay, S.; Jansen-Dürr, P.; Jaquet, V.; Joles, J.A.; Kalyanaraman, B.; Kaminskyy, D.; Karbaschi, M.; Kleanthous, M.; Klotz, L.O.; Korac, B.; Korkmaz, K.S.; Koziel, R.; Kračun, D.; Krause, K.H.; Křen, V.; Krieg, T.; Laranjinha, J.; Lazou, A.; Li, H.; Martínez-Ruiz, A.; Matsui, R.; McBean, G.J.; Meredith, S.P.; Messens, J.; Miguel, V.; Mikhed, Y.; Milisav, I.; Milković, L.; Miranda-Vizuete, A.; Mojović, M.; Monsalve, M.; Mouthuy, P.A.; Mulvey, J.; Münzel, T.; Muzykantov, V.; Nguyen, I.T.N.; Oelze, M.; Oliveira, N.G.; Palmeira, C.M.; Papaevgeniou, N.; Pavićević, A.; Pedre, B.; Peyrot, F.; Phylactides, M.; Pircalabioru, G.G.; Pitt, A.R.; Poulsen, H.E.; Prieto, I.; Rigobello, M.P.; Robledinos-Antón, N.; Rodríguez-Mañas, L.; Rolo, A.P.; Rousset, F.; Ruskovska, T.; Saraiva, N.; Sasson, S.; Schröder, Katrin; Semen, Khrystyna; Seredenina, Tamara; Shakirzyanova, Anastasia; Smith, Geoffrey L.; Soldati, Thierry; Sousa, Bebiana C.; Spickett, Corinne M.; Stancic, Ana; Stasia, Marie José; Steinbrenner, Holger; Stepanić, Višnja; Steven, Sebastian; Tokatlidis, Kostas; Tuncay, Erkan; Turan, Belma; Ursini, Fulvio; Vacek, Jan; Vajnerova, Olga; Valentová, Kateřina; Van Breusegem, Frank; Varisli, Lokman; Veal, Elizabeth A.; Yalçın, A. Suha; Yelisyeyeva, Olha; Žarković, Neven; Zatloukalová, Martina; Zielonka, Jacek; Touyz, Rhian M.; Papapetropoulos, Andreas; Grune, Tilman; Lamas, Santiago; Schmidt, Harald H. H. W.; Di Lisa, Fabio; Daiber, Andreas (2018) Corrigendum to “European contribution to the study of ROS: A summary of the findings and prospects for the future from the COST action BM1203 (EU-ROS)”  [Redox Biol. 13 (2017) 94–162]. Redox Biol. 14 694-696.
  • Shinde, Abhijit Babaji; Baboota, Ritesh Kumar; Denis, Simone; Loizides-Mangold, Ursula; Peeters, Annelies; Espeel, Marc; Malheiro, Ana Rita; Riezman, Howard; Vinckier, Stefan; Vaz, Frédéric M.; Brites, Pedro; Ferdinandusse, Sacha; Van Veldhoven, Paul P.; Baes, Myriam (2018) Mitochondrial disruption in peroxisome deficient cells is hepatocyte selective but is not mediated by common hepatic peroxisomal metabolites. Mitochondrion 39 51-59.
  • Merzouki, Aziza; Malaspinas, Orestis; Trushko, Anastasiya; Roux, Aurélien; Chopard, Bastien (2018) Influence of cell mechanics and proliferation on the buckling of simulated tissues using a vertex model. Nat. Comput. 17 (3) 511-519.

2017

  • Guri, Yakir; Colombi, Marco; Dazert, Eva; Hindupur, Sravanth K.; Roszik, Jason; Moes, Suzette; Jenoe, Paul; Heim, Markus H.; Riezman, Isabelle; Riezman, Howard; Hall, Michael N. (2017) mTORC2 Promotes Tumorigenesis via Lipid Synthesis. Cancer Cell 32 (6) 807-823.e12.
  • Liechti, Robin; George, Nancy; Götz, Lou; El-Gebali, Sara; Chasapi, Anastasia; Crespo, Isaac; Xenarios, Ioannis; Lemberger, Thomas (2017) SourceData: a semantic platform for curating and searching figures. Nat. Methods 14 (11) 1021-1022.
  • Gopaldass, Navin; Fauvet, Bruno; Lashuel, Hilal; Roux, Aurélien; Mayer, Andreas (2017) Membrane scission driven by the PROPPIN Atg18. EMBO J. 36 (22) 3097-3267.
  • Galli, Valentina; Sebastian, Rafael; Moutel, Sandrine; Ecard, Jason; Perez, Franck; Roux, Aurélien (2017) Uncoupling of dynamin polymerization and GTPase activity revealed by the conformation-specific nanobody dynab. eLife 23 3483.
  • Loizides-Mangold, Ursula; Perrin, Laurent; Vandereycken, Bart; Betts, James A.; Walhin, Jean-Philippe; Templeman, Iain; Chanon, Stéphanie; Weger, Benjamin D.; Durand, Christine; Robert, Maud; Paz Montoya, Jonathan; Moniatte, Marc; Karagounis, Leonidas G.; Johnston, Jonathan D.; Gachon, Frédéric; Lefai, Etienne; Riezman, Howard; Dibner, Charna (2017) Lipidomics reveals diurnal lipid oscillations in human skeletal muscle persisting in cellular myotubes cultured in vitro. Proc. Natl. Acad. Sci. USA 114 (41) E8565-E8574.
  • Hohendahl, Annika; Talledge, Nathaniel; Galli, Valentina; Shen, Peter S; Humbert, Frédéric; De Camilli, Pietro; Frost, Adam; Roux, Aurélien (2017) Structural inhibition of dynamin-mediated membrane fission by endophilin. eLife 14 331.
  • Mueller, Jan; Szep, Gregory; Nemethova, Maria; de Vries, Ingrid; Lieber, Arnon D.; Winkler, Christoph; Kruse, Karsten; Small, J. Victor; Schmeiser, Christian; Keren, Kinneret; Hauschild, Robert; Sixt, Michael (2017) Load Adaptation of Lamellipodial Actin Networks. Cell 171 (1) 188-200.e16.
  • Muriel, Olivia; Scott, Cameron Christopher; Larios, Jorge; Mercier, Vicent; Gruenberg, Jean (2017) In Vitro Polymerization of F-actin on Early Endosomes. J. Visualized Exp. (126) e55829.
  • Dewhurst-Maridor, Gisèle; Abegg, Daniel; David, Fabrice P.A.; Rougemont, Jacques; Scott, Cameron C.; Adibekian, Alexander; Riezman, Howard; Drubin, David G. (2017) The SAGA complex, together with transcription factors and the endocytic protein Rvs167p, coordinate the reprofiling of gene expression in response to changes in sterol composition in Saccharomyces cerevisiae. Mol. Biol. Cell 28 (20) 2637-2649.
  • Repnik, Urska; Borg Distefano, Marita; Speth, Martin Tobias; Ng, Matthew Yoke Wui; Progida, Cinzia; Hoflack, Bernard; Gruenberg, Jean; Griffiths, Gareth (2017) L-leucyl-L-leucine methyl ester does not release cysteine cathepsins to the cytosol but inactivates them in transiently permeabilized lysosomes. J. Cell Sci. 79 (18) 3124-3140.
  • Derivery, Emmanuel; Bartolami, Eline; Matile, Stefan; Gonzalez-Gaitan, Marcos (2017) Efficient Delivery of Quantum Dots into the Cytosol of Cells Using Cell-Penetrating Poly(disulfide)s. J. Am. Chem. Soc. 139 (30) 10172-10175.
  • Sarkar, Namrata; Schmid-Siegert, Emanuel; Iseli, Christian; Calderon, Sandra; Gouhier-Darimont, Caroline; Chrast, Jacqueline; Cattaneo, Pietro; Schütz, Frédéric; Farinelli, Laurent; Pagni, Marco; Schneider, Michel; Voumard, Jérémie; Jaboyedoff, Michel; Fankhauser, Christian; Hardtke, Christian S.; Keller, Laurent; Pannell, John R.; Reymond, Alexandre; Robinson-Rechavi, Marc; Xenarios, Ioannis; Reymond, Philippe (2017) Low number of fixed somatic mutations in a long-lived oak tree. Nat. Plants 3 (12) 926-928.
  • Ouertatani-Sakouhi, Hajer; Kicka, Sébastien; Chiriano, Gianpaolo; Harrison, Christopher F.; Hilbi, Hubert; Scapozza, Leonardo; Soldati, Thierry; Cosson, Pierre; Neyrolles, Olivier (2017) Inhibitors of Mycobacterium marinum virulence identified in a Dictyostelium discoideum host model. PLoS ONE 12 (7) e0181121.
  • Chiaruttini, Nicolas; Roux, Aurélien (2017) Dynamic and elastic shape transitions in curved ESCRT-III filaments. Curr. Opin. Cell Biol. 47 126-135.
  • Guerreiro, Joana F.; Mira, Nuno P.; Santos, Aline X. S.; Riezman, Howard; Sá-Correia, Isabel (2017) Membrane Phosphoproteomics of Yeast Early Response to Acetic Acid: Role of Hrk1 Kinase and Lipid Biosynthetic Pathways, in Particular Sphingolipids. Front. Microbiol. 8 01302.
  • Tiedje, D.; Quer, O.; Breil, B.; Schrader, A. J.; Bothe, C.; Kruse, Karsten; Bögemann, M.; Donner-Banzhoff, N.; Semjonow, A. (2017) Anwendung der S3-Leitlinie zur Prostatakrebsfrüherkennung in urologischen Praxen. Urologe 19 (7) 349-916.
  • Dorsaz, Stéphane; Snäka, Tiia; Favre-Godal, Quentin; Maudens, Pierre; Boulens, Nathalie; Furrer, Pascal; Ebrahimi, Samad Nejad; Hamburger, Matthias; Allémann, Eric; Gindro, Katia; Queiroz, Emerson Ferreira; Riezman, Howard; Wolfender, Jean-Luc; Sanglard, Dominique (2017) Identification and mode of action of a plant natural product targeting human fungal pathogens. Antimicrob. Agents Chemother. 61 e00829-17.
  • Domínguez-Martín, Eunice; Cardenal-Muñoz, Elena; King, Jason; Soldati, Thierry; Coria, Roberto; Escalante, Ricardo (2017) Methods to Monitor and Quantify Autophagy in the Social Amoeba Dictyostelium discoideum. Cells 6 (3) 18.
  • Riveline, Daniel; Kruse, Karsten (2017) Interface between Physics and Biology: Training a New Generation of Creative Bilingual Scientists. Trends Cell Biol. 27 (8) 541-543.
  • Michaud, Olivier; Fiorucci, Anne-Sophie; Xenarios, Ioannis; Fankhauser, Christian (2017) Local auxin production underlies a spatially restricted neighbor-detection response in. Proc. Natl. Acad. Sci. USA 114 (28) 7444-7449.
  • Shydlovskyi, Sergii; Zienert, Anke Y.; Ince, Semra; Dovengerds, Christine; Hohendahl, Annika; Dargazanli, Julia M.; Blum, Ailisa; Günther, Saskia D.; Kladt, Nikolay; Stürzl, Michael; Schauss, Astrid C.; Kutsch, Miriam; Roux, Aurélien; Praefcke, Gerrit J. K.; Herrmann, Christian (2017) Nucleotide-dependent farnesyl switch orchestrates polymerization and membrane binding of human guanylate-binding protein 1. Proc. Natl. Acad. Sci. U.S.A 114 (28) E5559-E5568.
  • Martín-Campos, Trinidad; Mylonas, Roman; Masselot, Alexandre; Waridel, Patrice; Petricevic, Tanja; Xenarios, Ioannis; Quadroni, Manfredo (2017) MsViz: A Graphical Software Tool for In-Depth Manual Validation and Quantitation of Post-translational Modifications. J. Proteome Res. 16 (8) 3092-3101.
  • Roux, Aurélien; Loewith, Robbie (2017) Tensing Up for Lipid Droplet Formation. Dev. Cell 41 (6) 571-572.
  • Mierzwa, Beata E.; Chiaruttini, Nicolas; Redondo-Morata, Lorena; Moser von Filseck, Joachim; König, Julia; Larios, Jorge; Poser, Ina; Müller-Reichert, Thomas; Scheuring, Simon; Roux, Aurélien; Gerlich, Daniel W. (2017) Dynamic subunit turnover in ESCRT-III assemblies is regulated by Vps4 to mediate membrane remodelling during cytokinesis. Nat. Cell Biol. 19 (7) 787-798.
  • Harayama, Takeshi; Riezman, Howard (2017) Detection of genome-edited mutant clones by a simple competition-based PCR method. PLoS ONE 12 (6) e0179165.
  • Loubéry, Sylvain; Daeden, Alicia; Seum, Carole; Holtzer, Laurent; Moraleda, Ana; Damond, Nicolas; Derivery, Emmanuel; Schmidt, Thomas; Gonzalez-Gaitan, Marcos (2017) Sara phosphorylation state controls the dispatch of endosomes from the central spindle during asymmetric division. Nat. Commun. 8 15285.
  • Barisch, Caroline; Soldati, Thierry (2017) Breaking fat! How mycobacteria and other intracellular pathogens manipulate host lipid droplets. Biochimie 141 54-61.
  • Hulo, Chantal; Masson, Patrick; Toussaint, Ariane; Osumi-Sutherland, David; de Castro, Edouard; Auchincloss, Andrea; Poux, Sylvain; Bougueleret, Lydie; Xenarios, Ioannis; Le Mercier, Philippe (2017) Bacterial Virus Ontology; Coordinating across Databases. Viruses 2 (6) 1521.
  • Zala, Diana; Schlattner, Uwe; Desvignes, Thomas; Bobe, Julien; Roux, Aurélien; Chavrier, Philippe; Boissan, Mathieu (2017) The advantage of channeling nucleotides for very processive functions. F1000Res. 6 724.
  • Egea, Javier; Fabregat, Isabel; Frapart, Yves M.; Ghezzi, Pietro; Görlach, Agnes; Kietzmann, Thomas; Kubaichuk, Kateryna; Knaus, Ulla G.; Lopez, Manuela G.; Olaso-Gonzalez, Gloria; Petry, Andreas; Schulz, Rainer; Vina, Jose; Winyard, Paul; Abbas, Kahina; Ademowo, Opeyemi S.; Afonso, Catarina B.; Andreadou, Ioanna; Antelmann, Haike; Antunes, Fernando; Aslan, Mutay; Bachschmid, Markus M.; Barbosa, Rui M.; Belousov, Vsevolod; Berndt, Carsten; Bernlohr, David; Bertrán, Esther; Bindoli, Alberto; Bottari, Serge P.; Brito, Paula M.; Carrara, Guia; Casas, Ana I.; Chatzi, Afroditi; Chondrogianni, Niki; Conrad, Marcus; Cooke, Marcus S.; Costa, João G.; Cuadrado, Antonio; My-Chan Dang, Pham; De Smet, Barbara; Debelec-Butuner, Bilge; Dias, Irundika H.K.; Dunn, Joe Dan; Edson, Amanda J.; El Assar, Mariam; El-Benna, Jamel; Ferdinandy, Péter; Fernandes, Ana S.; Fladmark, Kari E.; Förstermann, Ulrich; Giniatullin, Rashid; Giricz, Zoltán; Görbe, Anikó; Griffiths, Helen; Hampl, Vaclav; Hanf, Alina; Herget, Jan; Hernansanz-Agustín, Pablo; Hillion, Melanie; Huang, Jingjing; Ilikay, Serap; Jansen-Dürr, Pidder; Jaquet, Vincent; Joles, Jaap A.; Kalyanaraman, Balaraman; Kaminskyy, Danylo; Karbaschi, Mahsa; Kleanthous, Marina; Klotz, Lars-Oliver; Korac, Bato; Korkmaz, Kemal Sami; Koziel, Rafal; Kračun, Damir; Krause, Karl-Heinz; Křen, Vladimír; Krieg, Thomas; Laranjinha, João; Lazou, Antigone; Li, Huige; Martínez-Ruiz, Antonio; Matsui, Reiko; McBean, Gethin J.; Meredith, Stuart P.; Messens, Joris; Miguel, Verónica; Mikhed, Yuliya; Milisav, Irina; Milković, Lidija; Miranda-Vizuete, Antonio; Mojović, Miloš; Monsalve, María; Mouthuy, Pierre-Alexis; Mulvey, John; Münzel, Thomas; Muzykantov, Vladimir; Nguyen, Isabel T.N.; Oelze, Matthias; Oliveira, Nuno G.; Palmeira, Carlos M.; Papaevgeniou, Nikoletta; Pavićević, Aleksandra; Pedre, Brandán; Peyrot, Fabienne; Phylactides, Marios; Pircalabioru, Gratiela G.; Pitt, Andrew R.; Poulsen, Henrik E.; Prieto, Ignacio; Rigobello, Maria Pia; Robledinos-Antón, Natalia; Rodríguez-Mañas, Leocadio; Rolo, Anabela P.; Rousset, Francis; Ruskovska, Tatjana; Saraiva, Nuno; Sasson, Shlomo; Schröder, Katrin; Semen, Khrystyna; Seredenina, Tamara; Shakirzyanova, Anastasia; Smith, Geoffrey L.; Soldati, Thierry; Sousa, Bebiana C.; Spickett, Corinne M.; Stancic, Ana; Stasia, Marie José; Steinbrenner, Holger; Stepanić, Višnja; Steven, Sebastian; Tokatlidis, Kostas; Tuncay, Erkan; Turan, Belma; Ursini, Fulvio; Vacek, Jan; Vajnerova, Olga; Valentová, Kateřina; Van Breusegem, Frank; Varisli, Lokman; Veal, Elizabeth A.; Yalçin, A. Suha; Yelisyeyeva, Olha; Žarković, Neven; Zatloukalová, Martina; Zielonka, Jacek; Touyz, Rhian M.; Papapetropoulos, Andreas; Grune, Tilman; Lamas, Santiago; Schmidt, Harald H.H.W.; Di Lisa, Fabio; Daiber, Andreas (2017) European contribution to the study of ROS: A summary of the findings and prospects for the future from the COST action BM1203 (EU-ROS). Redox Biol. 13 94-162.
  • Zala, Diana; Schlattner, Uwe; Desvignes, Thomas; Bobe, Julien; Roux, Aurélien; Chavrier, Philippe; Boissan, Mathieu (2017) The advantage of channeling nucleotides for very processive functions [version 2]. F1000Research 6 724.
  • Capasso, Serena; Sticco, Lucia; Rizzo, Riccardo; Pirozzi, Marinella; Russo, Domenico; Dathan, Nina A; Campelo, Felix; van Galen, Josse; Hölttä-Vuori, Maarit; Turacchio, Gabriele; Hausser, Angelika; Malhotra, Vivek; Riezman, Isabelle; Riezman, Howard; Ikonen, Elina; Luberto, Chiara; Parashuraman, Seetharaman; Luini, Alberto; D\'Angelo, Giovanni (2017) Sphingolipid metabolic flow controls phosphoinositide turnover at the trans‐Golgi network. EMBO J. 36 (12) 1736-1754.
  • Colom, Adai; Redondo-Morata, Lorena; Chiaruttini, Nicolas; Roux, Aurélien; Scheuring, Simon (2017) Dynamic remodeling of the dynamin helix during membrane constriction. Proc. Natl. Acad. Sci. USA 114 (21) 5449-5454.
  • Daumke, Oliver; Roux, Aurélien (2017) Mitochondrial Homeostasis: How Do Dimers of Mitofusins Mediate Mitochondrial Fusion?. Curr. Biol. 27 (9) R353-R356.
  • Randazzo, Giuseppe Marco; Tonoli, David; Strajhar, Petra; Xenarios, Ioannis; Odermatt, Alex; Boccard, Julien; Rudaz, Serge (2017) Enhanced metabolite annotation via dynamic retention time prediction: Steroidogenesis alterations as a case study. J. Chromatogr. B 1071 11-18.
  • Cardenal-Muñoz, Elena; Arafah, Sonia; López-Jiménez, Ana Teresa; Kicka, Sébastien; Falaise, Alexandra; Bach, Frauke; Schaad, Olivier; King, Jason S.; Hagedorn, Monica; Soldati, Thierry; Lewinsohn, David M. (2017) Mycobacterium marinum antagonistically induces an autophagic response while repressing the autophagic flux in a TORC1- and ESX-1-dependent manner. PLoS Pathog. 13 (4) e1006344.
  • Sobel, Jonathan Aryeh; Krier, Irina; Andersin, Teemu; Raghav, Sunil; Canella, Donatella; Gilardi, Federica; Kalantzi, Alexandra Styliani; Rey, Guillaume; Weger, Benjamin; Gachon, Frédéric; Dal Peraro, Matteo; Hernandez, Nouria; Schibler, Ueli; Deplancke, Bart; Naef, Felix; Kramer, Achim (2017) Transcriptional regulatory logic of the diurnal cycle in the mouse liver. PLoS Biol. 26 (4) e2001069.
  • Hui, Xin; Sauer, Benjamin; Kaestner, Lars; Kruse, Karsten; Lipp, Peter (2017) PKCα diffusion and translocation are independent of an intact cytoskeleton. Sci. Rep. 7 art. num. 475.
  • Mange, François; Praz, Viviane; Migliavacca, Eugenia; Willis, Ian M.; Schütz, Frédéric; Hernandez, Nouria; Hernandez, Nouria; Delorenzi, Mauro; Deplancke, Bart; Desvergne, Béatrice; Guex, Nicolas; Herr, Winship; Naef, Felix; Rougemont, Jacques; Schibler, Ueli; Andersin, Teemu; Cousin, Pascal; Gilardi, Federica; Lammers, Fabienne; Mange, François; Villeneuve, Dominic; David, Fabrice; Fabbretti, Roberto; Jacquet, Philippe; Krier, Irina; Kuznetsov, Dmitry; Leleu, Marion; Liechti, Robin; Martin, Olivier; Migliavacca, Eugenia; Naldi, Aurélien; Praz, Viviane; Rib, Leonor; Sobel, Jonathan; Vlegel, Volker; Xenarios, Ioannis (2017) Diurnal regulation of RNA polymerase III transcription is under the control of both the feeding–fasting response and the circadian clock. Genome Res. 27 973-984.
  • Turrini, Riccardo; Pabois, Angélique; Xenarios, Ioannis; Coukos, George; Delaloye, Jean-François; Doucey, Marie-Agnès (2017) TIE-2 expressing monocytes in human cancers. OncoImmunology 6 (4) e1303585.
  • Hannich, J. Thomas; Mellal, Denia; Feng, Suihan; Zumbuehl, Andreas; Riezman, Howard (2017) Structure and conserved function of iso-branched sphingoid bases from the nematode Caenorhabditis elegans. Chem. Sci. 8 (5) 3676-3686.
  • Wigger, Leonore; Cruciani-Guglielmacci, Céline; Nicolas, Anthony; Denom, Jessica; Fernandez, Neïké; Fumeron, Frédéric; Marques-Vidal, Pedro; Ktorza, Alain; Kramer, Werner; Schulte, Anke; Le Stunff, Hervé; Liechti, Robin; Xenarios, Ioannis; Vollenweider, Peter; Waeber, Gérard; Uphues, Ingo; Roussel, Ronan; Magnan, Christophe; Ibberson, Mark; Thorens, Bernard (2017) Plasma Dihydroceramides Are Diabetes Susceptibility Biomarker Candidates in Mice and Humans. Cell Reports 18 (9) 2269-2279.
  • Daina, Antoine; Blatter, Marie-Claude; Baillie Gerritsen, Vivienne; Palagi, Patricia M.; Marek, Diana; Xenarios, Ioannis; Schwede, Torsten; Michielin, Olivier; Zoete, Vincent (2017) Drug Design Workshop: A Web-Based Educational Tool To Introduce Computer-Aided Drug Design to the General Public. J. Chem. Educ. 94 (3) 335-344.
  • Zimmermann, Christine; Santos, Aline; Gable, Kenneth; Epstein, Sharon; Gururaj, Charulatha; Chymkowitch, Pierre; Pultz, Dennis; Rødkær, Steven V.; Clay, Lorena; Bjørås, Magnar; Barral, Yves; Chang, Amy; Færgeman, Nils J.; Dunn, Teresa M.; Riezman, Howard; Enserink, Jorrit M. (2017) Correction: TORC1 Inhibits GSK3-Mediated Elo2 Phosphorylation to Regulate Very Long Chain Fatty Acid Synthesis and Autophagy. Cell Rep. 18 (8) 2073-2074.
  • Hulo, Chantal; Masson, Patrick; de Castro, Edouard; Auchincloss, Andrea H.; Foulger, Rebecca; Poux, Sylvain; Lomax, Jane; Bougueleret, Lydie; Xenarios, Ioannis; Le Mercier, Philippe; Alvisi, Gualtiero (2017) The ins and outs of eukaryotic viruses: Knowledge base and ontology of a viral infection. PLoS ONE 11 (2) e0164787.
  • Spannl, Stephanie; Kumichel, Alexandra; Hebbar, Sarita; Kapp, Katja; Gonzalez-Gaitan, Marcos; Winkler, Sylke; Blawid, Rosana; Jessberger, Gregor; Knust, Elisabeth (2017) The Crumbs_C isoform of Drosophila shows tissue- and stage-specific expression and prevents light-dependent retinal degeneration. Biol. Open 6 (2) 165-175.
  • Lovric, Svjetlana; Goncalves, Sara; Gee, Heon Yung; Oskouian, Babak; Srinivas, Honnappa; Choi, Won-Il; Shril, Shirlee; Ashraf, Shazia; Tan, Weizhen; Rao, Jia; Airik, Merlin; Schapiro, David; Braun, Daniela A.; Sadowski, Carolin E.; Widmeier, Eugen; Jobst-Schwan, Tilman; Schmidt, Johanna Magdalena; Girik, Vladimir; Capitani, Guido; Suh, Jung H.; Lachaussée, Noëlle; Arrondel, Christelle; Patat, Julie; Gribouval, Olivier; Furlano, Monica; Boyer, Olivia; Schmitt, Alain; Vuiblet, Vincent; Hashmi, Seema; Wilcken, Rainer; Bernier, Francois P.; Innes, A. Micheil; Parboosingh, Jillian S.; Lamont, Ryan E.; Midgley, Julian P.; Wright, Nicola; Majewski, Jacek; Zenker, Martin; Schaefer, Franz; Kuss, Navina; Greil, Johann; Giese, Thomas; Schwarz, Klaus; Catheline, Vilain; Schanze, Denny; Franke, Ingolf; Sznajer, Yves; Truant, Anne S.; Adams, Brigitte; Désir, Julie; Biemann, Ronald; Pei, York; Ars, Elisabet; Lloberas, Nuria; Madrid, Alvaro; Dharnidharka, Vikas R.; Connolly, Anne M.; Willing, Marcia C.; Cooper, Megan A.; Lifton, Richard P.; Simons, Matias; Riezman, Howard; Antignac, Corinne; Saba, Julie D.; Hildebrandt, Friedhelm (2017) Mutations in sphingosine-1-phosphase lyase cause nephrosis with ichthyosis and adrenal insufficiency. J. Clin. Invest. 127 (3) 912-928.
  • Moreno-Juan, Verónica; Filipchuk, Anton; Antón-Bolaños, Noelia; Mezzera, Cecilia; Gezelius, Henrik; Andrés, Belen; Rodríguez-Malmierca, Luis; Susín, Rafael; Schaad, Olivier; Iwasato, Takuji; Schüle, Roland; Rutlin, Michael; Nelson, Sacha; Ducret, Sebastien; Valdeolmillos, Miguel; Rijli, Filippo M.; López-Bendito, Guillermina (2017) Prenatal thalamic waves regulate cortical area size prior to sensory processing. Nat. Commun. 14172.
  • Jukic, Nebojsa; Redondo-Morata, Lorena; Roux, Aurélien; Scheuring, Simon (2017) Recovery of ESCRT-III Filaments Subjected to Force: An 'Invasive Mode' HS-AFM Study. Biophys. J. 112 (3) 92a.
  • Picco, Andrea; Irastorza-Azcarate, Ibai; Specht, Tanja; Böke, Dominik; Pazos, Irene; Rivier-Cordey, Anne-Sophie; Devos, Damien P.; Kaksonen, Marko; Gallego, Oriol (2017) The In Vivo Architecture of the Exocyst Provides Structural Basis for Exocytosis. Cell 168 (3) 400-412.e18.
  • Cruciani-Guglielmacci, Céline; Bellini, Lara; Denom, Jessica; Oshima, Masaya; Fernandez, Neïké; Normandie-Levi, Priscilla; Berney, Xavier P.; Kassis, Nadim; Rouch, Claude; Dairou, Julien; Gorman, Tracy; Smith, David M.; Marley, Anna; Liechti, Robin; Kuznetsov, Dmitry; Wigger, Leonore; Burdet, Frédéric; Lefèvre, Anne-Laure; Wehrle, Isabelle; Uphues, Ingo; Hildebrandt, Tobias; Rust, Werner; Bernard, Catherine; Ktorza, Alain; Rutter, Guy A.; Scharfmann, Raphael; Xenarios, Ioannis; Le Stunff, Hervé; Thorens, Bernard; Magnan, Christophe; Ibberson, Mark (2017) Molecular phenotyping of multiple mouse strains under metabolic challenge uncovers a role for Elovl2 in glucose-induced insulin secretion. Mol. Metab. 6 (4) 340-351.
  • Barisch, Caroline; Soldati, Thierry; Sassetti, Christopher M. (2017) Mycobacterium marinum Degrades Both Triacylglycerols and Phospholipids from Its Dictyostelium Host to Synthesise Its Own Triacylglycerols and Generate Lipid Inclusions. PLoS Pathog. 13 (1) e1006095.
  • Leiba, Jade; Sabra, Ayman; Bodinier, Romain; Marchetti, Anna; Lima, Wanessa C.; Melotti, Astrid; Perrin, Jackie; Burdet, Frederic; Pagni, Marco; Soldati, Thierry; Lelong, Emmanuelle; Cosson, Pierre (2017) Vps13F links bacterial recognition and intracellular killing in Dictyostelium. Cell. Microbiol. 19 (7) e12722.
  • Picco, A. Kaksonen, Marko (2017) Precise tracking of the dynamics of multiple proteins in endocytic events. Cell Polarity and Morphogenesis Volume 139 (Chapter 3)Ed. Thomas, LecuitMethods in Cell Biology. Academic Press. 51-68.
  • Verolet, Quentin; Dal Molin, Marta; Colom, Adai; Roux, Aurelien; Guénée, Laure; Sakai, Naomi; Matile, Stefan (2017) Twisted Push-Pull Probes with Turn-On Sulfide Donors. Helv. Chim. Acta 100 (2) e1600328.
  • Finn, Robert D.; Attwood, Teresa K.; Babbitt, Patricia C.; Bateman, Alex; Bork, Peer; Bridge, Alan J.; Chang, Hsin-Yu; Dosztányi, Zsuzsanna; El-Gebali, Sara; Fraser, Matthew; Gough, Julian; Haft, David; Holliday, Gemma L.; Huang, Hongzhan; Huang, Xiaosong; Letunic, Ivica; Lopez, Rodrigo; Lu, Shennan; Marchler-Bauer, Aron; Mi, Huaiyu; Mistry, Jaina; Natale, Darren A.; Necci, Marco; Nuka, Gift; Orengo, Christine A.; Park, Youngmi; Pesseat, Sebastien; Piovesan, Damiano; Potter, Simon C.; Rawlings, Neil D.; Redaschi, Nicole; Richardson, Lorna; Rivoire, Catherine; Sangrador-Vegas, Amaia; Sigrist, Christian; Sillitoe, Ian; Smithers, Ben; Squizzato, Silvano; Sutton, Granger; Thanki, Narmada; Thomas, Paul D.; Tosatto, Silvio C. E.; Wu, Cathy H.; Xenarios, Ioannis; Yeh, Lai-Su; Young, Siew-Yit; Mitchell, Alex L. (2017) InterPro in 2017—beyond protein family and domain annotations. Nucleic Acids Res. 45 (D1) D190-D199.
  • Morgat, Anne; Lombardot, Thierry; Axelsen, Kristian B.; Aimo, Lucila; Niknejad, Anne; Hyka-Nouspikel, Nevila; Coudert, Elisabeth; Pozzato, Monica; Pagni, Marco; Moretti, Sébastien; Rosanoff, Steven; Onwubiko, Joseph; Bougueleret, Lydie; Xenarios, Ioannis; Redaschi, Nicole; Bridge, Alan (2017) Updates in rhea—an expert curated resource of biochemical reactions. Nucleic Acids Res. 45 (D1) D415-D418.
  • Mesquita, Ana; Cardenal-Muñoz, Elena; Dominguez, Eunice; Muñoz-Braceras, Sandra; Nuñez-Corcuera, Beatriz; Phillips, Ben A.; Tábara, Luis C.; Xiong, Qiuhong; Coria, Roberto; Eichinger, Ludwig; Golstein, Pierre; King, Jason S.; Soldati, Thierry; Vincent, Olivier; Escalante, Ricardo (2017) Autophagy in Dictyostelium: Mechanisms, regulation and disease in a simple biomedical model. Autophagy 13 (1) 24-40.
  • Kostyrko, Kaja; Neuenschwander, Samuel; Junier, Thomas; Regamey, Alexandre; Iseli, Christian; Schmid-Siegert, Emanuel; Bosshard, Sandra; Majocchi, Stefano; Le Fourn, Valérie; Girod, Pierre-Alain; Xenarios, Ioannis; Mermod, Nicolas (2017) MAR-mediated transgene integration into permissive chromatin and increased expression by recombination pathway engineering. Biotechnol. Bioeng. 114 (2) 384-396.
  • Pescia, Graziano; Guex, Nicolas; Iseli, Christian; Brennan, Liam; Osteras, Magne; Xenarios, Ioannis; Farinelli, Laurent; Conrad, Bernard (2017) Cell-free DNA testing of an extended range of chromosomal anomalies: clinical experience with 6,388 consecutive cases. Genet. Med. 19 (2) 169-175.

2016

  • Moreau, Dimitri; Gruenberg, Jean (2016) Automated Microscopy and High Content Screens (Phenotypic Screens) in Academia Labs. Chimia 70 (12) 878-882.
  • Soleimanpour, Saeideh; Colom, Adai; Derivery, Emmanuel; Gonzalez-Gaitan, Marcos; Roux, Aurelien; Sakai, Naomi; Matile, Stefan (2016) Headgroup Engineering in Mechanosensitive Membrane Probes. Chem. Commun. 52 (100) 14450-14453.
  • Dhingra, Madhur S.; Artois, Jean; Robinson, Timothy P.; Linard, Catherine; Chaiban, Celia; Xenarios, Ioannis; Engler, Robin; Liechti, Robin; Kuznetsov, Dimitry; Xiao, Xiangming; Von Dobschuetz, Sophie; Claes, Filip; Newman, Scott H.; Dauphin, Gwenaëlle; Gilbert, Marius (2016) Global mapping of highly pathogenic avian influenza H5N1 and H5Nx clade 2.3.4.4 viruses with spatial cross-validation. eLife , 10.7554/eLife.19571.
  • Rodrigues, Tania; Krawczyk, Michal; Skowronska-Krawczyk, Dorota; Matter-Sadzinski, Lidia; Matter, Jean-Marc (2016) Delayed neurogenesis with respect to eye growth shapes the pigeon retina for high visual acuity. Development 143 4701-4712.
  • Bonny, Mike; Hui, Xin; Schweizer, Julia; Kaestner, Lars; Zeug, André; Kruse, Karsten; Lipp, Peter (2016) C2-domain mediated nano-cluster formation increases calcium signaling efficiency. Sci. Rep. 6 art. num. 36028.
  • Loviglio, Maria Nicla; Beck, Christine R.; White, Janson J.; Leleu, Marion; Harel, Tamar; Guex, Nicolas; Niknejad, Anne; Bi, Weimin; Chen, Edward S.; Crespo, Isaac; Yan, Jiong; Charng, Wu-Lin; Gu, Shen; Fang, Ping; Coban-Akdemir, Zeynep; Shaw, Chad A.; Jhangiani, Shalini N.; Muzny, Donna M.; Gibbs, Richard A.; Rougemont, Jacques; Xenarios, Ioannis; Lupski, James R.; Reymond, Alexandre (2016) Identification of a RAI1-associated disease network through integration of exome sequencing, transcriptomics, and 3D genomics. Genome Med. 8 (1) 105.
  • Aumeier, Charlotte; Schaedel, Laura; Gaillard, Jérémie; John, Karin; Blanchoin, Laurent; Théry, Manuel (2016) Self-repair promotes microtubule rescue. Nat. Cell Biol. 18 (10) 1054-1064.
  • Dorier, Julien; Crespo, Isaac; Niknejad, Anne; Liechti, Robin; Ebeling, Martin; Xenarios, Ioannis (2016) Boolean regulatory network reconstruction using literature based knowledge with a genetic algorithm optimization method. BMC Bioinf. 75 (6) 066701.
  • Antonny, Bruno; Burd, Christopher; De Camilli, Pietro; Chen, Elizabeth; Daumke, Oliver; Faelber, Katja; Ford, Marijn; Frolov, Vadim A.; Frost, Adam; Hinshaw, Jenny E.; Kirchhausen, Tom; Kozlov, Michael M.; Lenz, Martin; Low, Harry H.; McMahon, Harvey; Merrifield, Christien; Pollard, Thomas D.; Robinson, Phillip J.; Roux, Aurélien; Schmid, Sandra (2016) Membrane fission by dynamin: what we know and what we need to know. EMBO J. 35 (21) 2270-2284.
  • Megyeri, Márton; Riezman, Howard; Schuldiner, Maya; Futerman, Anthony H. (2016) Making Sense of the Yeast Sphingolipid Pathway. J. Mol. Biol. 428 (24 Part A) 4765-4775.
  • Buckley, Catherine M.; Gopaldass, Navin; Bosmani, Cristina; Johnston, Simon A.; Soldati, Thierry; Insall, Robert H.; King, Jason S. (2016) WASH drives early recycling from macropinosomes and phagosomes to maintain surface phagocytic receptors. Proc. Natl. Acad. Sci. USA 113 (40) E5906-E5915.
  • Muriel, Olivia; Tomas, Alejandra; Scott, Cameron C.; Gruenberg, Jean (2016) Moesin and cortactin control actin-dependent multivesicular endosome biogenesis. Mol. Biol. Cell 27 (21) 3305-3316.
  • Van Voorhis, Wesley C.; Adams, John H.; Adelfio, Roberto; Ahyong, Vida; Akabas, Myles H.; Alano, Pietro; Alday, Aintzane; Alemán Resto, Yesmalie; Alsibaee, Aishah; Alzualde, Ainhoa; Andrews, Katherine T.; Avery, Simon V.; Avery, Vicky M.; Ayong, Lawrence; Baker, Mark; Baker, Stephen; Ben Mamoun, Choukri; Bhatia, Sangeeta; Bickle, Quentin; Bounaadja, Lotfi; Bowling, Tana; Bosch, Jürgen; Boucher, Lauren E.; Boyom, Fabrice F.; Brea, Jose; Brennan, Marian; Burton, Audrey; Caffrey, Conor R.; Camarda, Grazia; Carrasquilla, Manuela; Carter, Dee; Belen Cassera, Maria; Chih-Chien Cheng, Ken; Chindaudomsate, Worathad; Chubb, Anthony; Colon, Beatrice L.; Colón-López, Daisy D.; Corbett, Yolanda; Crowther, Gregory J.; Cowan, Noemi; D\'Alessandro, Sarah; Le Dang, Na; Delves, Michael; DeRisi, Joseph L.; Du, Alan Y.; Duffy, Sandra; Abd El-Salam El-Sayed, Shimaa; Ferdig, Michael T.; Fernández Robledo, José A.; Fidock, David A.; Florent, Isabelle; Fokou, Patrick V. T.; Galstian, Ani; Gamo, Francisco Javier; Gokool, Suzanne; Gold, Ben; Golub, Todd; Goldgof, Gregory M.; Guha, Rajarshi; Guiguemde, W. Armand; Gural, Nil; Guy, R. Kiplin; Hansen, Michael A. E.; Hanson, Kirsten K.; Hemphill, Andrew; Hooft van Huijsduijnen, Rob; Horii, Takaaki; Horrocks, Paul; Hughes, Tyler B.; Huston, Christopher; Igarashi, Ikuo; Ingram-Sieber, Katrin; Itoe, Maurice A.; Jadhav, Ajit; Naranuntarat Jensen, Amornrat; Jensen, Laran T.; Jiang, Rays H. Y.; Kaiser, Annette; Keiser, Jennifer; Ketas, Thomas; Kicka, Sebastien; Kim, Sunyoung; Kirk, Kiaran; Kumar, Vidya P.; Kyle, Dennis E.; Lafuente, Maria Jose; Landfear, Scott; Lee, Nathan; Lee, Sukjun; Lehane, Adele M.; Li, Fengwu; Little, David; Liu, Liqiong; Llinás, Manuel; Loza, Maria I.; Lubar, Aristea; Lucantoni, Leonardo; Lucet, Isabelle; Maes, Louis; Mancama, Dalu; Mansour, Nuha R.; March, Sandra; McGowan, Sheena; Medina Vera, Iset; Meister, Stephan; Mercer, Luke; Mestres, Jordi; Mfopa, Alvine N.; Misra, Raj N.; Moon, Seunghyun; Moore, John P.; Morais Rodrigues da Costa, Francielly; Müller, Joachim; Muriana, Arantza; Nakazawa Hewitt, Stephen; Nare, Bakela; Nathan, Carl; Narraidoo, Nathalie; Nawaratna, Sujeevi; Ojo, Kayode K.; Ortiz, Diana; Panic, Gordana; Papadatos, George; Parapini, Silvia; Patra, Kailash; Pham, Ngoc; Prats, Sarah; Plouffe, David M.; Poulsen, Sally-Ann; Pradhan, Anupam; Quevedo, Celia; Quinn, Ronald J.; Rice, Christopher A.; Abdo Rizk, Mohamed; Ruecker, Andrea; St. Onge, Robert; Salgado Ferreira, Rafaela; Samra, Jasmeet; Robinett, Natalie G.; Schlecht, Ulrich; Schmitt, Marjorie; Silva Villela, Filipe; Silvestrini, Francesco; Sinden, Robert; Smith, Dennis A.; Soldati, Thierry; Spitzmüller, Andreas; Stamm, Serge Maximilian; Sullivan, David J.; Sullivan, William; Suresh, Sundari; Suzuki, Brian M.; Suzuki, Yo; Swamidass, S. Joshua; Taramelli, Donatella; Tchokouaha, Lauve R. Y.; Theron, Anjo; Thomas, David; Tonissen, Kathryn F.; Townson, Simon; Tripathi, Abhai K.; Trofimov, Valentin; Udenze, Kenneth O.; Ullah, Imran; Vallieres, Cindy; Vigil, Edgar; Vinetz, Joseph M.; Voong Vinh, Phat; Vu, Hoan; Watanabe, Nao-aki; Weatherby, Kate; White, Pamela M.; Wilks, Andrew F.; Winzeler, Elizabeth A.; Wojcik, Edward; Wree, Melanie; Wu, Wesley; Yokoyama, Naoaki; Zollo, Paul H. A.; Abla, Nada; Blasco, Benjamin; Burrows, Jeremy; Laleu, Benoît; Leroy, Didier; Spangenberg, Thomas; Wells, Timothy; Willis, Paul A.; Phillips, Margaret A. (2016) Open Source Drug Discovery with the Malaria Box Compound Collection for Neglected Diseases and Beyond. PLoS Pathog. 12 (7) e1005763.
  • Artois, Jean; Newman, Scott H.; Dhingra, Madhur S.; Chaiban, Celia; Linard, Catherine; Cattoli, Giovanni; Monne, Isabella; Fusaro, Alice; Xenarios, Ioannis; Engler, Robin; Liechti, Robin; Kuznetsov, Dmitri; Pham, Thanh Long; Nguyen, Tung; Pham, Van Dong; Castellan, David; Von Dobschuetz, Sophie; Claes, Filip; Dauphin, Gwenaëlle; Inui, Ken; Gilbert, Marius (2016) Clade-level Spatial Modelling of HPAI H5N1 Dynamics in the Mekong Region Reveals New Patterns and Associations with Agro-Ecological Factors. Sci. Rep. 6 30316.
  • Delincé, Matthieu Jean-Hubert; Bureau, Jean-Baptiste; López-Jiménez, Ana Teresa; Cosson, Pierre; Soldati, Thierry; McKinney, John (2016) A microfluidic cell-trapping device for single-cell tracking of host-microbe interactions. Lab Chip 16 (17) 3276-3285.
  • Zhang, Xuezhi; Soldati, Thierry (2016) Of Amoebae and Men: Extracellular DNA Traps as an Ancient Cell-Intrinsic Defense Mechanism. Front. Immunol. 7 269.
  • Wollrab, Viktoria; Thiagarajan, Raghavan; Wald, Anne; Kruse, Karsten; Riveline, Daniel (2016) Still and rotating myosin clusters determine cytokinetic ring constriction. Nat. Commun. 7 art. num. 11860.
  • Kukulski, Wanda; Picco, Andrea; Specht, Tanja; Briggs, John A. G.; Kaksonen, Marko (2016) Clathrin modulates vesicle scission, but not invagination shape, in yeast endocytosis. eLife 5 e16036.
  • Johann, D.; Goswami, D.; Kruse, Karsten (2016) Assembly of bipolar microtubule structures by passive cross-linkers and molecular motors. Phys. Rev. E 93 062415.
  • Hohendahl, Annika; Roux, Aurélien; Galli, Valentina (2016) Structural insights into the centronuclear myopathy-associated functions of BIN1 and dynamin 2. J. Struct. Biol. 196 (1) 37-47.
  • Sikorska, Natalia; Lemus, Leticia; Aguilera-Romero, Auxiliadora; Manzano-Lopez, Javier; Riezman, Howard; Muñiz, Manuel; Goder, Veit (2016) Limited ER quality control for GPI-anchored proteins. J. Cell Biol. 269 (6) 19695-704.
  • Bertipaglia, Chiara; Schneider, Sarah; Jakobi, Arjen J.; Tarafder, Abul K.; Bykov, Yury S.; Picco, Andrea; Kukulski, Wanda; Kosinski, Jan; Hagen, Wim J. H.; Ravichandran, Arvind C.; Wilmanns, Matthias; Kaksonen, Marko; Briggs, John A. G.; Sachse, Carsten (2016) Higher-order assemblies of oligomeric cargo receptor complexes form the membrane scaffold of the Cvt vesicle. EMBO Rep. 17 (7) 1044-1060.
  • Degueurce, Gwendoline; D\'Errico, Ilenia; Pich, Christine; Ibberson, Mark; Schütz, Frédéric; Montagner, Alexandra; Sgandurra, Marie; Mury, Lionel; Jafari, Paris; Boda, Akash; Meunier, Julien; Rezzonico, Roger; Brembilla, Nicolò Costantino; Hohl, Daniel; Kolios, Antonios; Hofbauer, Günther; Xenarios, Ioannis; Michalik, Liliane (2016) Identification of a novel PPARβ/δ/miR‐21‐3p axis in UV‐induced skin inflammation. EMBO Mol Med. e201505384.
  • Rodius, Sophie; Androsova, Ganna; Götz, Lou; Liechti, Robin; Crespo, Isaac; Merz, Susanne; Nazarov, Petr V.; de Klein, Niek; Jeanty, Céline; González-Rosa, Juan M.; Muller, Arnaud; Bernardin, Francois; Niclou, Simone P.; Vallar, Laurent; Mercader, Nadia; Ibberson, Mark; Xenarios, Ioannis; Azuaje, Francisco (2016) Analysis of the dynamic co-expression network of heart regeneration in the zebrafish. Sci. Rep. 6 26822.
  • Holtzer, Laurent; Oleinich, Igor; Anzola, Marcello; Lindberg, Eric; Sadhu, Kalyan K.; Gonzalez-Gaitan, Marcos; Winssinger, Nicolas (2016) Nucleic Acid Templated Chemical Reaction in a Live Vertebrate. ACS Cent. Sci. 2 (6) 394-400.
  • Gueho, Aurélie; Bosmani, Cristina; Gopaldass, Navin; Molle, Virginie; Soldati, Thierry; Letourneur, François (2016) Dictyostelium EHD associates with Dynamin and participates in phagosome maturation. J. Cell Sci. 129 2354-2367.
  • Savoglidis, Georgios; da Silveira dos Santos, Aline Xavier; Riezman, Isabelle; Angelino, Paolo; Riezman, Howard; Hatzimanikatis, Vassily (2016) A method for analysis and design of metabolism using metabolomics data and kinetic models: application on lipidomics using a novel kinetic model of sphingolipid metabolism. Metab. Eng. 37 46-62.
  • Druce, Megan; Hulo, Chantal; Masson, Patrick; Sommer, Paula; Xenarios, Ioannis; Le Mercier, Philippe; De Oliveira, Tulio (2016) Improving HIV proteome annotation: new features of BioAfrica HIV Proteomics Resource. Database 2016 baw045.
  • Zufferey, Anne; Ibberson, Mark; Reny, Jean-Luc; Nolli, S?verine; Schvartz, Domitille; Docquier, Myl?ne; Xenarios, Ioannis; Sanchez, Jean-Charles; Fontana, Pierre (2016) New molecular insights into modulation of platelet reactivity in aspirin-treated patients using a network-based approach. Hum Genet 101 (43) 130-414.
  • Altenhoff, Adrian M.; Boeckmann, Brigitte; Capella-Gutierrez, Salvador; Dalquen, Daniel A.; DeLuca, Todd; Forslund, Kristoffer; Huerta-Cepas, Jaime; Linard, Benjamin; Pereira, Cécile; Pryszcz, Leszek P.; Schreiber, Fabian; da Silva, Alan Sousa; Szklarczyk, Damian; Train, Clément-Marie; Bork, Peer; Lecompte, Odile; von Mering, Christian; Xenarios, Ioannis; Sjölander, Kimmen; Jensen, Lars Juhl; Martin, Maria J.; Muffato, Matthieu; Altenhoff, Adrian M.; Boeckmann, Brigitte; Capella-Gutierrez, Salvador; DeLuca, Todd; Forslund, Kristoffer; Huerta-Cepas, Jaime; Linard, Benjamin; Pereira, Cécile; Pryszcz, Leszek P.; Schreiber, Fabian; da Silva, Alan Sousa; Szklarczyk, Damian; Train, Clément-Marie; Lecompte, Odile; Xenarios, Ioannis; Sjölander, Kimmen; Martin, Maria J.; Muffato, Matthieu; Gabaldón, Toni; Lewis, Suzanna E.; Thomas, Paul D.; Sonnhammer, Erik; Dessimoz, Christophe; Gabaldón, Toni; Lewis, Suzanna E.; Thomas, Paul D.; Sonnhammer, Erik; Dessimoz, Christophe (2016) Standardized benchmarking in the quest for orthologs. Nat. Methods 13 425-430.
  • Fritzsche, Marco; Erlenkämper, Christoph; Moeendarbary, Emade; Charras, Guillaume; Kruse, Karsten (2016) Actin kinetics shapes cortical network structure and mechanics. Sci. Adv. 2 (4) e1501337.
  • Alessandri, Kevin; Feyeux, Maxime; Gurchenkov, Basile; Delgado, Christophe; Trushko, Anastasiya; Krause, Karl-Heinz; Vignjevic, Danijela; Nassoy, Pierre; Roux, Aurélien (2016) A 3D printed microfluidic device for production of functionalized hydrogel microcapsules for culture and differentiation of human Neuronal Stem Cells (hNSC). Lab Chip 16 (9) 1593-1604.
  • Lugli, Natalia; Kamileri, Irene; Keogh, Adrian; Malinka, Thomas; Sarris, Michalis E.; Talianidis, Iannis; Schaad, Olivier; Candinas, Daniel; Stroka, Deborah; Halazonetis, Thanos D. (2016) R-spondin 1 and noggin facilitate expansion of resident stem cells from non-damaged gallbladders. EMBO Rep. 17 (5) 769-779.
  • Crespo, Isaac; Doucey, Marie-Agnès; Xenarios, Ioannis (2016) Social networks help to infer causality in the tumor microenvironment. BMC Res. Notes 9 (1) 1-10.
  • Zhang, Xuezhi; Zhuchenko, Olga; Kuspa, Adam; Soldati, Thierry (2016) Social amoebae trap and kill bacteria by casting DNA nets. Nat. Commun. 7 10938.
  • Zufferey, Anne; Ibberson, Mark; Reny, Jean-Luc; Nolli, Séverine; Schvartz, Domitille; Docquier, Mylène; Xenarios, Ioannis; Sanchez, Jean-Charles; Fontana, Pierre (2016) New molecular insights into modulation of platelet reactivity in aspirin-treated patients using a network-based approach. Hum. Genet. 135 (4) 403-414.
  • Crippa, Stefania; Nemir, Mohamed; Ounzain, Samir; Ibberson, Mark; Berthonneche, Corinne; Sarre, Alexandre; Boisset, Gaëlle; Maison, Damien; Harshman, Keith; Xenarios, Ioannis; Diviani, Dario; Schorderet, Daniel; Pedrazzini, Thierry (2016) Comparative transcriptome profiling of the injured zebrafish and mouse hearts identifies miRNA-dependent repair pathways. Cardiovasc. Res. 110 (1) 73-84.
  • Wallabregue, Antoine; Moreau, Dimitri; Sherin, Peter; Moneva Lorente, Pau; Jarolímová, Zdeňka; Bakker, Eric; Vauthey, Eric; Gruenberg, Jean; Lacour, Jérôme (2016) Selective Imaging of Late Endosomes with a pH-Sensitive Diazaoxatriangulene Fluorescent Probe. J. Am. Chem. Soc. 138 (6) 1752-1755.
  • Mamińska1, Agnieszka; Bartosik, Anna; Banach-Orłowska, Magdalena; Pilecka, Iwona; Jastrzębski, Kamil; Zdżalik-Bielecka, Daria; Castanon, Irinka; Poulain, Morgane; Neyen, Claudine; Wolińska-Nizioł, Lidia; Toruń, Anna; Szymańska, Ewelina; Kowalczyk, Agata; Piwocka, Katarzyna; Simonsen, Anne; Stenmark, Harald; Fürthauer, Maximilian; González-Gaitán, Marcos; Miaczynska, Marta (2016) ESCRT proteins restrict constitutive NF-κB signaling by trafficking cytokine receptors. Sci. Signaling 9 (411) ra8.
  • Slepikas, Liudas; Chiriano, Gianpaolo; Perozzo, Remo; Tardy, Sébastien; Kranjc-Pietrucci, Agata; Patthey-Vuadens, Ophélie; Ouertatani-Sakouhi, Hajer; Kicka, Sébastien; Harrison, Christopher F.; Scrignari, Tiziana; Perron, Karl; Hilbi, Hubert; Soldati, Thierry; Cosson, Pierre; Tarasevicius, Eduardas; Scapozza, Leonardo (2016) In silico driven design and synthesis of rhodanine derivatives as novel antibacterials targeting the enoyl reductase InhA. J. Med. Chem. 59 (24) 10917-10928.
  • Boutet, Emmanuel Lieberherr, Damien Tognolli, Michael Schneider, Michel Bansal, Parit Bridge, Alan J. Poux, Sylvain Bougueleret, Lydie Xenarios, Ioannis (2016) UniProtKB/Swiss-Prot, the Manually Annotated Section of the UniProt KnowledgeBase: How to Use the Entry View. Plant Bioinformatics Volume 1374Ed. Edwards, DavidMethods in Molecular Biology. Springer. (New-York). 23-54.
  • Garcia, Alba Alfonso; Pfisterer, Simon G.; Riezman, Howard; Ikonen, Elina; Potma, Eric O. (2016) D38-cholesterol as a Raman active probe for imaging intracellular cholesterol storage. J. Biomed. Opt. 21 (6) 061003.
  • Reny, Jean-Luc; Fontana, Pierre; Hochholzer, Willibald; Neumann, Franz Josef; ten Berg, Jurriën; Janssen, Paul W.; Geisler, Tobias; Gawaz, Meinrad; Marcucci, Rossella; Gori, Anna-Maria; Cuisset, Thomas; Alessi, Marie-Christine; Berdagué, Philippe; Gurbel, Paul A.; Yong, Gerald; Angiolillo, Dominick J.; Aradi, Daniel; Beigel, Roy; Campo, Gianluca; Combescure, Christophe (2016) Vascular risk levels affect the predictive value of platelet reactivity for the occurrence of MACE in patients on clopidogrel. Systematic review and meta-analysis of individual patient data.. Thromb. Haemostasis 115 (4) 844-855.
  • Alfaiz, Ali Abdullah; Müller, Verena; Boutry-Kryza, Nadia; Ville, Dorothée; Guex, Nicolas; de Bellescize, Julitta; Rivier, Clotilde; Labalme, Audrey; des Portes, Vincent; Edery, Patrick; Till, Marianne; Xenarios, Ioannis; Sanlaville, Damien; Herrmann, Johannes M.; Lesca, Gaétan; Reymond, Alexandre (2016) West syndrome caused by homozygous variant in the evolutionary conserved gene encoding the mitochondrial elongation factor GUF1. Eur. J. Hum. Genet. 24 1001-1008.
  • Muñiz, Manuel; Riezman, Howard (2016) Trafficking of glycosylphosphatidyl inositol anchored proteins from the endoplasmic reticulum to the cell surface. J. Lipid Res. 57 352-360.
  • Bron, Sylvian; Henry, Luc; Faes-van\'t Hull, Eveline; Turrini, Riccardo; Vanhecke, Dominique; Guex, Nicolas; Ifticene-Treboux, Assia; Marina Iancu, Emanuela; Semilietof, Aikaterini; Rufer, Nathalie; Lehr, Hans-Anton; Xenarios, Ioannis; Coukos, George; Delaloye, Jean-François; Doucey, Marie-Agnès (2016) TIE-2-expressing monocytes are lymphangiogenic and associate specifically with lymphatics of human breast cancer. OncoImmunology 5 (2) e1073882.

2015

  • Derivery, Emmanuel; Seum, Carole; Daeden, Alicia; Loubéry, Sylvain; Holtzer, Laurent; Jülicher, Frank; Gonzalez-Gaitan, Marcos (2015) Polarized endosome dynamics by spindle asymmetry during asymmetric cell division. Nature 528 (7581) 280-285.
  • , SIB Swiss Institute of Bioinformatics Members (2015) The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases. Nucleic Acids Res. 44 (D1) D27-D37.
  • Höglinger, Doris; Haberkant, Per; Aguilera-Romero, Auxiliadora; Riezman, Howard; Porter, Forbes D.; Platt, Frances M.; Galione, Antony; Schultz, Carsten (2015) Intracellular sphingosine releases calcium from lysosomes. eLife 4 e10616.
  • Chiaruttini, Nicolas; Redondo-Morata, Lorena; Colom, Adai; Humbert, Frédéric; Lenz, Martin; Scheuring, Simon; Roux, Aurélien (2015) Relaxation of Loaded ESCRT-III Spiral Springs Drives Membrane Deformation. Cell 163 (4) 866-879.
  • Lukinavičius, Gražvydas; Blaukopf, Claudia; Pershagen, Elias; Schena, Alberto; Reymond, Luc; Derivery, Emmanuel; Gonzalez-Gaitan, Marcos; D’Este, Elisa; Hell, Stefan W.; Wolfram Gerlich, Daniel; Johnsson, Kai (2015) SiR–Hoechst is a far-red DNA stain for live-cell nanoscopy. Nat. Commun. 6 8497.
  • Aumeier, Charlotte; Polinski, Ellen; Menzel, Diedrik (2015) Actin, actin-related proteins and profilin in diatoms: A comparative genomic analysis. Mar. Genomics 23 133-142.
  • Gonzalez-Gaitan, Marcos; Roux, Aurélien (2015) When cell biology meets theory. J. Cell Biol. 210 (7) 1041-1045.
  • Dan Dunn, Joe; Alvarez, Luis A. J.; Zhang, Xuezhi; Soldati, Thierry (2015) Reactive oxygen species and mitochondria: A nexus of cellular homeostasis. Redox Biol. 6 472-485.
  • Xie, Xiaojiang; Gutierrez, Agustin; Trofimov, Valentin; Szilágyi, István; Soldati, Thierry; Bakker, Eric (2015) Charged Solvatochromic Dyes as Signal Transducers in pH Independent Fluorescent and Colorimetric Ion Selective Nanosensors. Anal. Chem. 87 (19) 9954-9959.
  • Johann, D.; Goswami, D.; Kruse, Karsten (2015) Generation of Stable Overlaps between Antiparallel Filaments. Phys. Rev. Lett. 115 art. num. 118103.
  • Blom, Tomas; Li, Shiqian; Dichlberger, Andrea; Bäck, Nils; Kim, Young Ah; Loizides-Mangold, Ursula; Riezman, Howard; Bittman, Robert; Ikonen, Elina (2015) LAPTM4B facilitates late endosomal ceramide export to control cell death pathways. Nat. Chem. Biol. 11 (10) 799-806.
  • Chasapi, Anastasia; Wachowicz, Paulina; Niknejad, Anne; Collin, Philippe; Krapp, Andrea; Cano, Elena; Simanis, Viesturs; Xenarios, Ioannis; Toda, Takashi (2015) An Extended, Boolean Model of the Septation Initiation Network in S.Pombe Provides Insights into Its Regulation. PLoS ONE 10 (8) e0134214.
  • Doucey, Marie-Agnès; Xenarios, Ioannis (2015) Toward a rational design of combination therapy in cancer. OncoImmunology 4 (11) e1046674.
  • Harrison, Christopher F.; Kicka, Sébastien; Kranjc, Agata; Finsel, Ivo; Chiriano, Gianpaolo; Ouertatani-Sakouhi, Hajer; Soldati, Thierry; Scapozza, Leonoardo; Hilbi, Hubert (2015) Adrenergic antagonists restrict replication of Legionella. Microbiol. 161 (7) 1392-1406.
  • Boeckmann, Brigitte; Marcet-Houben, Marina; Rees, Jonathan A.; Forslund, Kristoffer; Huerta-Cepas, Jaime; Muffato, Matthieu; Yilmaz, Pelin; Xenarios, Ioannis; Bork, Peer; Lewis, Suzanna E.; Gabaldón, Toni (2015) Quest for Orthologs entails Quest for Tree of Life: in Search of the Gene Stream. Genome Biol. Evol. 7 (7) 1988-1999.
  • Toruń, Anna; Szymańska, Ewelina; Castanon, Irinka; Wolińska-Nizioł, Lidia; Bartosik, Anna; Jastrzębski, Kamil; Miętkowska, Magdalena; González-Gaitán, Marcos; Miaczynska, Marta; Königshoff, Melanie (2015) Endocytic Adaptor Protein Tollip Inhibits Canonical Wnt Signaling. PLoS ONE 10 (6) e0130818.
  • Romanova-Michaelides, Maria; Aguilar-Hidalgo, Daniel; Jülicher, Frank; Gonzalez-Gaitan, Marcos (2015) The wing and the eye: a parsimonious theory for scaling and growth control?. Wiley Interdiscip. Rev.: Dev. Biol. 4 (6) 591-608.
  • Avinoam, Ori; Schorb, Martin; Beese, Carsten J.; Briggs, John A. G.; Kaksonen, Marko (2015) Endocytic sites mature by continuous bending and remodeling of the clathrin coat. Science 348 (6241) 1369-1372.
  • Frechin, Mathieu; Stoeger, Thomas; Daetwyler, Stephan; Gehin, Charlotte; Battich, Nico; Damm, Eva-Maria; Stergiou, Lilli; Riezman, Howard; Pelkmans, Lucas (2015) Cell-intrinsic adaptation of lipid composition to local crowding drives social behaviour. Nature 523 (7558) 88-91.
  • Schaper, Elke; Korsunsky, Alexander; Messina, Antonio; Murri, Riccardo; Pečerska, Jūlija; Stockinger, Heinz; Zoller, Stefan; Xenarios, Ioannis; Anisimova, Maria (2015) TRAL: Tandem repeat annotation library. Bioinformatics 31 (18) 3051-3053.
  • Barbier de Reuille, Pierre; Routier-Kierzkowska, Anne-Lise; Kierzkowski, Daniel; Bassel, George W.; Schüpbach, Thierry; Tauriello, Gerardo; Bajpai, Namrata; Strauss, Sören; Weber, Alain; Kiss, Annamaria; Burian, Agata; Hofhuis, Hugo; Sapala, Aleksandra; Lipowczan, Marcin; Heimlicher, Maria B.; Robinson, Sarah; Bayer, Emmanuelle M.; Basler, Konrad; Koumoutsakos, Petros; Roeder, Adrienne H. K.; Aegerter-Wilmsen, Tinri; Nakayama, Naomi; Tsiantis, Miltos; Hay, Angela; Kwiatkowska, Dorota; Xenarios, Ioannis; Kuhlemeier, Cris; Smith, Richard S. (2015) MorphoGraphX: A platform for quantifying morphogenesis in 4D. eLife 4 e05864.
  • Aimo, Lucila; Liechti, Robin; Nouspikel, Nevila; Niknejad, Anne; Gleizes, Anne; Gotz, Lou; Kuznetsov, Dmitry; David, Fabrice P. A.; van der Gout, Gisou; Riezman, Howard; Bougueleret, Lydie; Xenarios, Ioannis; Bridge, Alan (2015) The SwissLipids knowledgebase for lipid biology. Bioinformatics 31 (17) 2860-2866.
  • Harrison, Christopher F.; Chiriano, Gianpaolo; Finsel, Ivo; Manske, Christian; Hoffmann, Christine; Steiner, Bernhard; Kranjc, Agata; Patthey-Vuadens, Ophelie; Kicka, Sebastien; Trofimov, Valentin; Ouertatani-Sakhoui, Hajer; Soldati, Thierry; Scapozza, Leonardo; Hilbi, Hubert (2015) Amoebae-based screening reveals a novel family of compounds restricting intracellular Legionella pneumophila. ACS Infect. Dis. 1 (7) 327-338.
  • Xie, Xiaojiang; Gutiérrez, Agustín; Trofimov, Valentin; Szilagyi, Istvan; Soldati, Thierry; Bakker, Eric (2015) Potassium Sensitive Optical Nanosensors Containing Voltage Sensitive Dyes. CHIMIA 69 (4) 196-198.
  • Skruzny, Michal; Desfosses, Ambroise; Prinz, Simone; Dodonova, Svetlana O.; Gieras, Anna; Uetrecht, Charlotte; Jakobi, Arjen J.; Abella, Marc; Hagen, Wim J.H.; Schulz, Joachim; Meijers, Rob; Rybin, Vladimir; Briggs, John A.G.; Sachse, Carsten; Kaksonen, Marko (2015) An Organized Co-assembly of Clathrin Adaptors Is Essential for Endocytosis. Dev. Cell 33 (2) 150-162.
  • Overduin, Michael; Rajesh, Sandya; Gruenberg, Jean; Lenoir, Marc (2015) Secondary structure and 1H, 13C, 15N resonance assignments of the endosomal sorting protein sorting nexin 3. Biomol. NMR Assign. 9 (2) 355-358.
  • Barisch, Caroline; Paschke, Peggy; Hagedorn, Monica; Maniak, Markus; Soldati, Thierry (2015) Lipid droplet dynamics at early stages of Mycobacterium marinum infection in Dictyostelium. Cell. Microbiol. 17 (9) 1332-1349.
  • Scott, Cameron C.; Vossio, Stefania; Vacca, Fabrizio; Snijder, Berend; Larios, Jorge; Schaad, Olivier; Guex, Nicolas; Kuznetsov, Dmitry; Martin, Olivier; Chambon, Marc; Turcatti, Gerardo; Pelkmans, Lucas; Gruenberg, Jean (2015) Wnt directs the endosomal flux of LDL-derived cholesterol and lipid droplet homeostasis. EMBO Rep. 16 (6) 741-752.
  • Dikoglu, Esra; Alfaiz, Ali; Gorna, Maria; Bertola, Deborah; Chae, Jong Hee; Cho, Tae-Joon; Derbent, Murat; Alanay, Yasemin; Guran, Tulay; Kim, Ok-Hwa; Llerenar Jr, Juan C.; Yamamoto, Guillerme; Superti-Furga, Giulio; Reymond, Alexandre; Xenarios, Ioannis; Stevenson, Brian; Campos-Xavier, Belinda; Bonafé, Luisa; Superti-Furga, Andrea; Unger, Sheila (2015) Mutations in LONP1, a mitochondrial matrix protease, cause CODAS syndrome. Am. J. Med. Genet. 167 (7) 1501-1509.
  • Loubéry, Sylvain; Seum, Carole; Moraleda, Ana; Daeden, Alicia; Fürthauer, Maximilian; Gonzalez-Gaitan, Marcos (2015) [Erratum] Uninflatable and Notch Control the Targeting of Sara Endosomes during Asymmetric Division. Curr. Biol. 25 (6) 817-818.
  • Guex, Nicolas; Crespo, Isaac; Bron, Sylvian; Ifticene-Treboux, Assia; Faes-van\'t Hull, Eveline; Kharoubi, Solange; Liechti, Robin; Werffeli, Patricia; Ibberson, Mark; Majo, Francois; Nicolas, Michäel; Laurent, Julien; Garg, Abhishek; Zaman, Khalil; Lehr, Hans-Anton; Stevenson, Brian J.; Rüegg, Curzio; Coukos, George; Delaloye, Jean-François; Xenarios, Ioannis; Doucey, Marie-Agnès; Mac Gabhann, Feilim (2015) Angiogenic Activity of Breast Cancer Patients’ Monocytes Reverted by Combined Use of Systems Modeling and Experimental Approaches. PLoS Comput Biol 11 (3) e1004050.
  • Suresh, Harsha Garadi; da Silveira dos Santos, Aline Xavier; Kukulski, Wanda; Tyedmers, Jens; Riezman, Howard; Bukau, Bernd; Mogk, Axel (2015) Prolonged starvation drives reversible sequestration of lipid biosynthetic enzymes and organelle reorganization in Saccharomyces cerevisiae. Mol. Biol. Cell 26 (9) 1601-1615.
  • Kressmann, Sabine; Campos, Claudia; Castanon, Irinka; Fürthauer, Maximilian; González-Gaitán, Marcos (2015) Directional Notch trafficking in Sara endosomes during asymmetric cell division in the spinal cord. Nat. Cell Biol. 17 (3) 333-339.
  • Saleem, Mohammed; Morlot, Sandrine; Hohendahl, Annika; Manzi, John; Lenz, Martin; Roux, Aurélien (2015) A balance between membrane elasticity and polymerization energy sets the shape of spherical clathrin coats. Nat. Commun. 6 6249.
  • Barisch, Caroline López-Jiménez, Ana T. Soldati, Thierry (2015) Live Imaging of Mycobacterium marinum Infection in Dictyostelium discoideum. Mycobacteria Protocols Vol. 1285 (Chapter 23)Ed. Parish, Tanya Roberts, David M.Methods in Molecular Biology. Springer. (New York). 369-385.
  • Picco, Andrea; Mund, Markus; Ries, Jonas; Nédélec, François; Kaksonen, Marko (2015) Visualizing the functional architecture of the endocytic machinery. eLife 4 e04535.
  • Gerstenmaier, Lilli; Pilla, Rachel; Herrmann, Lydia; Herrmann, Hendrik; Prado, Monica; Villafano, Geno J.; Kolonko, Margot; Reimer, Rudolph; Soldati, Thierry; King, Jason S.; Hagedorn, Monica (2015) The autophagic machinery ensures nonlytic transmission of mycobacteria. Proc. Natl. Acad. Sci. USA 112 (7) E687-E692.
  • Naldi, Aurélien; Monteiro, Pedro T.; Müssel, Christoph; Kestler, Hans A.; Thieffry, Denis; Xenarios, Ioannis; Saez-Rodriguez, Julio; Helikar, Tomas; Chaouiya, Claudine (2015) Cooperative development of logical modelling standards and tools with CoLoMoTo. Bioinformatics 31 (7) 1154-1159.
  • Manzano-Lopez, Javier; Perez-Linero, Ana M.; Aguilera-Romero, Auxiliadora; Martin, Maria E.; Okano, Tatsuki; Silva, Daniel Varon; Seeberger, Peter H.; Riezman, Howard; Funato, Kouichi; Goder, Veit; Wellinger, Ralf E.; Muñiz, Manuel (2015) COPII Coat Composition Is Actively Regulated by Luminal Cargo Maturation. Curr. Biol. 25 (2) 152-162.
  • Johnson, Shem Gruenberg, Jean (2015) The pathway of VSV entry into cells. Biology and Pathogenesis of Rhabdo- and Filoviruses (Chapter 3)Ed. Pattnaik, Asit K. Whitt, Michael A.World Scientific. 33-47.
  • Wilson-Zbinden, Caroline; dos Santos, Aline Xavier da Silveira; Stoffel-Studer, Ingrid; van der Vaart, Aniek; Hofmann, Kay; Reggiori, Fulvio; Riezman, Howard; Kraft, Claudine; Peter, Matthias (2015) Autophagy Competes for a Common Phosphatidylethanolamine Pool with Major Cellular PE-Consuming Pathways in Saccharomyces cerevisiae. Genetics 199 (2) 475-485.
  • Wachowicz, Paulina; Chasapi, Anastasia; Krapp, Andrea; Cano del Rosario, Elena; Schmitter, Daniel; Sage, Daniel; Unser, Michael; Xenarios, Ioannis; Rougemont, Jacques; Simanis, Viesturs (2015) Analysis of S. pombe SIN protein association to the SPB reveals two genetically separable states of the SIN. J. Cell Sci. 128 (4) 741-754.
  • Mitchell, Alex; Chang, Hsin-Yu; Daugherty, Louise; Fraser, Matthew; Hunter, Sarah; Lopez, Rodrigo; McAnulla, Craig; McMenamin, Conor; Nuka, Gift; Pesseat, Sebastien; Sangrador-Vegas, Amaia; Scheremetjew, Maxim; Rato, Claudia; Yong, Siew-Yit; Bateman, Alex; Punta, Marco; Attwood, Teresa K.; Sigrist, Christian J. A.; Redaschi, Nicole; Rivoire, Catherine; Xenarios, Ioannis; Kahn, Daniel; Guyot, Dominique; Bork, Peer; Letunic, Ivica; Gough, Julian; Oates, Matt; Haft, Daniel; Huang, Hongzhan; Natale, Darren A.; Wu, Cathy H.; Orengo, Christine; Sillitoe, Ian; Mi, Huaiyu; Thomas, Paul D.; Finn, Robert D. (2015) The InterPro protein families database: the classification resource after 15 years. Nucleic Acids Res. 43 (D1) D213-D221.
  • The Gene Ontology Consortium*, (2015) Gene Ontology Consortium: going forward. Nucleic Acids Res. 43 (D1) D1049-D1056.
  • Pedruzzi, Ivo; Rivoire, Catherine; Auchincloss, Andrea H.; Coudert, Elisabeth; Keller, Guillaume; de Castro, Edouard; Baratin, Delphine; Cuche, Béatrice A.; Bougueleret, Lydie; Poux, Sylvain; Redaschi, Nicole; Xenarios, Ioannis; Bridge, Alan (2015) HAMAP in 2015: updates to the protein family classification and annotation system. Nucleic Acids Res. 43 (D1) D1064-D1070.
  • Morgat, Anne; Axelsen, Kristian B.; Lombardot, Thierry; Alcántara, Rafael; Aimo, Lucila; Zerara, Mohamed; Niknejad, Anne; Belda, Eugeni; Hyka-Nouspikel, Nevila; Coudert, Elisabeth; Redaschi, Nicole; Bougueleret, Lydie; Steinbeck, Christoph; Xenarios, Ioannis; Bridge, Alan (2015) Updates in Rhea—a manually curated resource of biochemical reactions. Nucleic Acids Res. 43 (D1) D459-D464.
  • Ounzain, Samir; Micheletti, Rudi; Beckmann, Tal; Schroen, Blanche; Alexanian, Michael; Pezzuto, Iole; Crippa, Stefania; Nemir, Mohamed; Sarre, Alexandre; Johnson, Rory; Dauvillier, Jérôme; Burdet, Frédéric; Ibberson, Mark; Guigó, Roderic; Xenarios, Ioannis; Heymans, Stephane; Pedrazzini, Thierry (2015) Genome-wide profiling of the cardiac transcriptome after myocardial infarction identifies novel heart-specific long non-coding RNAs. Eur. Heart J. 36 (6) 353-368.

2014

  • Loizides-Mangold, Ursula; Clément, Sophie; Alfonso-Garcia, Alba; Branche, Emilie; Conzelmann, Stéphanie; Parisot, Clotilde; Potma, Eric O.; Riezman, Howard; Negro, Francesco; Jhaveri, Ravi (2014) HCV 3a Core Protein Increases Lipid Droplet Cholesteryl Ester Content via a Mechanism Dependent on Sphingolipid Biosynthesis. PLoS ONE 9 (12) e115309.
  • Boeke, Dominik; Trautmann, Susanne; Meurer, Matthias; Wachsmuth, Malte; Godlee, Camilla; Knop, Michael; Kaksonen, Marko (2014) Quantification of cytosolic interactions identifies Ede1 oligomers as key organizers of endocytosis. Mol. Syst. Biol. 10 (11) 756-756.
  • Jaensch, Nina; Corrêa, Ivan R.; Watanabe, Reika (2014) Stable Cell Surface Expression of GPI-Anchored Proteins, but not Intracellular Transport, Depends on their Fatty Acid Structure. Traffic 15 (12) 1305-1329.
  • Rodius, Sophie; Nazarov, Petr V.; Nepomuceno-Chamorro, Isabel A.; Jeanty, Céline; González-Rosa, Juan; Ibberson, Mark; da Costa, Ricardo M.; Xenarios, Ioannis; Mercader, Nadia; Azuaje, Francisco (2014) Transcriptional response to cardiac injury in the zebrafish: systematic identification of genes with highly concordant activity across in vivo models. BMC Genomics 15:852.
  • Dornbusch, Tino; Michaud, Olivier; Xenarios, Ioannis; Fankhauser, Christian (2014) Differentially Phased Leaf Growth and Movements in Arabidopsis Depend on Coordinated Circadian and Light Regulation. Plant Cell 26 (10) 3911-3921.
  • Merrifield, Christien J.; Kaksonen, Marko (2014) Endocytic Accessory Factors and Regulation of Clathrin-Mediated Endocytosis. Cold Spring Harbor Perspect. Biol. 6 (11) a016733.
  • Roux, Aurélien (2014) Reaching a consensus on the mechanism of dynamin?. F1000Prime Rep. 6:86.
  • da Silveira dos Santos, Aline Xavier; Riezman, Isabelle; Aguilera-Romero, Maria-Auxiliadora; David, Fabrice; Piccolis, Manuele; Loewith, Robbie; Schaad, Olivier; Riezman, Howard (2014) Systematic lipidomic analysis of yeast protein kinase and phosphatase mutants reveals novel insights into regulation of lipid homeostasis. Mol. Biol. Cell 25 (20) 3234-3246.
  • Seguin-Estevez, Queralt; Dunand-Sauthier, Isabelle; Lemeille, Sylvain; Iseli, Christian; Ibberson, Mark; Ioannidis, Vassilios; Schmid, Christoph D.; Rousseau, Philippe; Barras, Emmanuèle; Geinoz, Antoine; Xenarios, Ioannis; Acha-Orbea, Hans; Reith, Walter (2014) Extensive remodeling of DC function by rapid maturation-induced transcriptional silencing. Nucleic Acids Res. 42 (15) 9641-9655.
  • Rausell, Antonio; Mohammadi, Pejman; McLaren, Paul J.; Bartha, Istvan; Xenarios, Ioannis; Fellay, Jacques; Telenti, Amalio; Quintana-Murci, Lluis (2014) Analysis of Stop-Gain and Frameshift Variants in Human Innate Immunity Genes. PLoS Comput. Biol. 10 (7) e1003757.
  • Griss, Johannes; Jones, Andrew R.; Sachsenberg, Timo; Walzer, Mathias; Gatto, Laurent; Hartler, Jürgen; Thallinger, Gerhard G.; Salek, Reza M.; Steinbeck, Christoph; Neuhauser, Nadin; Cox, Jürgen; Neumann, Steffen; Fan, Jun; Reisinger, Florian; Xu, Qing-Wei; del Toro, Noemi; Perez-Riverol, Yasset; Ghali, Fawaz; Bandeira, Nuno; Xenarios, Ioannis; Kohlbacher, Oliver; Vizcaino, Juan Antonio; Hermjakob, Henning (2014) The mzTab Data Exchange Format: Communicating Mass-spectrometry-based Proteomics and Metabolomics Experimental Results to a Wider Audience. Mol. Cell. Proteomics 13 (10) 2765-2775.
  • Famiglietti, Maria Livia; Estreicher, Anne; Gos, Arnaud; Bolleman, Jerven; Géhant, Sébastien; Breuza, Lionel; Bridge, Alan; Poux, Sylvain; Redaschi, Nicole; Bougueleret, Lydie; Xenarios, Ioannis (2014) Genetic Variations and Diseases in UniProtKB/Swiss-Prot: The Ins and Outs of Expert Manual Curation. Hum. Mutat. 35 (8) 927-935.
  • Roppolo, Daniele; Boeckmann, Brigitte; Pfister, Alexandre; Boutet, Emmanuel; Rubio, Maria C.; Denervaud-Tendon, Valerie; Vermeer, Joop E. M.; Gheyselinck, Jacqueline; Xenarios, Ioannis; Geldner, Niko (2014) Functional and Evolutionary Analysis of the CASPARIAN STRIP MEMBRANE DOMAIN PROTEIN Family. Plant Physiol. 165 (4) 1709-1722.
  • Crouse, Josh; Bedenikovic, Gregor; Wiesel, Melanie; Ibberson, Mark; Xenarios, Ioannis; Von Laer, Dorothee; Kalinke, Ulrich; Vivier, Eric; Jonjic, Stipan; Oxenius, Annette (2014) Type I Interferons Protect T Cells against NK Cell Attack Mediated by the Activating Receptor NCR1. Immunity 40 (6) 961-973.
  • Xiol, Jordi; Spinelli, Pietro; Laussmann, Maike A.; Homolka, David; Yang, Zhaolin; Cora, Elisa; Couté, Yohann; Conn, Simon; Kadlec, Jan; Sachidanandam, Ravi; Kaksonen, Marko; Cusack, Stephen; Ephrussi, Anne; Pillai, Ramesh S. (2014) RNA Clamping by Vasa Assembles a piRNA Amplifier Complex on Transposon Transcripts. Cell 157 (7) 1698-1711.
  • Stockinger, Heinz; Altenhoff, Adrian M.; Arnold, Konstantin; Bairoch, Amos; Bastian, Frederic; Bergmann, Sven; Bougueleret, Lydie; Bucher, Philipp; Delorenzi, Mauro; Lane, Lydie; Le Mercier, Philippe; Lisacek, Frederique; Michielin, Olivier; Palagi, Patricia M.; Rougemont, Jacques; Schwede, Torsten; von Mering, Christian; van Nimwegen, Erik; Walther, Daniel; Xenarios, Ioannis; Zavolan, Mihaela; Zdobnov, Evgeny M.; Zoete, Vincent; Appel, Ron D. (2014) Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support. Nucleic Acids Res. 42 (W1) W436-W441.
  • Marti-Solano, Maria; Birney, Ewan; Bril, Antoine; Pasqua, Oscar Della; Kitano, Hiroaki; Mons, Barend; Xenarios, Ioannis; Sanz, Ferran (2014) Integrative knowledge management to enhance pharmaceutical R&D. Nat. Rev. Drug Discov. 13 (4) 239-240.
  • Aumeier, C.; Kasdorf, B.; Gruber, M.; Busse, H.; Wiese, C. H.; Zink, W.; Graf, B. M.; Zausig, Y. A. (2014) Lipid emulsion pretreatment has different effects on mepivacaine and bupivacaine cardiac toxicity in an isolated rat heart model. Br. J. Anaesth. 112 (4) 735-741.
  • Rausell, Antonio; Mohammadi, Pejman; McLaren, Paul J.; Xenarios, Ioannis; Fellay, Jacques; Telenti, Amalio (2014) Analysis of stop-gain and frameshift variants in human innate immunity genes. bioRxiv, Bioinf..
  • Alfaiz, Ali Abdullah; Micale, Lucia; Mandriani, Barbara; Augello, Bartolomeo; Pellico, Maria Teresa; Chrast, Jacqueline; Xenarios, Ioannis; Zelante, Leopoldo; Merla, Giuseppe; Reymond, Alexandre (2014) TBC1D7 Mutations are Associated with Intellectual Disability, Macrocrania, Patellar Dislocation, and Celiac Disease. Hum. Mutat. 35 (4) 447-451.
  • Vizcaíno, Juan A.; Deutsch, Eric W.; Wang, Rui; Csordas, Attila; Reisinger, Florian; Ríos, Daniel; Dianes, José A.; Sun, Zhi; Farrah, Terry; Bandeira, Nuno; Binz, Pierre-Alain; Xenarios, Ioannis; Eisenacher, Martin; Mayer, Gerhard; Gatto, Laurent; Campos, Alex; Chalkley, Robert J.; Kraus, Hans-Joachim; Albar, Juan Pablo; Martinez-Bartolomé, Salvador; Apweiler, Rolf; Omenn, Gilbert S.; Martens, Lennart; Jones, Andrew R.; Hermjakob, Henning (2014) ProteomeXchange provides globally coordinated proteomics data submission and dissemination. Nat. Biotechnol. 32 (3) 223-226.
  • Blaskovic, Sanja; Adibekian, Alexander; Blanc, Mathieu; van der Goot*, Gisou F. (2014) Mechanistic effects of protein palmitoylation and the cellular consequences thereof. Chem. Phys. Lipids 180 44-52.
  • Brach, Thorsten; Godlee, Camilla; Moeller-Hansen, Iben; Boeke, Dominik; Kaksonen, Marko (2014) The Initiation of Clathrin-Mediated Endocytosis Is Mechanistically Highly Flexible. Curr. Biol. 24 (5) 548-554.
  • Sankar, Martial; Nieminen, Kaisa; Ragni, Laura; Xenarios, Ioannis; Hardtke, Christian S (2014) Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth. eLife 3 e01567.
  • Lakshminarayanan, Rajamani; Liu, Shouping; Li, Jianguo; Nandhakumar, Muruganantham; Aung, Thet Tun; Goh, Eunice; Chang, Jamie Ya Ting; Saraswathi, Padhmanaban; Tang, Charles; Safie, Siti Radiah Binte; Lin, Lim Yih; Riezman, Howard; Lei, Zhou; Verma, Chandra S.; Beuerman, Roger W.; Khan, Rizwan H. (2014) Synthetic Multivalent Antifungal Peptides Effective against Fungi. PLoS ONE 9 (2) e87730.
  • Prifti, Efthymia; Reymond, Luc; Umebayashi, Miwa; Hovius, Ruud; Riezman, Howard; Johnsson, Kai (2014) A Fluorogenic Probe for SNAP-Tagged Plasma Membrane Proteins Based on the Solvatochromic Molecule Nile Red. ACS Chem. Biol. 9 (3) 606-612.
  • Kajiwara, Kentaro; Ikeda, Atsuko; Aguilera-Romero, Auxiliadora; Castillon, Guillaume A.; Kagiwada, Satoshi; Hanada, Kentaro; Riezman, Howard; Muniz, Manuel; Funato, Kouichi (2014) Osh proteins regulate COPII-mediated vesicular transport of ceramide from the endoplasmic reticulum in budding yeast. J. Cell Sci. 127 (2) 376-387.
  • Aguilera-Romero, Auxiliadora; Gehin, Charlotte; Riezman, Howard (2014) Sphingolipid homeostasis in the web of metabolic routes. Biochim. Biophys. Acta, Mol. Cell Biol. Lipids 1841 (5) 647-656.

2013

  • Cohen, Yifat; Megyeri, Márton; Chen, Oscar C. W.; Condomitti, Giuseppe; Riezman, Isabelle; Loizides-Mangold, Ursula; Abdul-Sada, Alaa; Rimon, Nitzan; Riezman, Howard; Platt, Frances M.; Futerman, Anthony H.; Schuldiner, Maya; Michnick, Stephen W. (2013) The Yeast P5 Type ATPase, Spf1, Regulates Manganese Transport into the Endoplasmic Reticulum. PLoS ONE 8 (12) e85519.
  • Godlee, Camilla; Kaksonen, Marko (2013) From uncertain beginnings: Initiation mechanisms of clathrin-mediated endocytosis. The Journal of Cell Biology 104 (10) 3793-725.
  • Zimmermann, Christine; Santos, Aline; Gable, Kenneth; Epstein, Sharon; Gururaj, Charulatha; Chymkowitch, Pierre; Pultz, Dennis; Rødkær, Steven V.; Clay, Lorena; Bjørås, Magnar; Barral, Yves; Chang, Amy; Færgeman, Nils J.; Dunn, Teresa M.; Riezman, Howard; Enserink, Jorrit M. (2013) TORC1 Inhibits GSK3-Mediated Elo2 Phosphorylation to Regulate Very Long Chain Fatty Acid Synthesis and Autophagy. Cell Rep. 5 (4) 1036-1046.
  • Ding, Jun; Loizides-Mangold, Ursula; Rando, Gianpaolo; Zoete, Vincent; Michielin, Olivier; Reddy, Janardan K.; Wahli, Walter; Riezman, Howard; Thorens, Bernard (2013) The Peroxisomal Enzyme L-PBE Is Required to Prevent the Dietary Toxicity of Medium-Chain Fatty Acids. Cell Rep. 5 (1) 248-258.
  • Lindberg, Lina; Santos, Aline XS.; Riezman, Howard; Olsson, Lisbeth; Bettiga, Maurizio; Oresic, Matej (2013) Lipidomic Profiling of Saccharomyces cerevisiae and Zygosaccharomyces bailii Reveals Critical Changes in Lipid Composition in Response to Acetic Acid Stress. PLoS ONE 8 (9) e73936.
  • Maeda, Kenji; Anand, Kanchan; Chiapparino, Antonella; Kumar, Arun; Poletto, Mattia; Kaksonen, Marko; Gavin, Anne-Claude (2013) Interactome map uncovers phosphatidylserine transport by oxysterol-binding proteins. Nature 501 (7466) 257-261.
  • Kemp, Louise E.; Rusch, Marion; Adibekian, Alexander; Bullen, Hayley E.; Graindorge, Arnault; Freymond, Céline; Rottmann, Matthias; Braun-Breton, Catherine; Baumeister, Stefan; Porfetye, Arthur T.; Vetter, Ingrid R.; Hedberg, Christian; Soldati-Favre*, Dominique (2013) Characterization of a Serine Hydrolase Targeted by Acyl-protein Thioesterase Inhibitors in Toxoplasma gondii. J. Biol. Chem. 288 (38) 27002-27018.
  • Bonzanni, Nicola; Garg, Abhishek; Feenstra, K. Anton; Schutte, Judith; Kinston, Sarah; Miranda-Saavedra, Diego; Heringa, Jaap; Xenarios, Ioannis; Gottgens, Berthold (2013) Hard-wired heterogeneity in blood stem cells revealed using a dynamic regulatory network model. Bioinformatics 29 (13) i80-i88.
  • Gehin, Charlotte; Montenegro, Javier; Bang, Eun-Kyoung; Cajaraville, Ana; Takayama, Shota; Hirose, Hisaaki; Futaki, Shiroh; Matile, Stefan; Riezman, Howard (2013) Dynamic Amphiphile Libraries to Screen for the “Fragrant” Delivery of siRNA into HeLa Cells and Human Primary Fibroblasts. J. Am. Chem. Soc. 135 (25) 9295-9298.
  • Zufferey, Anne; Ibberson, Mark; Reny, Jean-Luc; Xenarios, Ioannis; Sanchez, Jean-Charles; Fontana, Pierre (2013) Unraveling modulators of platelet reactivity in cardiovascular patients using omics strategies: Towards a network biology paradigm. Transl. Proteomics 1 (1) 25-37.
  • Guex, Nicolas; Iseli, Christian; Syngelaki, Argyro; Deluen, Cécile; Pescia, Graziano; Nicolaides, Kypros H.; Xenarios, Ioannis; Conrad, Bernard (2013) A robust second-generation genome-wide test for fetal aneuploidy based on shotgun sequencing cell-free DNA in maternal blood. Prenatal Diagn. 33 (7) 707-710.
  • Gallego, Oriol; Specht, Tanja; Brach, Thorsten; Kumar, Arun; Gavin, Anne-Claude; Kaksonen, Marko; Keen, James (2013) Detection and Characterization of Protein Interactions In Vivo by a Simple Live-Cell Imaging Method. PLoS ONE 8 (5) e62195.
  • Schmitter, Daniel; Wachowicz, Paulina; Sage, Daniel; Chasapi, Anastasia; Xenarios, Ioannis; Simanis, Viesturs; Unser, Michael (2013) A 2D/3D image analysis system to track fluorescently labeled structures in rod-shaped cells: application to measure spindle pole asymmetry during mitosis. Cell Div. 8:6.
  • Castillon, Guillaume Alain; Michon, Laetitia; Watanabe, Reika (2013) Apical sorting of lysoGPI-anchored proteins occurs independent of association with detergent-resistant membranes but dependent on their N-glycosylation. Mol. Biol. Cell 24 (12) 2021-2033.
  • Topf, Florian; Schvartz, Domitille; Gaudet, Pascale; Priego-Capote, F.; Zufferey, Anne; Turck, Natacha; Binz, Pierre-Alain; Fontana, Pierre; Wiederkehr, Andreas; Finamore, Francesco; Xenarios, Ioannis; Goodlett, D.; Kussmann, M.; Bergsten, P.; Sanchez, Jean-Charles (2013) The Human Diabetes Proteome Project (HDPP): From network biology to targets for therapies and prevention. Transl. Proteomics 1 (1) 3-11.
  • Zhang, Xuezhi; Krause, Karl-Heinz; Xenarios, Ioannis; Soldati, Thierry; Boeckmann, Brigitte; Haslam, Niall James (2013) Evolution of the Ferric Reductase Domain (FRD) Superfamily: Modularity, Functional Diversification, and Signature Motifs. PLoS ONE 8 (3) e58126.
  • Chiodini, Florence; Matter-Sadzinski, Lidia; Rodrigues, Tania; Skowronska-Krawczyk, Dorota; Brodier, Laurent; Schaad, Olivier; Bauer, Christoph; Ballivet, Marc; Matter, Jean-Marc (2013) A Positive Feedback Loop between ATOH7 and a Notch Effector Regulates Cell-Cycle Progression and Neurogenesis in the Retina. Cell Rep. 3 (3) 796-807.
  • Satoh, Takunori; Inagaki, Tsuyoshi; Liu, Ziguang; Watanabe, Reika; Satoh, Akiko K. (2013) GPI biosynthesis is essential for rhodopsin sorting at the trans-Golgi network in Drosophila photoreceptors. Development 140 (2) 385-394.
  • Epstein, Sharon; Riezman, Howard (2013) Sphingolipid signaling in yeast: potential implications for understanding disease. Front. Biosci., Elite Ed. 5 97-108.
  • Bugliani, Marco; Liechti, Robin; Cheon, Hwanju; Suleiman, Mara; Marselli, Lorella; Kirkpatrick, Clare; Filipponi, Franco; Boggi, Ugo; Xenarios, Ioannis; Syed, Farooq; Ladriere, Laurence; Wollheim, Claes; Lee, Myung-Shik; Marchetti, Piero (2013) Microarray analysis of isolated human islet transcriptome in type 2 diabetes and the role of the ubiquitin–proteasome system in pancreatic beta cell dysfunction. Molecular and Cellular Endocrinology 367 (1-2) 1-10.
  • Castanon, Irinka; Abrami, Laurence; Holtzer, Laurent; Heisenberg, Carl-Philipp; van der Goot, F. Gisou; González-Gaitán, Marcos (2013) Anthrax toxin receptor 2a controls mitotic spindle positioning. Nat. Cell Biol. 15 (1) 28-39.
  • Cox, Jos A. (2013) Divers Models of Divalent Cation Interaction to Calcium-Binding Proteins: Techniques and Anthology. Calcium-Binding Proteins and RAGE Volume 963Ed. Heizmann, Claus W.Methods in Molecular Biology. Springer. 15-35.

2012

  • Friedrich, Nikolas; Hagedorn, Monica; Soldati-Favre, Dominique; Soldati, Thierry (2012) Prison Break: Pathogens' Strategies To Egress from Host Cells. Microbiol. Mol. Biol. Rev. 76 (4) 707-720.
  • Le Martelot, Gwendal; Canella, Donatella; Symul, Laura; Migliavacca, Eugenia; Gilardi, Federica; Liechti, Robin; Martin, Olivier; Harshman, Keith; Delorenzi, Mauro; Desvergne, Béatrice; Herr, Winship; Deplancke, Bart; Schibler, Ueli; Rougemont, Jacques; Guex, Nicolas; Hernandez, Nouria; Naef, Felix; the CycliX consortium, (2012) Genome-Wide RNA Polymerase II Profiles and RNA Accumulation Reveal Kinetics of Transcription and Associated Epigenetic Changes During Diurnal Cycles. PLoS Biol. 10 (11) e1001442.
  • Fernandez, Paula; Solenthaler, Max; Spertini, Olivier; Quarroz, Stephane; Rovo, Alicia; Lovey, Pierre-Yves; Leoncini, Leda; Ruault-Jungblut, Sylvie; D?Asaro, Mathilde; Schaad, Olivier; Docquier, Mylène; Descombes, Patrick; Matthes, Thomas; Starczynowski, Daniel T. (2012) Using Digital RNA Counting and Flow Cytometry to Compare mRNA with Protein Expression in Acute Leukemias. PLoS ONE 7 (11) e49010.
  • Morlot, Sandrine; Galli, Valentina; Klein, Marius; Chiaruttini, Nicolas; Manzi, John; Humbert, Frédéric; Dinis, Luis; Lenz, Martin; Cappello, Giovanni; Roux, Aurélien (2012) Membrane Shape at the Edge of the Dynamin Helix Sets Location and Duration of the Fission Reaction. Cell 151 (3) 619-629.
  • Dieckmann, Régis; Gueho, Aurélie; Monroy, Roger; Ruppert, Thomas; Bloomfield, Gareth; Soldati, Thierry (2012) The Balance in the Delivery of ER Components and the Vacuolar Proton Pump to the Phagosome Depends on Myosin IK in Dictyostelium. Mol. Cell. Proteomics 11 (10) 886-900.
  • Skruzny, Michal; Brach, Thorsten; Ciuffa, Rodolfo; Rybina, Sofia; Wachsmuth, Malte; Kaksonen, Marko (2012) Molecular basis for coupling the plasma membrane to the actin cytoskeleton during clathrin-mediated endocytosis. Proc. Natl. Acad. Sci. U. S. A. 109 (38) E2533-E2542.
  • Kicheva, Anna; Bollenbach, Tobias; Wartlick, Ortrud; Jülicher, Frank; Gonzalez-Gaitan, Marcos (2012) Investigating the principles of morphogen gradient formation: from tissues to cells. Curr. Opin. Genet. Dev. 22 (6) 527-532.
  • Kukulski, Wanda; Schorb, Martin; Kaksonen, Marko; Briggs, John A.G. (2012) Plasma Membrane Reshaping during Endocytosis Is Revealed by Time-Resolved Electron Tomography. Cell 150 (3) 508-520.
  • Kukulski, Wanda Schorb, Martin Welsch, Sonja Picco, Andrea Kaksonen, Marko Briggs, John A.G. (2012) Precise, Correlated Fluorescence Microscopy and Electron Tomography of Lowicryl Sections Using Fluorescent Fiducial Markers. Correlative Light and Electron Microscopy Volume 111 (Chapter 13)Ed. Müller-Reichert, Thomas Verkade, PaulMethods in Cell Biology. Elsevier. 235-257.
  • Santos, Aline X. S.; Riezman, Howard (2012) Yeast as a model system for studying lipid homeostasis and function. FEBS Lett. 586 (18) 2858-2867.
  • Kornmann, Benoît; Roux, Aurélien (2012) Lipids as organizers of cell membranes. EMBO Rep. 13 (8) 667-669.
  • Gruenberg, Jean (2012) An MBoC Favorite: Functional interactions between sphingolipids and sterols in biological membranes regulating cell physiology. Mol. Biol. Cell 23 (13) 2402.
  • Jarmoszewicz, Katarzyna; Łukasiak, Katarzyna; Riezman, Howard; Kaminska, Joanna; Polymenis, Michael (2012) Rsp5 Ubiquitin Ligase Is Required for Protein Trafficking in Saccharomyces cerevisiae COPI Mutants. PLoS ONE 7 (6) e39582.
  • Hornitschek, Patricia; Kohnen, Markus V.; Lorrain, Séverine; Rougemont, Jacques; Ljung, Karin; López-Vidriero, Irene; Franco-Zorrilla, José M.; Solano, Roberto; Trevisan, Martine; Pradervand, Sylvain; Xenarios, Ioannis; Fankhauser, Christian (2012) Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling. Plant J. 71 (5) 699-711.
  • Pons, Véronique; Ustunel, Cansel; Rolland, Corinne; Torti, Eleonora; Parton, Robert G.; Gruenberg, Jean; Johannes, Ludger (2012) SNX12 Role in Endosome Membrane Transport. PLoS ONE 7 (6) e38949.
  • Kobayashi, Tomonori; Komatsu, Toru; Kamiya, Mako; Campos, Cláudia; González-Gaitán, Marcos; Terai, Takuya; Hanaoka, Kenjiro; Nagano, Tetsuo; Urano, Yasuteru (2012) Highly Activatable and Environment-Insensitive Optical Highlighters for Selective Spatiotemporal Imaging of Target Proteins. J. Am. Chem. Soc. 134 (27) 11153-11160.
  • Tollis, Sylvain Gopaldass, Navin Soldati, Thierry Endres, Robert G. (2012) How One Cell Eats Another: Principles of Phagocytosis. Systems Microbiology: Current Topics and Applications (Chapter 6)Ed. Robertson, Brian D. Wren, Brendan W.Caister Academic Press. (Norfolk). 97-128.
  • Artimo, Panu; Jonnalagedda, Manohar; Arnold, Konstantin; Baratin, Delphine; Csardi, Gabor; de Castro, Edouard; Duvaud, Séverine; Flegel, Volker; Fortier, Arnaud; Gasteiger, Elisabeth; Grosdidier, Aurélien; Hernandez, Céline; Ioannidis, Vassilios; Kuznetsov, Dmitry; Liechti, Robin; Moretti, Sébastien; Mostaguir, Khaled; Redaschi, Nicole; Rossier, Grégoire; Xenarios, Ioannis; Stockinger, Heinz (2012) ExPASy: SIB bioinformatics resource portal. Nucleic Acids Res. 40 (W1) W597-W603.
  • Loizides-Mangold, Ursula; David, Fabrice P. A.; Nesatyy, Victor J.; Kinoshita, Taroh; Riezman, Howard (2012) Glycosylphosphatidylinositol anchors regulate glycosphingolipid levels. J. Lipid Res. 53 (8) 1522-1534.
  • Epstein, Sharon; Castillon, Guillaume A.; Qin, Yongmei; Riezman, Howard (2012) An essential function of sphingolipids in yeast cell division. Mol. Microbiol. 84 (6) 1018-1032.
  • Snijder, Berend; Sacher, Raphael; Rämö, Pauli; Liberali, Prisca; Mench, Karin; Wolfrum, Nina; Burleigh, Laura; Scott, Cameron C.; Verheije, Monique H.; Mercer, Jason; Moese, Stefan; Heger, Thomas; Theusner, Kristina; Jurgeit, Andreas; Lamparter, David; Balistreri, Giuseppe; Schelhaas, Mario; De Haan, Cornelis A. M.; Marjomäki, Varpu; Hyypiä, Timo; Rottier, Peter J. M.; Sodeik, Beate; Marsh, Mark; Gruenberg, Jean; Amara, Ali; Greber, Urs; Helenius, Ari; Pelkmans, Lucas (2012) Single-cell analysis of population context advances RNAi screening at multiple levels. Mol. Syst. Biol. 8:579 18 pp.
  • Soldati, Thierry; Neyrolles, Olivier (2012) Mycobacteria and the Intraphagosomal Environment: Take It With a Pinch of Salt(s)!. Traffic 13 (8) 1042-1052.
  • Berchtold, Doris; Piccolis, Manuele; Chiaruttini, Nicolas; Riezman, Isabelle; Riezman, Howard; Roux, Aurélien; Walther, Tobias C.; Loewith, Robbie (2012) Plasma membrane stress induces relocalization of Slm proteins and activation of TORC2 to promote sphingolipid synthesis. Nat. Cell Biol. 14 (5) 542-547.
  • Alonso Doval, David; Fin, Andrea; Takahashi-Umebayashi, Miwa; Riezman, Howard; Roux, Aurelien; Sakai, Naomi; Matile, Stefan (2012) Amphiphilic Dynamic NDI and PDI Probes:  Imaging Microdomains in Giant Unilamellar Vesicles. Org. Biomol. Chem. 10 (30) 6087-6093.
  • Klionsky, Daniel J.; Abdalla, Fabio C.; Abeliovich, Hagai; Abraham, Robert T.; Acevedo-Arozena, Abraham; Adeli, Khosrow; Agholme, Lotta; Agnello, Maria; Agostinis, Patrizia; Aguirre-Ghiso, Julio A.; Ahn, Hyung Jun; Ait-Mohamed, Ouardia; Ait-Si-Ali, Slimane; Akematsu, Takahiko; Akira, Shizuo; Al-Younes, Hesham M.; Al-Zeer, Munir A.; Albert, Matthew L.; Albin, Roger L.; Alegre-Abarrategui, Javier; Aleo, Maria Francesca; Alirezaei, Mehrdad; Almasan, Alexandru; Almonte-Becerril, Maylin; Amano, Atsuo; Amaravadi, Ravi K.; Amarnath, Shoba; Amer, Amal O.; Andrieu-Abadie, Nathalie; Anantharam, Vellareddy; Ann, David K.; Anoopkumar-Dukie, Shailendra; Aoki, Hiroshi; Apostolova, Nadezda; Arancia, Giuseppe; Aris, John P.; Asanuma, Katsuhiko; Asare, Nana Y.O.; Ashida, Hisashi; Askanas, Valerie; Askew, David S.; Auberger, Patrick; Baba, Misuzu; Backues, Steven K.; Baehrecke, Eric H.; Bahr, Ben A.; Bai, Xue-Yuan; Bailly, Yannick; Baiocchi, Robert; Baldini, Giulia; Balduini, Walter; Ballabio, Andrea; Bamber, Bruce A.; Bampton, Edward T.W.; Juhász, Gábor; Bartholomew, Clinton R.; Bassham, Diane C.; Bast, Robert C.; Batoko, Henri; Bay, Boon-Huat; Beau, Isabelle; Béchet, Daniel M.; Begley, Thomas J.; Behl, Christian; Behrends, Christian; Bekri, Soumeya; Bellaire, Bryan; Bendall, Linda J.; Benetti, Luca; Berliocchi, Laura; Bernardi, Henri; Bernassola, Francesca; Besteiro, Sébastien; Bhatia-Kissova, Ingrid; Bi, Xiaoning; Biard-Piechaczyk, Martine; Blum, Janice S.; Boise, Lawrence H.; Bonaldo, Paolo; Boone, David L.; Bornhauser, Beat C.; Bortoluci, Karina R.; Bossis, Ioannis; Bost, Frédéric; Bourquin, Jean-Pierre; Boya, Patricia; Boyer-Guittaut, Michaël; Bozhkov, Peter V.; Brady, Nathan R; Brancolini, Claudio; Brech, Andreas; Brenman, Jay E.; Brennand, Ana; Bresnick, Emery H.; Brest, Patrick; Bridges, Dave; Bristol, Molly L.; Brookes, Paul S.; Brown, Eric J.; Brumell, John H.; Brunetti-Pierri, Nicola; Brunk, Ulf T.; Bulman, Dennis E.; Bultman, Scott J.; Bultynck, Geert; Burbulla, Lena F.; Bursch, Wilfried; Butchar, Jonathan P.; Buzgariu, Wanda; Bydlowski, Sergio P.; Cadwell, Ken; Cahová, Monika; Cai, Dongsheng; Cai, Jiyang; Cai, Qian; Calabretta, Bruno; Calvo-Garrido, Javier; Camougrand, Nadine; Campanella, Michelangelo; Campos-Salinas, Jenny; Candi, Eleonora; Cao, Lizhi; Caplan, Allan B.; Carding, Simon R.; Cardoso, Sandra M.; Carew, Jennifer S.; Carlin, Cathleen R.; Carmignac, Virginie; Carneiro, Leticia A.M.; Carra, Serena; Caruso, Rosario A.; Casari, Giorgio; Casas, Caty; Castino, Roberta; Cebollero, Eduardo; Cecconi, Francesco; Celli, Jean; Chaachouay, Hassan; Chae, Han-Jung; Chai, Chee-Yin; Chan, David C.; Chan, Edmond Y.; Chang, Raymond Chuen-Chung; Che, Chi-Ming; Chen, Ching-Chow; Chen, Guang-Chao; Chen, Guo-Qiang; Chen, Min; Chen, Quan; Chen, Steve S.-L.; Chen, WenLi; Chen, Xi; Chen, Xiangmei; Chen, Xiequn; Chen, Ye-Guang; Chen, Yingyu; Chen, Yongqiang; Chen, Yu-Jen; Chen, Zhixiang; Cheng, Alan; Cheng, Christopher H.K.; Cheng, Yan; Cheong, Heesun; Cheong, Jae-Ho; Cherry, Sara; Chess-Williams, Russ; Cheung, Zelda H.; Chevet, Eric; Chiang, Hui-Ling; Chiarelli, Roberto; Chiba, Tomoki; Chin, Lih-Shen; Chiou, Shih-Hwa; Chisari, Francis V.; Cho, Chi Hin; Cho, Dong-Hyung; Choi, Augustine M.K.; Choi, DooSeok; Choi, Kyeong Sook; Choi, Mary E.; Chouaib, Salem; Choubey, Divaker; Choubey, Vinay; Chu, Charleen T.; Chuang, Tsung-Hsien; Chueh, Sheau-Huei; Chun, Taehoon; Chwae, Yong-Joon; Chye, Mee-Len; Ciarcia, Roberto; Ciriolo, Maria R.; Clague, Michael J.; Clark, Robert S.B.; Clarke, Peter G.H.; Clarke, Robert; Codogno, Patrice; Coller, Hilary A.; Colombo, María I.; Comincini, Sergio; Condello, Maria; Condorelli, Fabrizio; Cookson, Mark R.; Coombs, Graham H.; Coppens, Isabelle; Corbalan, Ramon; Cossart, Pascale; Costelli, Paola; Costes, Safia; Coto-Montes, Ana; Couve, Eduardo; Coxon, Fraser P.; Cregg, James M.; Crespo, José L.; Cronjé, Marianne J.; Cuervo, Ana Maria; Cullen, Joseph J.; Czaja, Mark J.; D\'Amelio, Marcello; Darfeuille-Michaud, Arlette; Davids, Lester M.; Davies, Faith E.; De Felici, Massimo; de Groot, John F.; de Haan, Cornelis A.M.; De Martino, Luisa; De Milito, Angelo; De Tata, Vincenzo; Debnath, Jayanta; Degterev, Alexei; Dehay, Benjamin; Delbridge, Lea M.D.; Demarchi, Francesca; Deng, Yi Zhen; Dengjel, Jörn; Dent, Paul; Denton, Donna; Deretic, Vojo; Desai, Shyamal D.; Devenish, Rodney J.; Di Gioacchino, Mario; Di Paolo, Gilbert; Di Pietro, Chiara; Díaz-Araya, Guillermo; Díaz-Laviada, Inés; Diaz-Meco, Maria T.; Diaz-Nido, Javier; Dikic, Ivan; Dinesh-Kumar, Savithramma P.; Ding, Wen-Xing; Distelhorst, Clark W.; Diwan, Abhinav; Djavaheri-Mergny, Mojgan; Dokudovskaya, Svetlana; Dong, Zheng; Dorsey, Frank C.; Dosenko, Victor; Dowling, James J.; Doxsey, Stephen; Dreux, Marlène; Drew, Mark E.; Duan, Qiuhong; Duchosal, Michel A.; Duff, Karen E.; Dugail, Isabelle; Durbeej, Madeleine; Duszenko, Michael; Edelstein, Charles L.; Edinger, Aimee L.; Egea, Gustavo; Eichinger, Ludwig; Eissa, N. Tony; Ekmekcioglu, Suhendan; El-Deiry, Wafik S.; Elazar, Zvulun; Elgendy, Mohamed; Ellerby, Lisa M.; Eng, Kai Er; Engelbrecht, Anna-Mart; Engelender, Simone; Erenpreisa, Jekaterina; Escalante, Ricardo; Esclatine, Audrey; Eskelinen, Eeva-Liisa; Espert, Lucile; Espina, Virginia; Fan, Huizhou; Fan, Jia; Fan, Qi-Wen; Fan, Zhen; Fang, Shengyun; Fang, Yongqi; Fanto, Manolis; Fanzani, Alessandro; Farkas, Thomas; Farre, Jean-Claude; Faure, Mathias; Fechheimer, Marcus; Feng, Carl G.; Feng, Jian; Feng, Qili; Feng, Youji; Fésüs, László; Feuer, Ralph; Figueiredo-Pereira, Maria E.; Fimia, Gian Maria; Fingar, Diane C.; Finkbeiner, Steven; Finkel, Toren; Finley, Kim D.; Fiorito, Filomena; Fisher, Edward A.; Fisher, Paul B.; Flajolet, Marc; Florez-McClure, Maria L.; Florio, Salvatore; Fon, Edward A.; Fornai, Francesco; Fortunato, Franco; Fotedar, Rati; Fowler, Daniel H.; Fox, Howard S.; Franco, Rodrigo; Frankel, Lisa B.; Fransen, Marc; Fuentes, José M.; Fueyo, Juan; Fujii, Jun; Fujisaki, Kozo; Fujita, Eriko; Fukuda, Mitsunori; Furukawa, Ruth H.; Gaestel, Matthias; Gailly, Philippe; Gajewska, Malgorzata; Galliot, Brigitte; Galy, Vincent; Ganesh, Subramaniam; Ganetzky, Barry; Ganley, Ian G.; Gao, Fen-Biao; Gao, George F.; Gao, Jinming; Garcia, Lorena; Garcia-Manero, Guillermo; Garcia-Marcos, Mikel; Garmyn, Marjan; Gartel, Andrei L.; Gatti, Evelina; Gautel, Mathias; Gawriluk, Thomas R.; Gegg, Matthew E.; Geng, Jiefei; Germain, Marc; Gestwicki, Jason E.; Gewirtz, David A.; Ghavami, Saeid; Ghosh, Pradipta; Giammarioli, Anna M.; Giatromanolaki, Alexandra N.; Gibson, Spencer B.; Gilkerson, Robert W.; Ginger, Michael L.; Ginsberg, Henry N.; Golab, Jakub; Goligorsky, Michael S.; Golstein, Pierre; Gomez-Manzano, Candelaria; Goncu, Ebru; Gongora, Céline; Gonzalez, Claudio D.; Gonzalez, Ramon; González-Estévez, Cristina; González-Polo, Rosa Ana; Gonzalez-Rey, Elena; Gorbunov, Nikolai V.; Gorski, Sharon; Goruppi, Sandro; Gottlieb, Roberta A.; Gozuacik, Devrim; Granato, Giovanna Elvira; Grant, Gary D.; Green, Kim N.; Gregorc, Ales; Gros, Frédéric; Grose, Charles; Grunt, Thomas W.; Gual, Philippe; Guan, Jun-Lin; Guan, Kun-Liang; Guichard, Sylvie M.; Gukovskaya, Anna S.; Gukovsky, Ilya; Gunst, Jan; Gustafsson, Åsa B.; Halayko, Andrew J.; Hale, Amber N.; Halonen, Sandra K.; Hamasaki, Maho; Han, Feng; Han, Ting; Hancock, Michael K.; Hansen, Malene; Harada, Hisashi; Harada, Masaru; Hardt, Stefan E.; Harper, J. Wade; Harris, Adrian L.; Harris, James; Harris, Steven D.; Hashimoto, Makoto; Haspel, Jeffrey A.; Hayashi, Shin-ichiro; Hazelhurst, Lori A.; He, Congcong; He, You-Wen; Hébert, Marie-Josée; Heidenreich, Kim A.; Helfrich, Miep H.; Helgason, Gudmundur V.; Henske, Elizabeth P.; Herman, Brian; Herman, Paul K.; Hetz, Claudio; Hilfiker, Sabine; Hill, Joseph A.; Hocking, Lynne J.; Hofman, Paul; Hofmann, Thomas G.; Höhfeld, Jörg; Holyoake, Tessa L.; Hong, Ming-Huang; Hood, David A.; Hotamisligil, Gökhan S.; Houwerzijl, Ewout J.; Høyer-Hansen, Maria; Hu, Bingren; Hu, Chien-an A.; Hu, Hong-Ming; Hua, Ya; Huang, Canhua; Huang, Ju; Huang, Shengbing; Huang, Wei-Pang; Huber, Tobias B.; Huh, Won-Ki; Hung, Tai-Ho; Hupp, Ted R.; Hur, Gang Min; Hurley, James B.; Hussain, Sabah N.A.; Hussey, Patrick J.; Hwang, Jung Jin; Hwang, Seungmin; Ichihara, Atsuhiro; Ilkhanizadeh, Shirin; Inoki, Ken; Into, Takeshi; Iovane, Valentina; Iovanna, Juan L.; Ip, Nancy Y.; Isaka, Yoshitaka; Ishida, Hiroyuki; Isidoro, Ciro; Isobe, Ken-ichi; Iwasaki, Akiko; Izquierdo, Marta; Izumi, Yotaro; Jaakkola, Panu M.; Jäättelä, Marja; Jackson, George R.; Jackson, William T.; Janji, Bassam; Jendrach, Marina; Jeon, Ju-Hong; Jeung, Eui-Bae; Jiang, Hong; Jiang, Hongchi; Jiang, Jean X.; Jiang, Ming; Jiang, Qing; Jiang, Xuejun; Jiang, Xuejun; Jiménez, Alberto; Jin, Meiyan; Jin, Shengkan V.; Joe, Cheol O.; Johansen, Terje; Johnson, Daniel E.; Johnson, Gail V.W.; Jones, Nicola L.; Joseph, Bertrand; Joseph, Suresh K.; Joubert, Annie M.; Juhász, Gábor; Juillerat-Jeanneret, Lucienne; Jung, Chang Hwa; Jung, Yong-Keun; Kaarniranta, Kai; Kaasik, Allen; Kabuta, Tomohiro; Kadowaki, Motoni; Kågedal, Katarina; Kamada, Yoshiaki; Kaminskyy, Vitaliy O.; Kampinga, Harm H.; Kanamori, Hiromitsu; Kang, Chanhee; Kang, Khong Bee; Kang, Kwang Il; Kang, Rui; Kang, Yoon-A; Kanki, Tomotake; Kanneganti, Thirumala-Devi; Kanno, Haruo; Kanthasamy, Anumantha G.; Kanthasamy, Arthi; Karantza, Vassiliki; Kaushal, Gur P.; Kaushik, Susmita; Kawazoe, Yoshinori; Ke, Po-Yuan; Kehrl, John H.; Kelekar, Ameeta; Kerkhoff, Claus; Kessel, David H.; Khalil, Hany; Kiel, Jan A.K.W.; Kiger, Amy A.; Kihara, Akio; Kim, Deok Ryong; Kim, Do-Hyung; Kim, Dong-Hou; Kim, Eun-Kyoung; Kim, Hyung-Ryong; Kim, Jae-Sung; Kim, Jeong Hun; Kim, Jin Cheon; Kim, John K.; Kim, Peter K.; Kim, Seong Who; Kim, Yong-Sun; Kim, Yonghyun; Kimchi, Adi; Kimmelman, Alec C.; King, Jason S.; Kinsella, Timothy J.; Kirkin, Vladimir; Kirshenbaum, Lorrie A.; Kitamoto, Katsuhiko; Kitazato, Kaio; Klein, Ludger; Klimecki, Walter T.; Klucken, Jochen; Knecht, Erwin; Ko, Ben C.B.; Koch, Jan C.; Koga, Hiroshi; Koh, Jae-Young; Koh, Young Ho; Koike, Masato; Komatsu, Masaaki; Kominami, Eiki; Kong, Hee Jeong; Kong, Wei-Jia; Korolchuk, Viktor I.; Kotake, Yaichiro; Koukourakis, Michael I.; Flores, Juan B. Kouri; Kovács, Attila L.; Kraft, Claudine; Krainc, Dimitri; Krämer, Helmut; Kretz-Remy, Carole; Krichevsky, Anna M.; Kroemer, Guido; Krüger, Rejko; Krut, Oleg; Ktistakis, Nicholas T.; Kuan, Chia-Yi; Kucharczyk, Roza; Kumar, Ashok; Kumar, Raj; Kumar, Sharad; Kundu, Mondira; Kung, Hsing-Jien; Kurz, Tino; Kwon, Ho Jeong; La Spada, Albert R.; Lafont, Frank; Lamark, Trond; Landry, Jacques; Lane, Jon D.; Lapaquette, Pierre; Laporte, Jocelyn F.; László, Lajos; Lavandero, Sergio; Lavoie, Josée N.; Layfield, Robert; Lazo, Pedro A.; Le, Weidong; Le Cam, Laurent; Ledbetter, Daniel J.; Lee, Alvin J.X.; Lee, Byung-Wan; Lee, Gyun Min; Lee, Jongdae; lee, Ju-hyun; Lee, Michael; Lee, Myung-Shik; Lee, Sug Hyung; Leeuwenburgh, Christiaan; Legembre, Patrick; Legouis, Renaud; Lehmann, Michael; Lei, Huan-Yao; Lei, Qun-Ying; Leib, David A.; Leiro, José; Lemasters, John J.; Lemoine, Antoinette; Lesniak, Maciej S.; Lev, Dina; Levenson, Victor V.; Levine, Beth; Levy, Efrat; Li, Faqiang; Li, Jun-Lin; Li, Lian; Li, Sheng; Li, Weijie; Li, Xue-Jun; Li, Yan-Bo; Li, Yi-Ping; Liang, Chengyu; Liang, Qiangrong; Liao, Yung-Feng; Liberski, Pawel P.; Lieberman, Andrew; Lim, Hyunjung J.; Lim, Kah-Leong; Lim, Kyu; Lin, Chiou-Feng; Lin, Fu-Cheng; Lin, Jian; Lin, Jiandie D.; Lin, Kui; Lin, Wan-Wan; Lin, Weei-Chin; Lin, Yi-Ling; Linden, Rafael; Lingor, Paul; Lippincott-Schwartz, Jennifer; Lisanti, Michael P.; Liton, Paloma B.; Liu, Bo; Liu, Chun-Feng; Liu, Kaiyu; Liu, Leyuan; Liu, Qiong A.; Liu, Wei; Liu, Young-Chau; Liu, Yule; Lockshin, Richard A.; Lok, Chun-Nam; Lonial, Sagar; Loos, Benjamin; Lopez-Berestein, Gabriel; López-Otín, Carlos; Lossi, Laura; Lotze, Michael T.; Low, Peter; Lu, Binfeng; Lu, Bingwei; Lu, Bo; Lu, Zhen; Luciano, Fréderic; Lukacs, Nicholas W.; Lund, Anders H.; Lynch-Day, Melinda A.; Ma, Yong; Macian, Fernando; MacKeigan, Jeff P.; Macleod, Kay F.; Madeo, Frank; Maiuri, Luigi; Maiuri, Maria Chiara; Malagoli, Davide; Malicdan, May Christine V.; Malorni, Walter; Man, Na; Mandelkow, Eva-Maria; Manon, Stephen; Manov, Irena; Mao, Kai; Mao, Xiang; Mao, Zixu; Marambaud, Philippe; Marazziti, Daniela; Marcel, Yves L.; Marchbank, Katie; Marchetti, Piero; Marciniak, Stefan J.; Marcondes, Mateus; Mardi, Mohsen; Marfe, Gabriella; Mariño, Guillermo; Markaki, Maria; Marten, Mark R.; Martin, Seamus J.; Martinand-Mari, Camille; Martinet, Wim; Martinez-Vicente, Marta; Masini, Matilde; Matarrese, Paola; Matsuo, Saburo; Matteoni, Raffaele; Mayer, Andreas; Mazure, Nathalie M.; McConkey, David J.; McConnell, Melanie J.; McDermott, Catherine; McDonald, Christine; McInerney, Gerald M.; McKenna, Sharon L.; McLaughlin, BethAnn; McLean, Pamela J.; McMaster, Christopher R.; McQuibban, G. Angus; Meijer, Alfred J.; Meisler, Miriam H.; Meléndez, Alicia; Melia, Thomas J.; Melino, Gerry; Mena, Maria A.; Menendez, Javier A.; Menna-Barreto, Rubem F. S.; Menon, Manoj B.; Menzies, Fiona M.; Mercer, Carol A.; Merighi, Adalberto; Merry, Diane E.; Meschini, Stefania; Meyer, Christian G.; Meyer, Thomas F.; Miao, Chao-Yu; Miao, Jun-Ying; Michels, Paul A.M.; Michiels, Carine; Mijaljica, Dalibor; Milojkovic, Ana; Minucci, Saverio; Miracco, Clelia; Miranti, Cindy K.; Mitroulis, Ioannis; Miyazawa, Keisuke; Mizushima, Noboru; Mograbi, Baharia; Mohseni, Simin; Molero, Xavier; Mollereau, Bertrand; Mollinedo, Faustino; Momoi, Takashi; Monastyrska, Iryna; Monick, Martha M.; Monteiro, Mervyn J.; Moore, Michael N.; Mora, Rodrigo; Moreau, Kevin; Moreira, Paula I.; Moriyasu, Yuji; Moscat, Jorge; Mostowy, Serge; Mottram, Jeremy C.; Motyl, Tomasz; Moussa, Charbel E.-H.; Müller, Sylke; Muller, Sylviane; Münger, Karl; Münz, Christian; Murphy, Leon O.; Murphy, Maureen E.; Musarò, Antonio; Mysorekar, Indira; Nagata, Eiichiro; Nagata, Kazuhiro; Nahimana, Aimable; Nair, Usha; Nakagawa, Toshiyuki; Nakahira, Kiichi; Nakano, Hiroyasu; Nakatogawa, Hitoshi; Nanjundan, Meera; Naqvi, Naweed I.; Narendra, Derek P.; Narita, Masashi; Navarro, Miguel; Nawrocki, Steffan T.; Nazarko, Taras Y.; Nemchenko, Andriy; Netea, Mihai G.; Neufeld, Thomas P.; Ney, Paul A.; Nezis, Ioannis P.; Nguyen, Huu Phuc; Nie, Daotai; Nishino, Ichizo; Nislow, Corey; Nixon, Ralph A.; Noda, Takeshi; Noegel, Angelika A.; Nogalska, Anna; Noguchi, Satoru; Notterpek, Lucia; Novak, Ivana; Nozaki, Tomoyoshi; Nukina, Nobuyuki; Nürnberger, Thorsten; Nyfeler, Beat; Obara, Keisuke; Oberley, Terry D.; Oddo, Salvatore; Ogawa, Michinaga; Ohashi, Toya; Okamoto, Koji; Oleinick, Nancy L.; Oliver, F. Javier; Olsen, Laura J.; Olsson, Stefan; Opota, Onya; Osborne, Timothy F.; Ostrander, Gary K.; Otsu, Kinya; Ou, Jing-hsiung James; Ouimet, Mireille; Overholtzer, Michael; Ozpolat, Bulent; Paganetti, Paolo; Pagnini, Ugo; Pallet, Nicolas; Palmer, Glen E.; Palumbo, Camilla; Pan, Tianhong; Panaretakis, Theocharis; Pandey, Udai Bhan; Papackova, Zuzana; Papassideri, Issidora; Paris, Irmgard; Park, Junsoo; Park, Ohkmae K.; Parys, Jan B.; Parzych, Katherine R.; Patschan, Susann; Patterson, Cam; Pattingre, Sophie; Pawelek, John M.; Peng, Jianxin; Perlmutter, David H.; Perrotta, Ida; Perry, George; Pervaiz, Shazib; Peter, Matthias; Peters, Godefridus J.; Petersen, Morten; Petrovski, Goran; Phang, James M.; Piacentini, Mauro; Pierre, Philippe; Pierrefite-Carle, Valérie; Pierron, Gérard; Pinkas-Kramarski, Ronit; Piras, Antonio; Piri, Natik; Platanias, Leonidas C.; Pöggeler, Stefanie; Poirot, Marc; Poletti, Angelo; Poüs, Christian; Pozuelo-Rubio, Mercedes; Prætorius-Ibba, Mette; Prasad, Anil; Prescott, Mark; Priault, Muriel; Produit-Zengaffinen, Nathalie; Progulske-Fox, Ann; Proikas-Cezanne, Tassula; Przedborski, Serge; Przyklenk, Karin; Puertollano, Rosa; Puyal, Julien; Qian, Shu-Bing; Qin, Liang; Qin, Zheng-Hong; Quaggin, Susan E.; Raben, Nina; Rabinowich, Hannah; Rabkin, Simon W.; Rahman, Irfan; Rami, Abdelhaq; Ramm, Georg; Randall, Glenn; Randow, Felix; Rao, V. Ashutosh; Rathmell, Jeffrey C.; Ravikumar, Brinda; Ray, Swapan K.; Reed, Bruce H.; Reed, John C.; Reggiori, Fulvio; Régnier-Vigouroux, Anne; Reichert, Andreas S.; Reiners, Jr., John J.; Reiter, Russel J.; Ren, Jun; Revuelta, José L.; Rhodes, Christopher J.; Ritis, Konstantinos; Rizzo, Elizete; Robbins, Jeffrey; Roberge, Michel; Roca, Hernan; Roccheri, Maria C.; Rocchi, Stephane; Rodemann, H. Peter; Rodríguez de Córdoba, Santiago; Rohrer, Bärbel; Roninson, Igor B.; Rosen, Kirill; Rost-Roszkowska, Magdalena M.; Rouis, Mustapha; Rouschop, Kasper M.A.; Rovetta, Francesca; Rubin, Brian P.; Rubinsztein, David C.; Ruckdeschel, Klaus; Rucker, Edmund B.; Rudich, Assaf; Rudolf, Emil; Ruiz-Opazo, Nelson; Russo, Rossella; Rusten, Tor Erik; Ryan, Kevin M.; Ryter, Stefan W.; Sabatini, David M.; Sadoshima, Junichi; Saha, Tapas; Saitoh, Tatsuya; Sakagami, Hiroshi; Sakai, Yasuyoshi; Salekdeh, Ghasem Hoseini; Salomoni, Paolo; Salvaterra, Paul M.; Salvesen, Guy; Salvioli, Rosa; Sanchez, Anthony M.J.; Sánchez-Alcázar, José A.; Sánchez-Prieto, Ricardo; Sandri, Marco; Sankar, Uma; Sansanwal, Poonam; Santambrogio, Laura; Saran, Shweta; Sarkar, Sovan; Sarwal, Minnie; Sasakawa, Chihiro; Sasnauskiene, Ausra; Sass, Miklós; Sato, Ken; Sato, Miyuki; Schapira, Anthony H.V.; Scharl, Michael; Schätzl, Hermann M.; Scheper, Wiep; Schiaffino, Stefano; Schneider, Claudio; Schneider, Marion E.; Schneider-Stock, Regine; Schoenlein, Patricia V.; Schorderet, Daniel F.; Schüller, Christoph; Schwartz, Gary K.; Scorrano, Luca; Sealy, Linda; Seglen, Per O.; Segura-Aguilar, Juan; Seiliez, Iban; Seleverstov, Oleksandr; Sell, Christian; Seo, Jong Bok; Separovic, Duska; Setaluri, Vijayasaradhi; Setoguchi, Takao; Settembre, Carmine; Shacka, John J.; Shanmugam, Mala; Shapiro, Irving M.; Shaulian, Eitan; Shaw, Reuben J.; Shelhamer, James H.; Shen, Han-Ming; Shen, Wei-Chiang; Sheng, Zu-Hang; Shi, Yang; Shibuya, Kenichi; Shidoji, Yoshihiro; Shieh, Jeng-Jer; Shih, Chwen-Ming; Shimada, Yohta; Shimizu, Shigeomi; Shintani, Takahiro; Shirihai, Orian S.; Shore, Gordon C.; Sibirny, Andriy A.; Sidhu, Stan B.; Sikorska, Beata; Silva-Zacarin, Elaine C.M.; Simmons, Alison; Simon, Anna Katharina; Simon, Hans-Uwe; Simone, Cristiano; Simonsen, Anne; Sinclair, David A.; Singh, Rajat; Sinha, Debasish; Sinicrope, Frank A.; Sirko, Agnieszka; Siu, Parco M.; Sivridis, Efthimios; Skop, Vojtech; Skulachev, Vladimir P.; Slack, Ruth S.; Smaili, Soraya S.; Smith, Duncan R.; Soengas, Maria S.; Soldati, Thierry; Song, Xueqin; Sood, Anil K.; Soong, Tuck Wah; Sotgia, Federica; Spector, Stephen A.; Spies, Claudia D.; Springer, Wolfdieter; Srinivasula, Srinivasa M.; Stefanis, Leonidas; Steffan, Joan S.; Stendel, Ruediger; Stenmark, Harald; Stephanou, Anastasis; Stern, Stephan T.; Sternberg, Cinthya; Stork, Björn; Strålfors, Peter; Subauste, Carlos S.; Sui, Xinbing; Sulzer, David; Sun, Jiaren; Sun, Shi-Yong; Sun, Zhi-Jun; Sung, Joseph J.Y.; Suzuki, Kuninori; Suzuki, Toshihiko; Swanson, Michele S.; Swanton, Charles; Sweeney, Sean T.; Sy, Lai-King; Szabadkai, György; Tabas, Ira; Taegtmeyer, Heinrich; Tafani, Marco; Takács-Vellai, Krisztina; Takano, Yoshitaka; Takegawa, Kaoru; Takemura, Genzou; Takeshita, Fumihiko; Talbot, Nicholas J.; Tan, Kevin S.W.; Tanaka, Keiji; Tanaka, Kozo; Tang, Daolin; Tang, Dingzhong; Tanida, Isei; Tannous, Bakhos A.; Tavernarakis, Nektarios; Taylor, Graham S.; Taylor, Gregory A.; Taylor, J. Paul; Terada, Lance S.; Terman, Alexei; Tettamanti, Gianluca; Thevissen, Karin; Thompson, Craig B.; Thorburn, Andrew; Thumm, Michael; Tian, FengFeng; Tian, Yuan; Tocchini-Valentini, Glauco; Tolkovsky, Aviva M.; Tomino, Yasuhiko; Tönges, Lars; Tooze, Sharon A.; Tournier, Cathy; Tower, John; Towns, Roberto; Trajkovic, Vladimir; Travassos, Leonardo H.; Tsai, Ting-Fen; Tschan, Mario P.; Tsubata, Takeshi; Tsung, Allan; Turk, Boris; Turner, Lorianne S.; Tyagi, Suresh C.; Uchiyama, Yasuo; Ueno, Takashi; Umekawa, Midori; Umemiya-Shirafuji, Rika; Unni, Vivek K.; Vaccaro, Maria I.; Valente, Enza Maria; Van den Berghe, Greet; van der Klei, Ida J.; van Doorn, Wouter G.; van Dyk, Linda F.; van Egmond, Marjolein; van Grunsven, Leo A.; Vandenabeele, Peter; Vandenberghe, Wim P.; Vanhorebeek, Ilse; Vaquero, Eva C.; Velasco, Guillermo; Vellai, Tibor; Vicencio, José Miguel; Vierstra, Richard D.; Vila, Miquel; Vindis, Cécile; Viola, Giampietro; Viscomi, Maria Teresa; Voitsekhovskaja, Olga V.; von Haefen, Clarissa; Votruba, Marcela; Wada, Keiji; Wade-Martins, Richard; Walker, Cheryl L.; Walsh, Craig M.; Walter, Jochen; Wan, Xiang-Bo; Wang, Aimin; Wang, Chenguang; Wang, Dawei; Wang, Fan; Wang, Fen; Wang, Guanghui; Wang, Haichao; Wang, Hong-Gang; Wang, Horng-Dar; Wang, Jin; Wang, Ke; Wang, Mei; Wang, Richard C.; Wang, Xinglong; Wang, Xiujie J.; Wang, Ying-Jan; Wang, Yipeng; Wang, Zhen-Bo; Wang, Zhigang Charles; Wang, Zhinong; Wansink, Derick G.; Ward, Diane M.; Watada, Hirotaka; Waters, Sarah L.; Webster, Paul; Wei, Lixin; Weihl, Conrad C.; Weiss, William A.; Welford, Scott M.; Wen, Long-Ping; Whitehouse, Caroline A.; Whitton, J. Lindsay; Whitworth, Alexander J.; Wileman, Tom; Wiley, John W.; Wilkinson, Simon; Willbold, Dieter; Williams, Roger L.; Williamson, Peter R.; Wouters, Bradly G.; Wu, Chenghan; Wu, Dao-Cheng; Wu, William K.K.; Wyttenbach, Andreas; Xavier, Ramnik J.; Xi, Zhijun; Xia, Pu; Xiao, Gengfu; Xie, Zhiping; Xie, Zhonglin; Xu, Da-zhi; Xu, Jianzhen; Xu, Liang; Xu, Xiaolei; Yamamoto, Ai; Yamamoto, Akitsugu; Yamashina, Shunhei; Yamashita, Michiaki; Yan, Xianghua; Yanagida, Mitsuhiro; Yang, Dun-Sheng; Yang, Elizabeth; Yang, Jin-Ming; Yang, Shi Yu; Yang, Wannian; Yang, Wei Yuan; Yang, Zhifen; Yao, Meng-Chao; Yao, Tso-Pang; Yeganeh, Behzad; Yen, Wei-Lien; Yin, Jia-Jing; Yin, Xiao-Ming; Yoo, Ook-Joon; Yoon, Gyesoon; Yoon, Seung-Yong; Yorimitsu, Tomohiro; Yoshikawa, Yuko; Yoshimori, Tamotsu; Yoshimoto, Kohki; You, Ho Jin; Youle, Richard J.; Younes, Anas; Yu, Li; Yu, Long; Yu, Seong-Woon; Yu, Wai Haung; Yuan, Zhi-Min; Yue, Zhenyu; Yun, Cheol-Heui; Yuzaki, Michisuke; Zabirnyk, Olga; Silva-Zacarin, Elaine; Zacks, David; Zacksenhaus, Eldad; Zaffaroni, Nadia; Zakeri, Zahra; Zeh, III, Herbert J.; Zeitlin, Scott O.; Zhang, Hong; Zhang, Hui-Ling; Zhang, Jianhua; Zhang, Jing-Pu; Zhang, Lin; Zhang, Long; Zhang, Ming-Yong; Zhang, Xu Dong; Zhao, Mantong; Zhao, Yi-Fang; Zhao, Ying; Zhao, Zhizhuang J.; Zheng, Xiaoxiang; Zhivotovsky, Boris; Zhong, Qing; Zhou, Cong-Zhao; Zhu, Changlian; Zhu, Wei-Guo; Zhu, Xiao-Feng; Zhu, Xiongwei; Zhu, Yuangang; Zoladek, Teresa; Zong, Wei-Xing; Zorzano, Antonio; Zschocke, Jürgen; Zuckerbraun, Brian (2012) Guidelines for the use and interpretation of assays for monitoring autophagy. Autophagy 8 (4) 445-544.
  • Orchard, Sandra; Kerrien, Samuel; Abbani, Sara; Aranda, Bruno; Bhate, Jignesh; Bidwell, Shelby; Bridge, Alan; Briganti, Leonardo; Brinkman, Fiona; Cesareni, Gianni; Chatr-aryamontri, Andrew; Chautard, Emilie; Chen, Carol; Dumousseau, Marine; Goll, Johannes; Hancock, Robert; Hannick, Linda I.; Jurisica, Igor; Khadake, Jyoti; Lynn, David J.; Mahadevan, Usha; Perfetto, Livia; Raghunath, Arathi; Ricard-Blum, Sylvie; Roechert, Bernd; Salwinski, Lukasz; Stümpflen, Volker; Tyers, Mike; Uetz, Peter; Xenarios, Ioannis; Hermjakob, Henning (2012) Protein interaction data curation: the International Molecular Exchange (IMEx) consortium. Nat. Meth. 9 (4) 345-350.
  • Jungo, Florence; Bougueleret, Lydie; Xenarios, Ioannis; Poux, Sylvain (2012) The UniProtKB/Swiss-Prot Tox-Prot program: A central hub of integrated venom protein data. Toxicon 60 (4) 551-557.
  • Burge, Sarah; Attwood, Teresa K.; Bateman, Alex; Berardini, Tanya Z.; Cherry, Michael; O\'Donovan, Claire; Xenarios, loannis; Gaudet, Pascale (2012) Biocurators and Biocuration: surveying the 21st century challenges. Database bar059.
  • Brankatschk, Ben; Wichert, Sven P.; Johnson, Shem D.; Schaad, Olivier; Rossner, Moritz J.; Gruenberg, Jean (2012) Regulation of the EGF Transcriptional Response by Endocytic Sorting. Sci. Signaling 5 (215) ra21.
  • Epstein, Sharon; Kirkpatrick, Clare L.; Castillon, Guillaume A.; Muniz, Manuel; Riezman, Isabelle; David, Fabrice P. A.; Wollheim, Claes B.; Riezman, Howard (2012) Activation of the unfolded protein response pathway causes ceramide accumulation in yeast and INS-1E insulinoma cells. J. Lipid Res. 53 (3) 412-420.
  • Lima, Wanessa C.; Leuba, Florence; Soldati, Thierry; Cosson, Pierre (2012) Mucolipin controls lysosome exocytosis in Dictyostelium. J. Cell Sci. 125 (9) 2315-2322.
  • Essid, Miriam; Gopaldass, Navin; Yoshida, Kunito; Merrifield, Christien; Soldati, Thierry (2012) Rab8a regulates the exocyst-mediated kiss-and-run discharge of the Dictyostelium contractile vacuole. Mol. Biol. Cell 23 (7) 1267-1282.
  • Bissig, Christin Johnson, Shem Gruenberg, Jean (2012) Studying Lipids Involved in the Endosomal Pathway. Lipids Volume 108 (Chapter 2)Methods in Cell Biology. Elsevier. 19-46.
  • Jennemann, Richard; Rabionet, Mariona; Gorgas, Karin; Epstein, Sharon; Dalpke, Alexander; Rothermel, Ulrike; Bayerle, Aline; van der Hoeven, Franciscus; Imgrund, Silke; Kirsch, Joachim; Nickel, Walter; Willecke, Klaus; Riezman, Howard; Grone, Hermann-Josef; Sandhoff, Roger (2012) Loss of ceramide synthase 3 causes lethal skin barrier disruption. Hum. Mol. Genet. 21 (3) 586-608.
  • Wartlick, Ortrud; Mumcu, Peer; Julicher, Frank; Gonzalez-Gaitan, Marcos (2012) Response to Comment on “Dynamics of Dpp Signaling and Proliferation Control”. Science 335 (6067) 401.
  • Sansone, Susanna-Assunta; Rocca-Serra, Philippe; Field, Dawn; Maguire, Eamonn; Taylor, Chris; Hofmann, Oliver; Fang, Hong; Neumann, Steffen; Tong, Weida; Amaral-Zettler, Linda; Begley, Kimberly; Booth, Tim; Bougueleret, Lydie; Burns, Gully; Chapman, Brad; Clark, Tim; Coleman, Lee-Ann; Copeland, Jay; Das, Sudeshna; de Daruvar, Antoine; de Matos, Paula; Dix, Ian; Edmunds, Scott; Evelo, Chris T.; Forster, Mark J.; Gaudet, Pascale; Gilbert, Jack; Goble, Carole; Griffin, Julian L.; Jacob, Daniel; Kleinjans, Jos; Harland, Lee; Haug, Kenneth; Hermjakob, Henning; Sui, Shannan J. Ho; Laederach, Alain; Liang, Shaoguang; Marshall, Stephen; McGrath, Annette; Merrill, Emily; Reilly, Dorothy; Roux, Magali; Shamu, Caroline E.; Shang, Catherine A.; Steinbeck, Christoph; Trefethen, Anne; Williams-Jones, Bryn; Wolstencroft, Katherine; Xenarios, Ioannis; Hide, Winston (2012) Toward interoperable bioscience data. Nat. Genet. 44 (2) 121-126.
  • Jaiswal, Pundrik; Soldati, Thierry; Thewes, Sascha; Baskar, Ramamurthy (2012) Regulation of aggregate size and pattern by adenosine and caffeine in cellular slime molds. BMC Dev. Biol. 12 (1) 5.
  • Sorre, Benoît; Callan-Jones, Andrew; Manzi, John; Goud, Bruno; Prost, Jacques; Bassereau, Patricia; Roux, Aurélien (2012) Nature of curvature coupling of amphiphysin with membranes depends on its bound density. Proc. Natl. Acad. Sci. U. S. A. 109 (1) 173-178.
  • Saurat, Jean-Hilaire; Kaya, Guerkan; Saxer-Sekulic, Nikolina; Pardo, Bruno; Becker, Minerva; Fontao, Lionel; Mottu, Florence; Carraux, Pierre; Pham, Xuan-Cuong; Barde, Caroline; Fontao, Fabienne; Zennegg, Markus; Schmid, Peter; Schaad, Olivier; Descombes, Patrick; Sorg, Olivier (2012) The Cutaneous Lesions of Dioxin Exposure: Lessons from the Poisoning of Victor Yushchenko. Toxicol. Sci. 125 (1) 310-317.
  • Nikolaev, Sergey I.; Rimoldi, Donata; Iseli, Christian; Valsesia, Armand; Robyr, Daniel; Gehrig, Corinne; Harshman, Keith; Guipponi, Michel; Bukach, Olesya; Zoete, Vincent; Michielin, Olivier; Muehlethaler, Katja; Speiser, Daniel; Beckmann, Jacques S.; Xenarios, Ioannis; Halazonetis, Thanos D.; Jongeneel, C. Victor; Stevenson, Brian J.; Antonarakis, Stylianos E (2012) Exome sequencing identifies recurrent somatic MAP2K1 and MAP2K2 mutations in melanoma. Nat. Genet. 44 (2) 133-139.
  • The Gene Ontology Consortium, (2012) The Gene Ontology: enhancements for 2011. Nucleic Acids Res. 40 (D1) D559-D564.
  • Alcántara, Rafael; Axelsen, Kristian B.; Morgat, Anne; Belda, Eugeni; Coudert, Elisabeth; Bridge, Alan; Cao, Hong; de Matos, Paula; Ennis, Marcus; Turner, Steve; Owen, Gareth; Bougueleret, Lydie; Xenarios, Ioannis; Steinbeck, Christoph (2012) Rhea—a manually curated resource of biochemical reactions. Nucleic Acids Res. 40 (D1) D754-D760.
  • Dimmer, Emily C.; Huntley, Rachael P.; Alam-Faruque, Yasmin; Sawford, Tony; O\'Donovan, Claire; Martin, Maria J.; Bely, Benoit; Browne, Paul; Mun Chan, Wei; Eberhardt, Ruth; Gardner, Michael; Laiho, Kati; Legge, Duncan; Magrane, Michele; Pichler, Klemens; Poggioli, Diego; Sehra, Harminder; Auchincloss, Andrea; Axelsen, Kristian; Blatter, Marie-Claude; Boutet, Emmanuel; Braconi-Quintaje, Silvia; Breuza, Lionel; Bridge, Alan; Coudert, Elizabeth; Estreicher, Anne; Famiglietti, Livia; Ferro-Rojas, Serenella; Feuermann, Marc; Gos, Arnaud; Gruaz-Gumowski, Nadine; Hinz, Ursula; Hulo, Chantal; James, Janet; Jimenez, Silvia; Jungo, Florence; Keller, Guillaume; Lemercier, Phillippe; Lieberherr, Damien; Masson, Patrick; Moinat, Madelaine; Pedruzzi, Ivo; Poux, Sylvain; Rivoire, Catherine; Roechert, Bernd; Schneider, Michael; Stutz, Andre; Sundaram, Shyamala; Tognolli, Michael; Bougueleret, Lydie; Argoud-Puy, Ghislaine; Cusin, Isabelle; Duek- Roggli, Paula; Xenarios, Ioannis; Apweiler, Rolf (2012) The UniProt-GO Annotation database in 2011. Nucleic Acids Res. 40 (D1) D565-D570.
  • Morgat, Anne; Coissac, Eric; Coudert, Elisabeth; Axelsen, Kristian B.; Keller, Guillaume; Bairoch, Amos; Bridge, Alan; Bougueleret, Lydie; Xenarios, Ioannis; Viari, Alain (2012) UniPathway: a resource for the exploration and annotation of metabolic pathways. Nucleic Acids Res. 40 (D1) D761-D769.
  • The UniProt Consortium, (2012) Reorganizing the protein space at the Universal Protein Resource (UniProt). Nucleic Acids Res. 40 (D1) D71-D75.
  • Gopaldass, Navin; Patel, Devang; Kratzke, Ramona; Dieckmann, Regis; Hausherr, Stéphanie; Hagedorn, Monica; Monroy, Roger; Krüger, Julia; Neuhaus, Eva M.; Hoffmann, Eik; Hille, Katja; Kuznetsov, Sergei A.; Soldati, Thierry (2012) Dynamin A, Myosin IB and Abp1 Couple Phagosome Maturation to F-Actin Binding. Traffic 13 (1) 120-130.
  • Falguières, Thomas; Castle, David; Gruenberg, Jean (2012) Regulation of the MVB Pathway by SCAMP3. Traffic 13 (1) 131-142.
  • Garg, Abhishek Mohanram, Kartik De Micheli, Giovanni Xenarios, Ioannis (2012) Implicit Methods for Qualitative Modeling of Gene Regulatory Networks. Gene Regulatory Networks Vol. 786Ed. Deplancke, Bart Gheldof, NeleMethods in Molecular Biology. Humana Press. 397-343.

2011

  • Kapur, Karen; Schüpbach, Thierry; Xenarios, Ioannis; Kutalik, Zoltán; Bergmann, Sven; Xiong, Momiao (2011) Comparison of Strategies to Detect Epistasis from eQTL Data. PLoS ONE 6 (12) e28415.
  • Riba-Grognuz, Oksana; Keller, Laurent; Falquet, Laurent; Xenarios, Ioannis; Wurm, Yannick (2011) Visualization and quality assessment of de novo genome assemblies. Bioinformatics 27 (24) 3425-3426.
  • Alvarez-Vasquez, Fernando; Riezman, Howard; Hannun, Yusuf A.; Voit, Eberhard O.; Zhang, Zhengguang (2011) Mathematical Modeling and Validation of the Ergosterol Pathway in Saccharomyces cerevisiae. PLoS ONE 6 (12) e28344.
  • Takahashi-Umebayashi, Miwa; Pineau, Ludovic; Hannich, Thomas; Zumbuehl, Andreas; Alonso Doval, David; Matile, Stefan; Heinis, Christian; Turcatti, Gerardo; Loewith, Robbie; Roux, Aurelien; Reymond, Luc; Johnsson, Kai; Riezman, Howard (2011) Chemical Biology Approaches to Membrane Homeostasis and Function. CHIMIA 65 (11) 849-852.
  • Montenegro, Javier; Gehin, Charlotte; Bang, Eun-Kyoung; Fin, Andrea; Alonso Doval, David; Riezman, Howard; Sakai, Naomi; Matile, Stefan (2011) Conceptually New Entries into Cells. CHIMIA 65 (11) 853-858.
  • Moreau, Dimitri; Scott, Cameron; Gruenberg, Jean (2011) A Novel Strategy to Identify Drugs that Interfere with Endosomal Lipids. CHIMIA 65 (11) 846-848.
  • Sturzenegger, Susi; Johnsson, Kai; Riezman, Howard (2011) NCCR Chemical Biology: Interdisciplinary Research Excellence, Outreach, Education, and New Tools for Switzerland. CHIMIA 65 (11) 832-834.
  • Aumeier, Charlotte Menzel, Diedrik (2011) Secretion in the Diatoms. Secretions and Exudates in Biological Systems vol 12Ed. Vivanco, Jorge M. Baluška, FrantišekSignaling and Communication in Plants. Springer. (Berlin, Heidelberg). 221-250.
  • Castanon, Irinka; González-Gaitán, Marcos (2011) Integrating levels of complexity: a trend in developmental biology. Curr. Opin. Cell Biol. 23 (6) 647-649.
  • Lissina, Elena; Young, Brian; Urbanus, Malene L.; Guan, Xue Li; Lowenson, Jonathan; Hoon, Shawn; Baryshnikova, Anastasia; Riezman, Isabelle; Michaut, Magali; Riezman, Howard; Cowen, Leah E.; Wenk, Markus R.; Clarke, Steven G.; Giaever, Guri; Nislow, Corey; Cooper, Sara J. (2011) A Systems Biology Approach Reveals the Role of a Novel Methyltransferase in Response to Chemical Stress and Lipid Homeostasis. PLoS Genet. 7 (10) e1002332.
  • Scott, Cameron C; Bissig, Christin; Gruenberg, Jean (2011) Duelling functions of the V-ATPase. EMBO J. 30 (20) 4113-4115.
  • Castanon, Irinka; González-Gaitán, Marcos (2011) Oriented cell division in vertebrate embryogenesis. Curr. Opin. Cell Biol. 23 (6) 697-704.
  • Wartlick, Ortrud; González-Gaitán, Marcos (2011) The missing link: implementation of morphogenetic growth control on the cellular and molecular level. Curr. Opin. Genet. Dev. 21 (6) 690-695.
  • Ternes, Philipp; Feussner, Kirstin; Werner, Stephanie; Lerche, Jennifer; Iven, Tim; Heilmann, Ingo; Riezman, Howard; Feussner, Ivo (2011) Disruption of the ceramide synthase LOH1 causes spontaneous cell death in Arabidopsis thaliana. New Phytol. 192 (4) 841-854.
  • Wartlick, Ortrud; Mumcu, Peer; Jülicher, Frank; Gonzalez-Gaitan, Marcos (2011) Understanding morphogenetic growth control – lessons from flies. Nat. Rev. Mol. Cell Biol. 12 (9) 594-604.
  • Lelièvre, Elise C.; Lek, Madelen; Boije, Henrik; Houille-Vernes, Laura; Brajeul, Valérie; Slembrouck, Amélie; Roger, Jérôme E.; Sahel, José-Alain; Matter, Jean-Marc; Sennlaub, Florian; Hallböök, Finn; Goureau, Olivier; Guillonneau, Xavier (2011) Ptf1a/Rbpj complex inhibits ganglion cell fate and drives the specification of all horizontal cell subtypes in the chick retina. Dev. Biol. 358 (2) 296-308.
  • Fujita, Morihisa; Watanabe, Reika; Jaensch, Nina; Romanova-Michaelides, Maria; Satoh, Tadashi; Kato, Masaki; Riezman, Howard; Yamaguchi, Yoshiki; Maeda, Yusuke; Kinoshita, Taroh (2011) Sorting of GPI-anchored proteins into ER exit sites by p24 proteins is dependent on remodeled GPI. J. Cell Biol. 194 (1) 61-75.
  • Boeckmann, Brigitte; Robinson-Rechavi, Marc; Xenarios, Ioannis; Dessimoz, Christophe (2011) Conceptual framework and pilot study to benchmark phylogenomic databases based on reference gene trees. Briefings Bioinf. 12 (5) 423-435.
  • Brankatschk, Ben; Pons, Véronique; Parton, Robert G.; Gruenberg, Jean; Rappoport, Joshua Z. (2011) Role of SNX16 in the Dynamics of Tubulo-Cisternal Membrane Domains of Late Endosomes. PLoS ONE 6 (7) e21771.
  • Di Tommaso, Paolo; Moretti, Sebastien; Xenarios, Ioannis; Orobitg, Miquel; Montanyola, Alberto; Chang, Jia-Ming; Taly, Jean-François; Notredame, Cedric (2011) T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension. Nucleic Acids Res. 39 (suppl) W13-W17.
  • Souza, Cleiton M.; Schwabe, Tatjana M.E.; Pichler, Harald; Ploier, Birgit; Leitner, Erich; Guan, Xue Li; Wenk, Markus R.; Riezman, Isabelle; Riezman, Howard (2011) A stable yeast strain efficiently producing cholesterol instead of ergosterol is functional for tryptophan uptake, but not weak organic acid resistance. Metab. Eng. 13 (5) 555-569.
  • Castillon, Guillaume A.; Aguilera-Romero, Auxiliadora; Manzano-Lopez, Javier; Epstein, Sharon; Kajiwara, Kentaro; Funato, Kouichi; Watanabe, Reika; Riezman, Howard; Muniz, Manuel (2011) The yeast p24 complex regulates GPI-anchored protein transport and quality control by monitoring anchor remodeling. Mol. Biol. Cell 22 (16) 2924-2936.
  • Shlomovitz, Roie; Gov, Nir S.; Roux, Aurélien (2011) Membrane-mediated interactions and the dynamics of dynamin oligomers on membrane tubes. New J. Phys. 13 (6) 065008.
  • Carnell, Michael; Zech, Tobias; Calaminus, Simon D.; Ura, Seiji; Hagedorn, Monica; Johnston, Simon A.; May, Robin C.; Soldati, Thierry; Machesky, Laura M.; Insall, Robert H. (2011) Actin polymerization driven by WASH causes V-ATPase retrieval and vesicle neutralization before exocytosis. J. Cell Biol. 193 (5) 831-839.
  • Dunand-Sauthier, Isabelle; Santiago-Raber, Marie-Laure; Capponi, Leonardo; Vejnar, Charles E.; Schaad, Olivier; Irla, Magali; Seguin-Estevez, Queralt; Descombes, Patrick; Zdobnov, Evgeny M.; Acha-Orbea, Hans; Reith, Walter (2011) Silencing of c-Fos expression by microRNA-155 is critical for dendritic cell maturation and function. Blood 117 (17) 4490-4500.
  • Laulagnier, Karine; Schieber, Nicole L.; Maritzen, Tanja; Haucke, Volker; Parton, Robert G.; Gruenberg, Jean (2011) Role of AP1 and Gadkin in the traffic of secretory endo-lysosomes. Mol. Biol. Cell 22 (12) 2068-2082.
  • Valsesia, Armand; Rimoldi, Donata; Martinet, Danielle; Ibberson, Mark; Benaglio, Paola; Quadroni, Manfredo; Waridel, Patrice; Gaillard, Muriel; Pidoux, Mireille; Rapin, Blandine; Rivolta, Carlo; Xenarios, Ioannis; Simpson, Andrew J. G.; Antonarakis, Stylianos E.; Beckmann, Jacques S.; Jongeneel, C. Victor; Iseli, Christian; Stevenson, Brian J.; Krahe, Ralf (2011) Network-Guided Analysis of Genes with Altered Somatic Copy Number and Gene Expression Reveals Pathways Commonly Perturbed in Metastatic Melanoma. PLoS ONE 6 (4) e18369.
  • Semrau, Stefan; Holtzer, Laurent; González-Gaitán, Marcos; Schmidt, Thomas (2011) Quantification of Biological Interactions with Particle Image Cross-Correlation Spectroscopy (PICCS). Biophys. J. 100 (7) 1810-1818.
  • Wurm, Yannick; Wang, John; Riba-Grognuz, Oksana; Corona, Miguel; Nygaard, Sanne; Hunt, Brendan G.; Ingram, Krista K.; Falquet, Laurent; Nipitwattanaphon, Mingkwan; Gotzek, Dietrich; Dijkstra, Michiel B.; Oettler, Jan; Comtesse, Fabien; Shih, Cheng-Jen; Wu, Wen-Jer; Yang, Chin-Cheng; Thomas, Jerome; Beaudoing, Emmanuel; Pradervand, Sylvain; Flegel, Volker; Cook, Erin D.; Fabbretti, Roberto; Stockinger, Heinz; Long, Li; Farmerie, William G.; Oakey, Jane; Boomsma, Jacobus J.; Pamilo, Pekka; Yi, Soojin V.; Heinze, Jürgen; Goodisman, Michael A. D.; Farinelli, Laurent; Harshman, Keith; Hulo, Nicolas; Cerutti, Lorenzo; Xenarios, Ioannis; Shoemaker, DeWayne; Keller, Laurent (2011) The genome of the fire ant Solenopsis invicta. Proc. Natl. Acad. Sci. U. S. A. 108 (14) 5679-5684.
  • Hannich, J. Thomas; Umebayashi, Kyohei; Riezman, Howard (2011) Distribution and Functions of Sterols and Sphingolipids. Cold Spring Harbor Perspect. Biol. 3 (5) a004762.
  • Sankar, Martial; Osmont, Karen S.; Rolcik, Jakub; Gujas, Bojan; Tarkowska, Danuse; Strnad, Miroslav; Xenarios, Ioannis; Hardtke, Christian S. (2011) A qualitative continuous model of cellular auxin and brassinosteroid signaling and their crosstalk. Bioinformatics 27 (10) 1404-1412.
  • Magrane, Michele; UniProt Consortium, (2011) UniProt Knowledgebase: a hub of integrated protein data. Database bar009.
  • Wartlick, Ortrud; Mumcu, P.; Kicheva, Anna; Bittig, T.; Seum, Carole; Julicher, Frank; Gonzalez-Gaitan, Marcos (2011) Dynamics of Dpp Signaling and Proliferation Control. Science 331 (6021) 1154-1159.
  • Campos, Cláudia; Kamiya, Mako; Banala, Sambashiva; Johnsson, Kai; González-Gaitán, Marcos (2011) Labelling cell structures and tracking cell lineage in zebrafish using SNAP-tag. Dev. Dyn. 240 (4) 820-827.
  • Shivapurkar, Rupali; Souza, Cleiton M.; Jeannerat, Damien; Riezman, Howard (2011) An Efficient Method for the Production of Isotopically Enriched Cholesterol for NMR. J. Lipid Res. 52 (5) 1062-1065.
  • Chang-Ileto, Belle; Frere, Samuel G.; Chan, Robin B.; Voronov, Sergey V.; Roux, Aurélien; Di Paolo, Gilbert (2011) Synaptojanin 1-Mediated PI(4,5)P2 Hydrolysis Is Modulated by Membrane Curvature and Facilitates Membrane Fission. Dev. Cell 20 (2) 206-218.
  • Ternes, Philipp; Wobbe, Tobias; Schwarz, Marnie; Albrecht, Sandra; Feussner, Kirstin; Riezman, Isabelle; Cregg, James M.; Heinz, Ernst; Riezman, Howard; Feussner, Ivo; Warnecke, Dirk (2011) Two Pathways of Sphingolipid Biosynthesis Are Separated in the Yeast Pichia pastoris. J. Biol. Chem. 286 (13) 11401-11414.
  • Brach, Thorsten; Specht, Tanja; Kaksonen, Marko (2011) Reassessment of the role of plasma membrane domains in the regulation of vesicular traffic in yeast. J. Cell Sci. 124 (3) 328-337.
  • Kukulski, Wanda; Schorb, Martin; Welsch, Sonja; Picco, Andrea; Kaksonen, Marko; Briggs, John A.G. (2011) Correlated fluorescence and 3D electron microscopy with high sensitivity and spatial precision. J. Cell Biol. 208 (1) 3-119.
  • Scott, Cameron C.; Gruenberg, Jean (2011) Ion flux and the function of endosomes and lysosomes: pH is just the start. BioEssays 33 (2) 103-110.
  • Lelong, Emmanuelle; Marchetti, Anna; Guého, Aurélie; Lima, Wanessa C.; Sattler, Natascha; Molmeret, Maëlle; Hagedorn, Monica; Soldati, Thierry; Cosson, Pierre (2011) Role of magnesium and a phagosomal P-type ATPase in intracellular bacterial killing. Cell. Microbiol. 13 (2) 246-258.
  • Hulo, Chantal; de Castro, Edouard; Masson, Patrick; Bougueleret, Lydie; Bairoch, Amos; Xenarios, Ioannis; Le Mercier, Philippe (2011) ViralZone: a knowledge resource to understand virus diversity. Nucleic Acids Res. 39 (suppl 1) D576-D582.
  • Papaioannou, Marilena D.; Lagarrigue, Melanie; Vejnar, Charles E.; Rolland, Antoine D.; Kuhne, Francoise; Aubry, Florence; Schaad, Olivier; Fort, Alexandre; Descombes, Patrick; Neerman-Arbez, Marguerite; Guillou, Florian; Zdobnov, Evgeny M.; Pineau, Charles; Nef, Serge (2011) Loss of Dicer in Sertoli Cells Has a Major Impact on the Testicular Proteome of Mice. Mol. Cell. Proteomics 10 (4) M900587-MCP200.

2010

  • Assaker, Gloria; Ramel, Damien; Wculek, Stefanie K.; Gonzalez-Gaitan, Marcos; Emery, Gregory (2010) Spatial restriction of receptor tyrosine kinase activity through a polarized endocytic cycle controls border cell migration. Proc. Natl. Acad. Sci. U. S. A. 107 (52) 22558-22563.
  • Gordon, Vicki; Bhadel, Shriti; Wunderlich, Winfried; Zhang, JoAnn; Ficarro, Scott B.; Mollah, Sahana A.; Shabanowitz, Jeffrey; Hunt, Donald F.; Xenarios, Ioannis; Hahn, William C.; Conaway, Mark; Carey, Michael F.; Gioeli, Daniel (2010) CDK9 Regulates AR Promoter Selectivity and Cell Growth through Serine 81 Phosphorylation. Mol. Endocrinol. 24 (12) 2267-2280.
  • Morlot, Sandrine; Lenz, Martin; Prost, Jacques; Joanny, Jean-François; Roux, Aurélien (2010) Deformation of Dynamin Helices Damped by Membrane Friction. Biophys. J. 99 (11) 3580-3588.
  • Gallego, Oriol; Betts, Matthew J.; Gvozdenovic-Jeremic, Jelena; Maeda, Kenji; Matetzki, Christian; Aguilar-Gurrieri, Carmen; Beltran-Alvarez, Pedro; Bonn, Stefan; Fernández-Tornero, Carlos; Jensen, Lars Juhl; Kuhn, Michael; Trott, Jamie; Rybin, Vladimir; Müller, Christoph W.; Bork, Peer; Kaksonen, Marko; Russell, Robert B.; Gavin, Anne-Claude (2010) A systematic screen for protein–lipid interactions in Saccharomyces cerevisiae. Mol. Syst. Biol. 6 (1) 430.
  • Goursot, A.; Mineva, T.; Bissig, Christin; Gruenberg, Jean; Salahub, D. R. (2010) Structure, Dynamics, and Energetics of Lysobisphosphatidic Acid (LBPA) Isomers. J. Phys. Chem. B 114 (47) 15712-15720.
  • Roux, Aurélien; Plastino, Julie (2010) Actin takes its hat off to dynamin. EMBO J. 29 (21) 3591-3592.
  • Boulais, Jonathan; Trost, Matthias; Landry, Christian R.; Dieckmann, Régis; Levy, Emmanuel D.; Soldati, Thierry; Michnick, Stephen W.; Thibault, Pierre; Desjardins, Michel (2010) Molecular characterization of the evolution of phagosomes. Mol. Syst. Biol. 6 (1) 423.
  • Carvalho, Maria; Schwudke, Dominik; Sampaio, Julio L.; Palm, Wilhelm; Riezman, Isabelle; Dey, Gautam; Gupta, Gagan D.; Mayor, Satyajit; Riezman, Howard; Shevchenko, Andrej; Kurzchalia, Teymuras V.; Eaton, Suzanne (2010) Survival strategies of a sterol auxotroph. Development 137 (21) 3675-3685.
  • Liechti, Robin; Csardi, Gábor; Bergmann, Sven; Schutz, Frédéric; Sengstag, Thierry; Boj, Sylvia F.; Servitja, Joan-Marc; Ferrer, Jorge; Van Lommel, Leentje; Schuit, Frans; Klinger, Sonia; Thorens, Bernard; Naamane, Najib; Eizirik, Decio L.; Marselli, Lorella; Bugliani, Marco; Marchetti, Piero; Lucas, Stephanie; Holm, Cecilia; Jongeneel, C. Victor; Xenarios, Ioannis (2010) EuroDia: a beta-cell gene expression resource. Database baq024.
  • Calvo-Garrido, Javier; Carilla-Latorre, Sergio; Kubohara, Yuzuru; Santos-Rodrigo, Natalia; Mesquita, Ana; Soldati, Thierry; Golstein, Pierre; Escalante, Ricardo (2010) Autophagy in Dictyostelium: Genes and pathways, cell death and infection. Autophagy 6 (6) 686-701.
  • Bourquin, Florence; Riezman, Howard; Capitani, Guido; Grütter, Markus G. (2010) Structure and Function of Sphingosine-1-Phosphate Lyase, a Key Enzyme of Sphingolipid Metabolism. Structure 18 (8) 1054-1065.
  • Liechti, Robin; Gleizes, Anne; Kuznetsov, Dmitry; Bougueleret, Lydie; Le Mercier, Philippe; Bairoch, Amos; Xenarios, Ioannishttp://openflu.vital-it.ch (2010) OpenFluDB, a database for human and animal influenza virus. Database baq004.
  • Mottola, Giovanna; Classen, Anne-Kathrin; Gonzalez-Gaitan, Marcos; Eaton, Suzanne; Zerial, Marino (2010) A novel function for the Rab5 effector Rabenosyn-5 in planar cell polarity. Development 137 (14) 2353-2364.
  • Schupbach, Thierry; Xenarios, Ioannis; Bergmann, Sven; Kapur, Karen (2010) FastEpistasis: a high performance computing solution for quantitative trait epistasis. Bioinformatics 26 (11) 1468-1469.
  • Rivier, Anne-Sophie; Castillon, Guillaume A.; Michon, Laetitia; Fukasawa, Masayoshi; Romanova-Michaelides, Maria; Jaensch, Nina; Hanada, Kentaro; Watanabe, Reika (2010) Exit of GPI-Anchored Proteins from the ER Differs in Yeast and Mammalian Cells. Traffic 11 (8) 1017-1033.
  • Dieckmann, Régis; von Heyden, Yosuke; Kistler, Claudia; Gopaldass, Navin; Hausherr, Stéphanie; Crawley, Scott William; Schwarz, Eva C.; Diensthuber, Ralph P.; Côté, Graham P.; Tsiavaliaris, Georgios; Soldati, Thierry (2010) A Myosin IK-Abp1-PakB Circuit Acts as a Switch to Regulate Phagocytosis Efficiency. Mol. Biol. Cell 21 (9) 1505-1518.
  • Radu, Laura; Durussel, Isabelle; Assairi, Liliane; Blouquit, Yves; Miron, Simona; Cox, Jos A.; Craescu, Constantin T. (2010) Scherffelia dubia Centrin Exhibits a Specific Mechanism for Ca2+-Controlled Target Binding. Biochemistry 49 (20) 4383-4394.
  • Dominiczak, Anna F.; Herget-Rosenthal, Stefan; Delles, Christian; Fliser, Danilo; Fournier, Isabelle; Graber, Armin; Girolami, Mark; Holmes, Elaine; Lang, Florian; Molina, Franck; Nicholson, Jeremy; Remuzzi, Giuseppe; Rossing, Peter; Rudolph, Karl Lenhard; Wolkenhauer, Olaf; Xenarios, Ioannis; Zubarev, Roman; Zubov, Dimitry; Vlahou, Antonia; Schanstra, Joost P. (2010) Systems biology to battle vascular disease. Nephrol., Dial., Transplant. 25 (4) 1019-1022.
  • Pino, Paco; Aeby, Eric; Foth, Bernardo Javier; Sheiner, Lilach; Soldati, Thierry; Schneider, Andre; Soldati-Favre, Dominique (2010) Mitochondrial translation in absence of local tRNA aminoacylation and methionyl tRNAMet formylation in Apicomplexa. Mol. Microbiol. 76 (3) 706-718.
  • Ojha, Mukti; Cattaneo, Arlette; Hugh, Séverine; Pawlowski, Jan; Cox, Jos A. (2010) Structure, expression and function of Allomyces arbuscula CDP II (metacaspase) gene. Gene 457 (1-2) 25-34.
  • Roux, Aurélien; Koster, Gerbrand; Lenz, Martin; Sorre, Benoît; Manneville, Jean-Baptiste; Nassoy, Pierre; Bassereau, Patricia (2010) Membrane curvature controls dynamin polymerization. Proc. Natl. Acad. Sci. U. S. A. 107 (9) 4141-4146.
  • Guan, Xue Li Riezman, Isabelle Wenk, Markus R. Riezman, Howard (2010) Yeast Lipid Analysis and Quantification by Mass Spectrometry. Guide to Yeast Genetics: Functional Genomics, Proteomics, and Other Systems Analysis Volume 470 (Chapter 15)Methods in Enzymology. Elsevier. 369-391.
  • Jungo, Florence; Estreicher, Anne; Bairoch, Amos; Bougueleret, Lydie; Xenarios, Ioannis (2010) Animal Toxins: How is Complexity Represented in Databases?. Toxins 2 (12) 262-282.
  • Cederroth, Christopher R.; Zimmermann, Celine; Beny, Jean-Louis; Schaad, Olivier; Combepine, Chantal; Descombes, Patrick; Doerge, Daniel R.; Pralong, François P.; Vassalli, Jean-Dominique; Nef, Serge (2010) Potential detrimental effects of a phytoestrogen-rich diet on male fertility in mice. Mol. Cell. Endocrinol. 321 (2) 152-160.
  • Guex, Nicolas; Migliavacca, Eugenia; Xenarios, Ioannis (2010) Multiple Imputations Applied to the DREAM3 Phosphoproteomics Challenge: A Winning Strategy. PLoS ONE 5 (1) e8012.
  • Santuari, Luca; Pradervand, Sylvain; Amiguet-Vercher, Amelia-Maria; Thomas, Jerôme; Dorcey, Eavan; Harshman, Keith; Xenarios, Ioannis; Juenger, Thomas E.; Hardtke, Christian S. (2010) Substantial deletion overlap among divergent Arabidopsis genomes revealed by intersection of short reads and tiling arrays. Genome Biol. 11 (1) R4.
  • Tirone, Fabiana; Radu, Laura; Craescu, Constantin T.; Cox, Jos A. (2010) Identification of the Binding Site for the Regulatory Calcium-Binding Domain in the Catalytic Domain of NOX5. Biochemistry 49 (4) 761-771.
  • Berardini, Tanya Z.; Li, Donghui; Huala, Eva; Bridges, Susan; Burgess, Shane; McCarthy, Fiona; Carbon, Seth; Lewis, Suzanna E.; Mungall, Christopher J.; Abdulla, Amina; Wood, Valerie; Feltrin, Erika; Valle, Giorgio; Chisholm, Rex L.; Fey, Petra; Gaudet, Pascale; Kibbe, Warren; Basu, Siddhartha; Bushmanova, Yulia; Eilbeck, Karen; Siegele, Deborah A.; McIntosh, Brenley; Renfro, Daniel; Zweifel, Adrienne; Hu, James C.; Ashburner, Michael; Tweedie, Susan; Alam-Faruque, Yasmin; Apweiler, Rolf; Auchinchloss, Andrea; Bairoch, Amos; Barrell, Daniel; Binns, David; Blatter, Marie-Claude; Bougueleret, Lydie; Boutet, Emmanuel; Breuza, Lionel; Bridge, Alan; Browne, Paul; Chan, Wei Mun; Coudert, Elizabeth; Daugherty, Louis; Dimmer, Emily; Eberhardt, Ruth; Estreicher, Anne; Famiglietti, Livia; Ferro-Rojas, Serenella; Feuermann, Marc; Foulger, Rebecca; Gruaz-Gumowski, Nadine; Hinz, Ursula; Huntley, Rachael; Jimenez, Silvia; Jungo, Florence; Keller, Guillaume; Laiho, kati; Legge, Duncan; Lemercier, Philippe; Lieberherr, Damien; Magrane, Michele; O\'Donovan, Claire; Pedruzzi, Ivo; Poux, Sylvain; Rivoire, Catherine; Roechert, Bernd; Sawford, Tony; Schneider, Michel; Stanley, Eleanor; Stutz, Andre; Sundaram, Shyamala; tognolli, Michael; Xenarios, Ioannis; Harris, Midori A.; Deegan, Jennifer I.; Ireland, Amelia; Lomax, Jane; Jaiswal, Pankaj; Chibucos, Marcus; Gwinn, Michelle; Wortman, Jennifer; Hannick, Linda; Madupu, Ramana; Botstein, David; Dolinski, Kara; Livstone, Michael S.; Oughtred, Rose; blake, Judith A.; Bult, Carol; Diehl, Alexander D.; Dolan, Mary; Drabkin, Harold; Eppig, Janan T.; Hill, David P.; Ni, Li; Ringwald, Martin; Sitnikov, Dmitry; Collmer, Candace; Torto-Alalibo, Trudy; Laulederkind, Stan; Shimoyama, Mary; Twigger, Simon; D\'Eustachio, Peter; Matthews, Lisa; Balakrishnan, Rama; Binkley, Gail; Cherry, J. Michael; Christie, Karen R.; Costanzo, Maria C.; Engel, Stacia R.; Fisk, Dianna, G.; Hirschman, Jodi E.; Hitz, Benjamin C.; Hong, Eurie L.; Krieger, Cynthia J.; Miyasato, Stuart R.; Nash, Robert S.; Park, Julie; Skrzypek, Marek, S.; Weng, Shuai; Wong, Edith D.; Aslett, martin; Chan, Juancarlos; Kishore, Ranjana; Sternberg, Paul; Van Auken, Kimberly; Khodiyar, Varsha K.; Lovering, Ruth C.; Talmud, Philippa J.; Howe, Doug; Westerfield, Monte (2010) The Gene Ontology in 2010: extensions and refinements. Nucleic Acids Res. 38 (suppl 1) D331-D335.
  • Apweiler, Rolf; Jesus Martin, Maria; O\'Donovan, Claire; Magrane, Michele; Alam-Faruque, Yasmin; Antunes, Ricardo; Barrell, Daniel; Bely, Benoit; Bingley, Mark; Binns, David; Bower, Lawrence; Browne, Paul; Chan, Wei Mun; Dimmer, Emily; Eberhardt, Ruth; Fedotov, Alexander; Foulger, Rebecca; Garavelli, John; Huntley, Rachael; Jacobsen, Julius; Kleen, Michael; Laiho, Kati; Leinonen, Rasko; Legge, Duncan; Lin, Quan; Liu, Wudong; Luo, Jie; Orchard, Sandra; Patient, Samuel; Poggioli, Diego; Pruess, Manuela; Corbett, Matt; di Martino, Giuseppe; Donnelly, Mike; van Rensburg, Pieter; Bairoch, Amos; Bougueleret, Lydie; Xenarios, Ioannis; Altairac, Severine; Auchincloss, Andrea; Argoud-Puy, Ghislaine; Axelsen, Kristian; Baratin, Delphine; Blatter, Marie-Claude; Boeckmann, Brigitte; Bolleman, Jerven; Bollondi, Laurent; Boutet, Emmanuel; Quintaje, Silvia Braconi; Breuza, Lionel; Bridge, Alan; deCastro, Edouard; Ciapina, Luciane; Coral, Danielle; Coudert, Elisabeth; Cusin, isabelle; Delbard, Gwennaelle; Doche, Mikael; Dornevil, Dolnide; Roggli, Paula Duek; Duvaud, Severine; Estreicher, Anne; Famiglietti, Livia; Feuermann, Marc; Gehant, Sebastien; Farriol-Mathis, Natalie; Ferro, Serenella; Gasteiger, Elisabeth; Gateau, Alain; Gerritsen, Vivienne; Gos, Arnaud; Gruaz-Gumowski, Nadine; Hinz, Ursula; Hula, Chantal; Hulo, Nicolas; James, Janet; Jimenez, Silvia; Jungo, Florence; Kappler, thomas; Keller, Guillaume; Lachaize, Corinne; Lane-Guermonprez, Lydie; Langendijk-Genevauz, Petra; Lara, Vicente; Lemercier, Philippe; Lieberherr, Damien; de Oliveira Lima, Tania; Mangold, Veronique; Martin, Xavier; Masson, Patrick; Moinat, Madelaine; Morgat, Anne; Mottaz, Anais; Paesano, Salvo; Pedruzzi, ivo; Pilbout, Sandrine; Pillet, Violaine; Poux, Sylvain; Pozzato, Monica; Redaschi, Nicole; Rivoire, Catherine; Roechert, Bernd; Schneider, Michel; Sigrist, Christian; Sonesson, Karin; Staehli, Sylvie; Stanley, Eleanor; Stutz, Andre; Sundaram, Shyamala; Tognolli, Michael; Verbregue, Laure; Veuthey, Anne-Lise; Yip, Lina; Zuletta, Laure; Wu, Cathy; Arighi, Cecilia; Arminski, Leslie; Barker, Winona; Chen, Chuming; Chen, Yongxing; Hu, Zhang-Zhi; Huang, Hongzhan; Mazumder, Raja; McGarvey, Peter; Natale, Darren A.; Nchoutmboube, Jules; Petrova, Natalia; Subramanian, Nisha; Suzek, Baris E.; Ugochukwu, Uzoamaka; Vasudevan, Sona; Vinayaka, C. R.; Yeh, Lai Su; Zhang, Jian (2010) The Universal Protein Resource (UniProt) in 2010. Nucleic Acids Res. 38 (suppl 1) D142-D148.

2009

  • González-Gaitán, Marcos; Gruenberg, Jean; Halazonetis, Thanos; Laemmli, Ulrich K.; Matter, Jean-Marc; Riezman, Howard; Schaad, Olivier; Soldati, Thierry; Watanabe, Reika (2009) The Biochemistry Department of the University of Geneva: Understanding the Molecular Basis and Function of Intracellular Organization. CHIMIA 63 (12) 830-834.
  • Deshusses, Jacques; Riezman, Howard (2009) History of Biochemistry at the University of Geneva: From the Boulevard des Philosophes to Quai Ernest-Ansermet. CHIMIA 63 (12) 826-829.
  • Ortiz, Millan; Guex, Nicolas; Patin, Etienne; Martin, Olivier; Xenarios, Ioannis; Ciuffi, Angela; Quintana-Murci, Lluis; Telenti, Amalio (2009) Evolutionary Trajectories of Primate Genes Involved in HIV Pathogenesis. Mol. Biol. Evol. 26 (12) 2865-2875.
  • Skowronska-Krawczyk, Dorota; Chiodini, Florence; Ebeling, Martin; Alliod, Christine; Kundzewicz, Adam; Castro, Diogo; Ballivet, Marc; Guillemot, François; Matter-Sadzinski, Lidia; Matter, Jean-Marc (2009) Conserved regulatory sequences in Atoh7 mediate non-conserved regulatory responses in retina ontogenesis. Development 136 (22) 3767-3777.
  • Lenz, Martin; Morlot, Sandrine; Roux, Aurélien (2009) Mechanical requirements for membrane fission: Common facts from various examples. FEBS Lett. 583 (23) 3839-3846.
  • Fürthauer, Maximilian; González-Gaitán, Marcos (2009) Endocytosis and mitosis: A two-way relationship. Cell Cycle 8 (20) 3311-3318.
  • Kahlem, Pascal; Clegg, Andrew; Reisinger, Florian; Xenarios, Ioannis; Hermjakob, Henning; Orengo, Christine; Birney, Ewan (2009) ENFIN – A European network for integrative systems biology. C. R. Biol. 332 (11) 1050-1058.
  • Bittig, T.; Wartlick, Ortrud; González-Gaitán, Marcos; Jülicher, Frank (2009) Quantification of growth asymmetries in developing epithelia. Eur. Phys. J. E 30 (1) 93-99.
  • Le Martelot, Gwendal; Claudel, Thierry; Gatfield, David; Schaad, Olivier; Kornmann, Benoît; Sasso, Giuseppe Lo; Moschetta, Antonio; Schibler, Ueli; Vidal-Puig, Antonio J. (2009) REV-ERBα Participates in Circadian SREBP Signaling and Bile Acid Homeostasis. PLoS Biol. 7 (9) e1000181.
  • Bugliani, Marco; Masini, Matilde; Liechti, Robin; Marselli, Lorella; Xenarios, Ioannis; Boggi, Ugo; Filipponi, Franco; Masiello, Pellegrino; Marchetti, Piero (2009) The direct effects of tacrolimus and cyclosporin A on isolated human islets: A functional, survival and gene expression study. Islets 1 (2) 106-110.
  • Wartlick, Ortrud; Kicheva, Anna; Gonzalez-Gaitan, Marcos (2009) Morphogen Gradient Formation. Cold Spring Harbor Perspect. Biol. 1 (3) a001255-a001255.
  • Dieckmann, Régis Soldati, Thierry (2009) Phagosome Proteomes Unite! A Virtual Model of Maturation as a Tool to Study Pathogen-Induced Changes. Intracellular Niches of Microbes: A Pathogens Guide Through the Host Cell (Chapter 7)Ed. Schaible, Ulrich E. Haas, AlbertWiley-VCH. (Weinheim). 107-124.
  • Hagedorn, Monica Soldati, Thierry (2009) Mycobacterium Marinum. Intracellular Niches of Microbes: A Pathogens Guide Through the Host Cell (Chapter 25)Ed. Schaible, Ulrich E. Haas, AlbertWiley-VCH. (Weinheim). 455-467.
  • Oates, Andrew C.; Gorfinkiel, Nicole; González-Gaitán, Marcos; Heisenberg, Carl-Philipp (2009) Quantitative approaches in developmental biology. Nat. Rev. Genet. 10 (8) 517-530.
  • Castillon, Guillaume A. Riezman, Howard (2009) Transport of GPI-Anchored Proteins: Connections to Sphingolipid and Sterol Transport. Glycosylphosphatidylinositol (GPI) Anchoring of Proteins Vol. 26 (Chapter 13)Ed. Menon, Anant Kumar Kinoshita, Taroh Orlean, Peter Tamanoi, FuyuhikoThe Enzymes. Elsevier. 269-288.
  • Gattiker, Alexandre; Dessimoz, Christophe; Schneider, Adrian; Xenarios, Ioannis; Pagni, Marco; Rougemont, Jacques (2009) The Microbe browser for comparative genomics. Nucleic Acids Res. 37 (suppl 2) W296-W299.
  • Hannich, J. Thomas; Entchev, Eugeni V.; Mende, Fanny; Boytchev, Hristio; Martin, René; Zagoriy, Vyacheslav; Theumer, Gabriele; Riezman, Isabelle; Riezman, Howard; Knölker, Hans-Joachim; Kurzchalia, Teymuras V. (2009) Methylation of the Sterol Nucleus by STRM-1 Regulates Dauer Larva Formation in Caenorhabditis elegans. Dev. Cell 16 (6) 833-843.
  • Garg, Abhishek; Mohanram, Kartik; Di Cara, Alessandro; De Micheli, Giovanni; Xenarios, Ioannis (2009) Modeling stochasticity and robustness in gene regulatory networks. Bioinformatics 25 (12) i101-i109.
  • Fürthauer, Maximilian; González-Gaitán, Marcos (2009) Tales of 1001 Functions: The Multiple Roles of Membrane Trafficking in Development. Traffic 10 (7) 781-782.
  • Fürthauer, Maximilian; González-Gaitán, Marcos (2009) Endocytosis, asymmetric cell division, stem cells and cancer: Unus pro omnibus, omnes pro uno. Mol. Oncol. 3 (4) 339-353.
  • Gatfield, David; Le Martelot, Gwendal; Vejnar, Charles E.; Gerlach, Daniel; Schaad, Olivier; Fleury-Olela, Fabienne; Ruskeepää, Anna-Liisa; Oresic, Matej; Esau, Christine C.; Zdobnov, Evgeny M.; Schibler, Ueli (2009) Integration of microRNA miR-122 in hepatic circadian gene expression. Development 23 (11) 1313-1326.
  • Gattiker, Alexandre; Hermida, Leandro; Liechti, Robin; Xenarios, Ioannis; Collin, Olivier; Rougemont, Jacques; Primig, Michael (2009) MIMAS 3.0 is a Multiomics Information Management and Annotation System. BMC Bioinf. 10 (1) 151.
  • Gruenberg, Jean (2009) Viruses and endosome membrane dynamics. Curr. Opin. Cell Biol. 21 (4) 582-588.
  • Fürthauer, Maximilian; González-Gaitán, Marcos (2009) Endocytic Regulation of Notch Signalling During Development. Traffic 10 (7) 792-802.
  • Menuz, Vincent; Howell, Kate S.; Gentina, Sébastien; Epstein, Sharon; Riezman, Isabelle; Fornallaz-Mulhauser, Monique; Hengartner, Michael O.; Gomez, Marie; Riezman, Howard; Martinou, Jean-Claude (2009) Protection of C. elegans from Anoxia by HYL-2 Ceramide Synthase. Science 324 (5925) 381-384.
  • Hagedorn, Monica; Rohde, Kyle H.; Russell, David G.; Soldati, Thierry (2009) Infection by Tubercular Mycobacteria Is Spread by Nonlytic Ejection from Their Amoeba Hosts. Science 323 (5922) 1729-1733.
  • Coumailleau, Franck; Fürthauer, Maximilian; Knoblich, J. A.; González-Gaitán, Marcos (2009) Directional Delta and Notch trafficking in Sara endosomes during asymmetric cell division. Nature 458 (7241) 1051-1055.
  • Morel, Etienne; Parton, Robert G.; Gruenberg, Jean (2009) Annexin A2-Dependent Polymerization of Actin Mediates Endosome Biogenesis. Dev. Cell 16 (3) 445-457.
  • Guan, Xue Li; Souza, Cleiton M.; Pichler, Harald; Dewhurst, Gisèle; Schaad, Olivier; Kajiwara, Kentaro; Wakabayashi, Hirotomo; Ivanova, Tania; Castillon, Guillaume A.; Piccolis, Manuele; Abe, Fumiyoshi; Loewith, Robbie; Funato, Kouichi; Wenk, Markus R.; Riezman, Howard (2009) Functional Interactions between Sphingolipids and Sterols in Biological Membranes Regulating Cell Physiology. Mol. Biol. Cell 20 (7) 2083-2095.
  • Martin, Olivier; Valsesia, Armand; Telenti, Amalio; Xenarios, Ioannis; Stevenson, Brian J. (2009) AssociationViewer: a scalable and integrated software tool for visualization of large-scale variation data in genomic context. Bioinformatics 25 (5) 662-663.
  • Falguières, Thomas; Luyet, Pierre-Philippe; Gruenberg, Jean (2009) Molecular assemblies and membrane domains in multivesicular endosome dynamics. Exp. Cell Res. 315 (9) 1567-1573.
  • Papaioannou, Marilena D.; Pitetti, Jean-Luc; Ro, Seungil; Park, Chanjae; Aubry, Florence; Schaad, Olivier; Vejnar, Charles E.; Kühne, Francoise; Descombes, Patrick; Zdobnov, Evgeny M.; McManus, Michael T.; Guillou, Florian; Harfe, Brian D.; Yan, Wei; Jégou, Bernard; Nef, Serge (2009) Sertoli cell Dicer is essential for spermatogenesis in mice. Dev. Biol. 326 (1) 250-259.
  • Castillon, Guillaume A.; Watanabe, Reika; Taylor, Marcia; Schwabe, Tatjana M. E.; Riezman, Howard (2009) Concentration of GPI-Anchored Proteins upon ER Exit in Yeast. Traffic 10 (2) 186-200.
  • Ramirez, Jean-Marie; Schaad, Olivier; Durual, Stephane; Cossali, Dominique; Docquier, Mylène; Beris, Photis; Descombes, Patrick; Matthes, Thomas (2009) Growth differentiation factor 15 production is necessary for normal erythroid differentiation and is increased in refractory anaemia with ring-sideroblasts. Br. J. Haematol. 144 (2) 251-262.
  • Peralta, Susana; Gómez, Yolanda; González-Gaitán, Marcos A.; Moya, Fernando; Vinós, Javier (2009) Notch down-regulation by endocytosis is essential for pigment cell determination and survival in the Drosophila retina. Mech. Dev. 126 (3-4) 256-269.
  • Morel, Etienne; Gruenberg, Jean (2009) Annexin A2 Binding to Endosomes and Functions in Endosomal Transport Are Regulated by Tyrosine 23 Phosphorylation. J. Biol. Chem. 284 (3) 1604-1611.

2008

  • Roux, Aurélien; Antonny, Bruno (2008) The Long and Short of Membrane Fission. Cell 135 (7) 1163-1165.
  • Rougemont, Jacques; Amzallag, Arnaud; Iseli, Christian; Farinelli, Laurent; Xenarios, Ioannis; Naef, Felix (2008) Probabilistic base calling of Solexa sequencing data. BMC Bioinf. 9 (1) 431.
  • Falguieres, Thomas; Luyet, Pierre-Philippe; Bissig, Christin; Scott, Cameron C.; Velluz, Marie-Claire; Gruenberg, Jean (2008) In Vitro Budding of Intralumenal Vesicles into Late Endosomes Is Regulated by Alix and Tsg101. Mol. Biol. Cell 19 (11) 4942-4955.
  • Pons, Véronique; Luyet, Pierre-Philippe; Morel, Etienne; Abrami, Laurence; van der Goot, F. Gisou; Parton, Robert G; Gruenberg, Jean; Pfeffer, Suzanne (2008) Hrs and SNX3 Functions in Sorting and Membrane Invagination within Multivesicular Bodies. PLoS Biol. 9 (9) 1942-1956.
  • Watanabe, Reika; Castillon, Guillaume A.; Meury, Anja; Riezman, Howard (2008) The presence of an ER exit signal determines the protein sorting upon ER exit in yeast. Biochem. J. 414 (2) 237-245.
  • Haruki, Hirohito; Nishikawa, Junichi; Laemmli, Ulrich K. (2008) The Anchor-Away Technique: Rapid, Conditional Establishment of Yeast Mutant Phenotypes. Mol. Cell 31 (6) 925-932.
  • Luyet, Pierre-Philippe; Falguières, Thomas; Pons, Véronique; Pattnaik, Asit K.; Gruenberg, Jean (2008) The ESCRT-I Subunit TSG101 Controls Endosome-to-Cytosol Release of Viral RNA. Traffic 9 (12) 2279-2290.
  • Gonzalez-Gaitan, Marcos (2008) The Garden of Forking Paths: Recycling, Signaling, and Degradation. Dev. Cell 15 (2) 172-174.
  • Krauss, Michael; Jia, Jun-Yong; Roux, Aurélien; Beck, Rainer; Wieland, Felix T.; De Camilli, Pietro; Haucke, Volker (2008) Arf1-GTP-induced Tubule Formation Suggests a Function of Arf Family Proteins in Curvature Acquisition at Sites of Vesicle Budding. J. Biol. Chem. 283 (41) 27717-27723.
  • Heng, Julian Ik-Tsen; Nguyen, Laurent; Castro, Diogo S.; Zimmer, Céline; Wildner, Hendrik; Armant, Olivier; Skowronska-Krawczyk, Dorota; Bedogni, Francesco; Matter, Jean-Marc; Hevner, Robert; Guillemot, François (2008) Neurogenin 2 controls cortical neuron migration through regulation of Rnd2. Nature 455 (7209) 114-118.
  • Cataldo, Anne M.; Mathews, Paul M.; Boiteau, Anne Boyer; Hassinger, Linda C.; Peterhoff, Corrinne M.; Jiang, Ying; Mullaney, Kerry; Neve, Rachael L.; Gruenberg, Jean; Nixon, Ralph A. (2008) Down Syndrome Fibroblast Model of Alzheimer-Related Endosome Pathology. Am. J. Pathol. 173 (2) 370-384.
  • Taylor, Chris F.; Binz, Pierre-Alain; Aebersold, Ruedi; Affolter, Michel; Barkovich, Robert; Deutsch, Eric W.; Horn, David M.; Hühmer, Andreas; Kussmann, Martin; Lilley, Kathryn; Macht, Marcus; Mann, Matthias; Müller, Dieter; Neubert, Thomas A.; Nickson, Janice; Patterson, Scott D.; Raso, Roberto; Resing, Kathryn; Seymour, Sean L.; Tsugita, Akira; Xenarios, Ioannis; Zeng, Rong; Julian, Randall K. (2008) Correspondence: Guidelines for reporting the use of mass spectrometry in proteomics. Nat. Biotechnol. 26 (8) 860-861.
  • Garg, Abhishek; Di Cara, Alessandro; Xenarios, Ioannis; Mendoza, Luis; De Micheli, Giovanni (2008) Synchronous versus asynchronous modeling of gene regulatory networks. Bioinformatics 24 (17) 1917-1925.
  • Cosson, Pierre; Soldati, Thierry (2008) Eat, kill or die: when amoeba meets bacteria. Curr. Opin. Microbiol. 11 (3) 271-276.
  • Coumailleau, Franck; González-Gaitán, Marcos (2008) From endocytosis to tumors through asymmetric cell division of stem cells. Curr. Opin. Cell Biol. 20 (4) 462-469.
  • Moretti, Sébastien; Wilm, Andreas; Higgins, Desmond G.; Xenarios, Ioannis; Notredame, Cédric (2008) R-Coffee: a web server for accurately aligning noncoding RNA sequences. Nucleic Acids Res. 36 (suppl 2) W10-W13.
  • Mitrovic, Sandra; Ben-Tekaya, Houchaima; Koegler, Eva; Gruenberg, Jean; Hauri, Hans-Peter (2008) The Cargo Receptors Surf4, Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)-53, and p25 Are Required to Maintain the Architecture of ERGIC and Golgi. Mol. Biol. Cell 19 (5) 1976-1990.
  • Mukhopadhyay, Debdyuti; Howell, Kate S.; Riezman, Howard; Capitani, Guido (2008) Identifying Key Residues of Sphinganine-1-phosphate Lyase for Function in Vivo and in Vitro. J. Biol. Chem. 283 (29) 20159-20169.
  • Van Eyk, Jennifer E. Dunn, Michael J. Vaezzadeh, Ali R. Zimmermann-Ivol, Catherine G. Deshusses, Jacques Scherl, Alexander Hochstrasser, Denis F. (2008) IEF Analysis of Peptides for Biomarkers Discovery. Clinical Proteomics: From Diagnosis to Therapy (Chapter 5)Ed. Van Eyk, Jennifer E. Dunn, Michael J.Wiley-VCH Verlag GmbH & Co. KGaA. (Weinheim, Germany). 61-71.
  • Kaksonen, Marko (2008) Taking apart the endocytic machinery. J. Cell Biol. 180 (6) 1059-1060.
  • Idrissi, Fatima-Zahra; Grötsch, Helga; Fernández-Golbano, Isabel M.; Presciatto-Baschong, Cristina; Riezman, Howard; Geli, María-Isabel (2008) Distinct acto/myosin-I structures associate with endocytic profiles at the plasma membrane. J. Cell Biol. 180 (6) 1219-1232.
  • Kicheva, Anna; González-Gaitán, Marcos (2008) The Decapentaplegic morphogen gradient: a precise definition. Curr. Opin. Cell Biol. 20 (2) 137-143.
  • Frost, Adam; Perera, Rushika; Roux, Aurélien; Spasov, Krasimir; Destaing, Olivier; Egelman, Edward H.; De Camilli, Pietro; Unger, Vinzenz M. (2008) Structural Basis of Membrane Invagination by F-BAR Domains. Cell 132 (5) 807-817.
  • Kajiwara, Kentaro; Watanabe, Reika; Pichler, Harald; Ihara, Kensuke; Murakami, Suguru; Riezman, Howard; Funato, Kouichi (2008) Yeast ARV1 Is Required for Efficient Delivery of an Early GPI Intermediate to the First Mannosyltransferase during GPI Assembly and Controls Lipid Flow from the Endoplasmic Reticulum. Mol. Biol. Cell 19 (5) 2069-2082.
  • Aguilera-Romero, Auxiliadora; Kaminska, Joanna; Spang, Anne; Riezman, Howard; Muñiz, Manuel (2008) The yeast p24 complex is required for the formation of COPI retrograde transport vesicles from the Golgi apparatus. J. Cell Biol. 13 (4) 5539-720.
  • Bollenbach, Tobias; Pantazis, Periklis; Kicheva, Anna; Bökel, Christian; González-Gaitán, Marcos; Jülicher, Frank (2008) Precision of the Dpp gradient. Development 135 (6) 1137-1146.
  • Favre-Kontula, Linda; Sattonnet-Roche, Pascale; Magnenat, Edith; Proudfoot, Amanda E. I.; Boschert, Ursula; Xenarios, Ioannis; Vilbois, Francis; Antonsson, Bruno (2008) Detection and identification of plasma proteins that bind GlialCAM using ProteinChip™ Arrays, SELDI-TOF MS, and nano-LC MS/MS. Proteomics 8 (2) 378-388.
  • Dieckmann, Régis Gopaldass, Navin Escalera, Caroline Soldati, Thierry (2008) Maturation Changes in Purified Phagosomes. Autophagosome and Phagosome Vol. 445Ed. Deretic, VojoMethods in Molecular Biology. Humana Press. 327-337.
  • Kundzewicz, Adam Munier, Francis Matter, Jean-Marc (2008) Expression and Cell Compartmentalization of EFEMP1, a Protein Associated with Malattia Leventinese. Recent Advances in Retinal Degeneration Vol. 613 (Part VI)Ed. Anderson, Robert E. LaVail, Matthew M. Hollyfield, Joe G.Advances in Experimental Medicine and Biology. Springer. (New York). 277-282.
  • te Welscher, Yvonne M.; ten Napel, Hendrik H.; Balagué, Miriam Masià; Souza, Cleiton M.; Riezman, Howard; de Kruijff, Ben; Breukink, Eefjan (2008) Natamycin Blocks Fungal Growth by Binding Specifically to Ergosterol without Permeabilizing the Membrane. J. Biol. Chem. 283 (10) 6393-6401.

2007

  • Hernandez, Julio; Matter-Sadzinski, Lidia; Skowronska-Krawczyk, Dorota; Chiodini, Florence; Alliod, Christine; Ballivet, Marc; Matter, Jean-Marc (2007) Highly Conserved Sequences Mediate the Dynamic Interplay of Basic Helix-Loop-Helix Proteins Regulating Retinogenesis. J. Biol. Chem. 282 (52) 37894-37905.
  • Dyer, Naomi; Rebollo, Elena; Dominguez, Paloma; Elkhatib, Nadia; Chavrier, Philippe; Daviet, Laurent; Gonzalez, Cayetano; Gonzalez-Gaitan, Marcos (2007) Spermatocyte cytokinesis requires rapid membrane addition mediated by ARF6 on central spindle recycling endosomes. Development 134 (24) 4437-4447.
  • Di Cara, Alessandro; Garg, Abhishek; De Micheli, Giovanni; Xenarios, Ioannis; Mendoza, Luis (2007) Dynamic simulation of regulatory networks using SQUAD. BMC Bioinf. 8 (1) 462.
  • Felberbaum-Corti, Michela; Morel, Etienne; Cavalli, Valeria; Vilbois, Francis; Gruenberg, Jean; Steinhardt, Richard (2007) The Redox Sensor TXNL1 Plays a Regulatory Role in Fluid Phase Endocytosis. PLoS ONE 2 (11) e1144.
  • Hagedorn, Monica; Soldati, Thierry (2007) Erratum: Flotillin and RacH modulate the intracellular immunity of Dictyostelium to Mycobacterium marinum infection. Cell Microbiol. 9 (12) 2984.
  • Luyet, Pierre-Philippe; Falguières, Thomas; Pons, Véronique; Gruenberg, Jean (2007) Endosomal Membrane Dynamics. J. Oral Biosci. 49 (4) 231-243.
  • Morel, Etienne; Gruenberg, Jean; Steinhardt, Richard (2007) The p11/S100A10 Light Chain of Annexin A2 Is Dispensable for Annexin A2 Association to Endosomes and Functions in Endosomal Transport. PLoS ONE 2 (10) e1118.
  • Kerrien, Samuel; Orchard, Sandra; Montecchi-Palazzi, Luisa; Aranda, Bruno; Quinn, Antony F; Vinod, Nisha; Bader, Gary D; Xenarios, Ioannis; Wojcik, Jérôme; Sherman, David; Tyers, Mike; Salama, John J; Moore, Susan; Ceol, Arnaud; Chatr-aryamontri, Andrew; Oesterheld, Matthias; Stümpflen, Volker; Salwinski, Lukasz; Nerothin, Jason; Cerami, Ethan; Cusick, Michael E; Vidal, Marc; Gilson, Michael; Armstrong, John; Woollard, Peter; Hogue, Christopher; Eisenberg, David; Cesareni, Gianni; Apweiler, Rolf; Hermjakob, Henning (2007) Broadening the horizon – level 2.5 of the HUPO-PSI format for molecular interactions. BMC Biol. 5 (1) 44.
  • Del Bene, Filippo; Ettwiller, Laurence; Skowronska-Krawczyk, Dorota; Baier, Herwig; Matter, Jean-Marc; Birney, Ewan; Wittbrodt, Joachim (2007) In Vivo Validation of a Computationally Predicted Conserved Ath5 Target Gene Set. PLoS Genet. 427 (9) 1661-1671.
  • Sobo, Komla; Le Blanc, Isabelle; Luyet, Pierre-Philippe; Fivaz, Marc; Ferguson, Charles; Parton, Robert G.; Gruenberg, Jean; van der Goot, F. Gisou; Valdivia, Raphael (2007) Late Endosomal Cholesterol Accumulation Leads to Impaired Intra-Endosomal Trafficking. PLoS ONE 2 (9) e851.
  • Pino, Paco; Foth, Bernardo Javier; Kwok, Lai-Yu; Sheiner, Lilach; Schepers, Rebecca; Soldati, Thierry; Soldati-Favre, Dominique (2007) Dual Targeting of Antioxidant and Metabolic Enzymes to the Mitochondrion and the Apicoplast of Toxoplasma gondii. PLoS Pathog. 3 (8) 1092-1108.
  • Pantazis, Periklis; González-Gaitán, Marcos (2007) Localized multiphoton photoactivation of paGFP in Drosophila wing imaginal discs. J. Biomed. Opt. 12 (4) 044004.
  • Riezman, Howard (2007) The Long and Short of Fatty Acid Synthesis. Cell 130 (4) 587-588.
  • Taylor, Chris F.; Paton, Norman W.; Lilley, Kathryn S.; Binz, Pierre-Alain; Julian, Randall K.; Jones, Andrew R.; Zhu, Weimin; Apweiler, Rolf; Aebersold, Ruedi; Deutsch, Eric W.; Dunn, Michael J.; Heck, Albert J. R.; Leitner, Alexander; Macht, Marcus; Mann, Matthias; Martens, Lennart; Neubert, Thomas A.; Patterson, Scott D.; Ping, Peipei; Seymour, Sean L.; Souda, Puneet; Tsugita, Akira; Vandekerckhove, Joel; Vondriska, Thomas M.; Whitelegge, Julian P.; Wilkins, Marc R.; Xenarios, Ioannnis; Yates, John R.; Hermjakob, Henning (2007) The minimum information about a proteomics experiment (MIAPE). Nat. Biotechnol. 25 (8) 887-893.
  • Orchard, Sandra; Salwinski, Lukasz; Kerrien, Samuel; Montecchi-Palazzi, Luisa; Oesterheld, Matthias; Stümpflen, Volker; Ceol, Arnaud; Chatr-aryamontri, Andrew; Armstrong, John; Woollard, Peter; Salama, John J.; Moore, Susan; Wojcik, Jérôme; Bader, Gary D.; Vidal, Marc; Cusick, Michael E.; Gerstein, Mark; Gavin, Anne-Claude; Superti-Furga, Giulio; Greenblatt, Jack; Bader, Joel; Uetz, Peter; Tyers, Mike; Legrain, Pierre; Fields, Stan; Mulder, Nicola; Gilson, Michael; Niepmann, Michael; Burgoon, Lyle; Rivas, Javier De Las; Prieto, Carlos; Perreau, Victoria M.; Hogue, Chris; Mewes, Hans-Werner; Apweiler, Rolf; Xenarios, Ioannis; Eisenberg, David; Cesareni, Gianni; Hermjakob, Henning (2007) The minimum information required for reporting a molecular interaction experiment (MIMIx). Nat. Biotechnol. 25 (8) 894-898.
  • Pasquali, Christian; Bertschy-Meier, Dominique; Chabert, Christian; Curchod, Marie-Laure; Arod, Christian; Booth, Randy; Mechtler, Karl; Vilbois, Francis; Xenarios, Ioannis; Ferguson, Colin G.; Prestwich, Glenn D.; Camps, Montserrat; Rommel, Christian (2007) A Chemical Proteomics Approach to Phosphatidylinositol 3-Kinase Signaling in Macrophages. Mol. Cell. Proteomics 6 (11) 1829-1841.
  • Sbrissa, Diego; Ikonomov, Ognian C.; Fu, Zhiyao; Ijuin, Takeshi; Gruenberg, Jean; Takenawa, Tadaomi; Shisheva, Assia (2007) Core Protein Machinery for Mammalian Phosphatidylinositol 3,5-Bisphosphate Synthesis and Turnover That Regulates the Progression of Endosomal Transport. J. Biol. Chem. 282 (33) 23878-23891.
  • Urban, Jörg; Soulard, Alexandre; Huber, Alexandre; Lippman, Soyeon; Mukhopadhyay, Debdyuti; Deloche, Olivier; Wanke, Valeria; Anrather, Dorothea; Ammerer, Gustav; Riezman, Howard; Broach, James R.; De Virgilio, Claudio; Hall, Michael N.; Loewith, Robbie (2007) Sch9 Is a Major Target of TORC1 in Saccharomyces cerevisiae. Molecular Cell 26 (5) 663-674.
  • Hagedorn, Monica; Soldati, Thierry (2007) Flotillin and RacH modulate the intracellular immunity of Dictyostelium to Mycobacterium marinum infection. Cell Microbiol. 9 (11) 2716-2733.
  • Roux, Aurélien; Biais, Nicolas; Bassereau, Patricia (2007) Import-export dans la cellule. Pour la Science (355) 46-52.
  • Sobo, Komla; Chevallier, Julien; Parton, Robert G.; Gruenberg, Jean; van der Goot, F. Gisou; Valdivia, Raphael (2007) Diversity of Raft-Like Domains in Late Endosomes. PLoS ONE 2 (4) e391.
  • Sun, Yidi; Carroll, Susheela; Kaksonen, Marko; Toshima, Junko Y.; Drubin, David G. (2007) PtdIns(4,5)P2 turnover is required for multiple stages during clathrin- and actin-dependent endocytic internalization. J. Cell Biol. 177 (2) 355-367.
  • Tirone, Fabiana; Cox, Jos A. (2007) NADPH oxidase 5 (NOX5) interacts with and is regulated by calmodulin. FEBS Lett. 581 (6) 1202-1208.
  • Kornmann, Benoît; Schaad, Olivier; Bujard, Hermann; Takahashi, Joseph S.; Schibler, Ueli; O\'Rahilly, Steve (2007) System-Driven and Oscillator-Dependent Circadian Transcription in Mice with a Conditionally Active Liver Clock. PLoS Biol. 6 (2) e34.
  • Kicheva, Anna; Pantazis, Periklis; Bollenbach, Tobias; Kalaidzidis, Yannis; Bittig, Thomas; Julicher, Frank; Gonzalez-Gaitan, Marcos (2007) Kinetics of Morphogen Gradient Formation. Science 315 (5811) 521-525.
  • Mukhopadhyay, Debdyuti; Riezman, Howard (2007) Proteasome-Independent Functions of Ubiquitin in Endocytosis and Signaling. Science 315 (5809) 201-205.
  • Bollenbach, Tobias; Kruse, K.; Pantazis, Periklis; González-Gaitán, Marcos; Jülicher, Frank (2007) Morphogen transport in epithelia. Phys. Rev. E 75 (1) 011901.
  • Kornmann, Benoit; Schaad, Olivier; Reinke, H.; Saini, C.; Schibler, Ueli (2007) Regulation of Circadian Gene Expression in Liver by Systemic Signals and Hepatocyte Oscillators. Cold Spring Harbor Symp. Quant. Biol. 72 319-330.
  • Pellissier, François; Gerber, Alan; Bauer, Christoph; Ballivet, Marc; Ossipow, Vincent (2007) The adhesion molecule Necl-3/SynCAM-2 localizes to myelinated axons, binds to oligodendrocytes and promotes cell adhesion. BMC Neurosci. 8 (1) 90.

2006

  • Soldati, Thierry; Schliwa, Manfred (2006) Powering membrane traffic in endocytosis and recycling. Nat. Rev. Mol. Cell Biol. 7 (12) 897-908.
  • Castro, Diogo S.; Skowronska-Krawczyk, Dorota; Armant, Olivier; Donaldson, Ian J.; Parras, Carlos; Hunt, Charles; Critchley, James A.; Nguyen, Laurent; Gossler, Achim; Göttgens, Berthold; Matter, Jean-Marc; Guillemot, François (2006) Proneural bHLH and Brn Proteins Coregulate a Neurogenic Program through Cooperative Binding to a Conserved DNA Motif. Dev. Cell 11 (6) 831-844.
  • Brissoni, Brian; Agostini, Laetitia; Kropf, Michel; Martinon, Fabio; Swoboda, Valentin; Lippens, Saskia; Everett, Helen; Aebi, Natalia; Janssens, Sophie; Meylan, Etienne; Felberbaum-Corti, Michela; Hirling, Harald; Gruenberg, Jean; Tschopp, Jürg; Burns, Kimberly (2006) Intracellular Trafficking of Interleukin-1 Receptor I Requires Tollip. Curr. Biol. 16 (22) 2265-2270.
  • Bökel, Christian; Schwabedissen, Anja; Entchev, Eugeni; Renaud, Olivier; Gonzalez-Gaitan, Marcos (2006) Sara Endosomes and the Maintenance of Dpp Signaling Levels Across Mitosis. Science 314 (5802) 1135-1139.
  • Sturchler, Emmanuel; Cox, Jos A.; Durussel, Isabelle; Weibel, Mirjam; Heizmann, Claus W. (2006) S100A16, a Novel Calcium-binding Protein of the EF-hand Superfamily. J. Biol. Chem. 281 (50) 38905-38917.
  • Kaksonen, Marko; Drubin, David G. (2006) PALM Reading: Seeing the Future of Cell Biology at Higher Resolution. Dev. Cell 11 (4) 438-439.
  • Gotthardt, Daniel; Blancheteau, Vincent; Bosserhoff, Armin; Ruppert, Thomas; Delorenzi, Mauro; Soldati, Thierry (2006) Proteomics Fingerprinting of Phagosome Maturation and Evidence for the Role of a Gα during Uptake. Mol. Cell. Proteomics 5 (12) 2228-2243.
  • Gurcel, Laure; Abrami, Laurence; Girardin, Stephen; Tschopp, Jurg; van der Goot, F. Gisou (2006) Caspase-1 Activation of Lipid Metabolic Pathways in Response to Bacterial Pore-Forming Toxins Promotes Cell Survival. Cell 126 (6) 1135-1145.
  • Kageyama-Yahara, Natsuko; Riezman, Howard (2006) Transmembrane topology of ceramide synthase in yeast. Biochem. J. 398 (3) 585-593.
  • van der Goot, F. Gisou; Gruenberg, Jean (2006) Intra-endosomal membrane traffic. Trends Cell Biol. 16 (10) 514-521.
  • Yoshida, Kunito; Soldati, Thierry (2006) Dissection of amoeboid movement into two mechanically distinct modes. J. Cell Sci. 119 (18) 3833-3844.
  • Gruenberg, Jean; van der Goot, F. Gisou (2006) Mechanisms of pathogen entry through the endosomal compartments. Nat. Rev. Mol. Cell Biol. 7 (7) 495-504.
  • Liu, Jian; Kaksonen, Marko; Drubin, David G.; Oster, George (2006) Endocytic vesicle scission by lipid phase boundary forces. Proc. Natl. Acad. Sci. USA 103 (27) 10277-10282.
  • Gachon, Frédéric; Olela, Fabienne Fleury; Schaad, Olivier; Descombes, Patrick; Schibler, Ueli (2006) The circadian PAR-domain basic leucine zipper transcription factors DBP, TEF, and HLF modulate basal and inducible xenobiotic detoxification. Cell Metab. 4 (1) 25-36.
  • Gotthardt, Daniel Dieckmann, Régis Blancheteau, Vincent Kistler, Claudia Reichardt, Frank Soldati, Thierry (2006) Preparation of Intact, Highly Purified Phagosomes from Dictyostelium. Dictyostelium discoideum Protocols Vol. 346 (Part IV)Ed. Eichinger, Ludwig Rivero, FranciscoMethods in Molecular Biology. Humana Press. (Totowa, NJ). 439-448.
  • Hagedorn, Monica Neuhaus, Eva M. Soldati, Thierry (2006) Optimized Fixation and Immunofluorescence Staining Methods for Dictyostelium Cells. Dictyostelium discoideum Protocols Vol. 346 (Part III)Ed. Eichinger, Ludwig Rivero, FranciscoMethods in Molecular Biology. Humana Press. (Totowa, NJ). 327-338.
  • Dudu, Veronica; Bittig, Thomas; Entchev, Eugeni; Kicheva, Anna; Jülicher, Frank; González-Gaitán, Marcos (2006) Erratum: Postsynaptic Mad Signaling at the Drosophila Neuromuscular Junction. Curr. Biol. 16 (12) 1256.
  • Blattes, Roxane; Monod, Caroline; Susbielle, Guillaume; Cuvier, Olivier; Wu, Jian-hong; Hsieh, Tao-shih; Laemmli, Ulrich K; Käs, Emmanuel (2006) Displacement of D1, HP1 and topoisomerase II from satellite heterochromatin by a specific polyamide. EMBO J. 25 (11) 2397-2408.
  • Riezman, Howard (2006) Organization and functions of sphingolipid biosynthesis in yeast. Biochem. Soc. Trans. 34 (3) 367-369.
  • Kaksonen, Marko; Toret, Christopher P.; Drubin, David G. (2006) Harnessing actin dynamics for clathrin-mediated endocytosis. Nat. Rev. Mol. Cell Biol. 7 (6) 404-414.
  • Roux, Aurélien; Uyhazi, Katherine; Frost, Adam; De Camilli, Pietro (2006) GTP-dependent twisting of dynamin implicates constriction and tension in membrane fission. Nature 441 (7092) 528-531.
  • Grosshans, Bianka L.; Grötsch, Helga; Mukhopadhyay, Debdyuti; Fernandez, Isabel M.; Pfannstiel, Jens; Idrissi, Fatima-Zahra; Lechner, Johannes; Riezman, Howard; Geli, M. Isabel (2006) TEDS Site Phosphorylation of the Yeast Myosins I Is Required for Ligand-induced but Not for Constitutive Endocytosis of the G Protein-coupled Receptor Ste2p. J. Biol. Chem. 281 (16) 11104-11114.
  • Gruenberg, Jean; van der Goot, F. Gisou (2006) Toxoplasma: Guess Who's Coming to Dinner. Cell 125 (2) 226-228.
  • Toshima, Junko Y.; Toshima, Jiro; Kaksonen, Marko; Martin, Adam C.; King, David S.; Drubin, David G. (2006) Spatial dynamics of receptor-mediated endocytic trafficking in budding yeast revealed by using fluorescent α-factor derivatives. Proc. Natl. Acad. Sci. USA 103 (15) 5793-5798.
  • Hermida, Leandro; Schaad, Olivier; Demougin, Philippe; Descombes, Patrick; Primig, Michael (2006) MIMAS: an innovative tool for network-based high density oligonucleotide microarray data management and annotation. BMC Bioinformatics 7 (1) 190.
  • Dudu, Veronica; Bittig, Thomas; Entchev, Eugeni; Kicheva, Anna; Jülicher, Frank; González-Gaitán, Marcos (2006) Postsynaptic Mad Signaling at the Drosophila Neuromuscular Junction. Curr. Biol. 16 (7) 625-635.
  • Mendoza, Luis; Xenarios, Ioannis (2006) A method for the generation of standardized qualitative dynamical systems of regulatory networks. Theor Biol Med Model 3 (1) 13.
  • Pellissier, François; Glogowski, Carolina M.; Heinemann, Stephen F.; Ballivet, Marc; Ossipow, Vincent (2006) Lab assembly of a low-cost, robust SYBR green buffer system for quantitative real-time polymerase chain reaction. Anal. Biochem. 350 (2) 310-312.
  • Schmid, Manfred; Arib, Ghislaine; Laemmli, Caroline; Nishikawa, Junichi; Durussel, Thérèse; Laemmli, Ulrich K. (2006) Nup-PI: The Nucleopore-Promoter Interaction of Genes in Yeast. Mol. Cell 21 (3) 379-391.
  • Iacovache, Ioan; Paumard, Patrick; Scheib, Holger; Lesieur, Claire; Sakai, Naomi; Matile, Stefan; Parker, Michael W.; van der Goot, F Gisou (2006) A Rivet Model for Channel Formation by Aerolysin-like Pore-Forming Toxins. EMBO J. 25 (3) 457-466.
  • Abrami, Laurence; Leppla, Stephen H.; van der Goot, F. Gisou (2006) Receptor palmitoylation and ubiquitination regulate anthrax toxin endocytosis. J. Cell Biol. 86 (2) 266-320.
  • Meier, Karsten D.; Deloche, Olivier; Kajiwara, Kentaro; Funato, Kouichi; Riezman, Howard (2006) Sphingoid Base Is Required for Translation Initiation during Heat Stress in Saccharomyces cerevisiae. Mol. Biol. Cell 17 (3) 1164-1175.

2005

  • Itoh, Toshiki; Erdmann, Kai S.; Roux, Aurelien; Habermann, Bianca; Werner, Hauke; De Camilli, Pietro (2005) Dynamin and the Actin Cytoskeleton Cooperatively Regulate Plasma Membrane Invagination by BAR and F-BAR Proteins. Dev. Cell 9 (6) 791-804.
  • Skowronska-Krawczyk, Dorato; Matter-Sadzinski, Lidia; Ballivet, Marc; Matter, Jean-Marc (2005) The Basic Domain of ATH5 Mediates Neuron-Specific Promoter Activity during Retina Development. Mol. Cell. Biol. 25 (22) 10029-10039.
  • Kaksonen, Marko; Toret, Christopher P.; Drubin, David G. (2005) A Modular Design for the Clathrin- and Actin-Mediated Endocytosis Machinery. Cell 123 (2) 305-320.
  • Maeshima, Kazuhiro; Eltsov, Michail; Laemmli, Ulrich K. (2005) Chromosome structure: improved immunolabeling for electron microscopy. Chromosoma 114 (5) 365-375.
  • Matter-Sadzinski, Lidia; Puzianowska-Kuznicka, Monika; Hernandez, Julio; Ballivet, Marc; Matter, Jean-Marc (2005) A bHLH transcriptional network regulating the specification of retinal ganglion cells. Development 132 (17) 3907-3921.
  • Drubin, David G. Kaksonen, Marko Toret, Christopher Sun, Yidi (2005) Cytoskeletal Networks and Pathways Involved in Endocytosis. Signalling Networks in Cell Shape and Motility 269Ed. Bock, Gregory Goode, JamieNovartis Foundation Symposium. John Wiley & Sons, Ltd. (Chichester, UK.). 35-46.
  • Le Blanc, Isabelle; Luyet, Pierre-Philippe; Pons, Véronique; Ferguson, Charles; Emans, Neil; Petiot, Anne; Mayran, Nathalie; Demaurex, Nicolas; Fauré, Julien; Sadoul, Rémy; Parton, Robert G.; Gruenberg, J. (2005) Endosome-to-cytosol transport of viral nucleocapsids. Nat. Cell Biol. 7 (7) 653-664.
  • Winkler, Sylke; Schwabedissen, Anja; Backasch, Dana; Bökel, Christian; Seidel, Claudia; Bönisch, Stefanie; Fürthauer, Maximilian; Kuhrs, Antje; Cobreros, Laura; Brand, Michael; González-Gaitán, Marcos (2005) Target-selected mutant screen by TILLING in Drosophila. Genome Res. 15 (5) 718-723.
  • Rabah, Ghada; Popescu, Razvan; Cox, Jos A.; Engelborghs, Yves; Craescu, Constantin T. (2005) Solution structure and internal dynamics of NSCP, a compact calcium-binding protein. FEBS J. 272 (8) 2022-2036.
  • Roux, Aurélien; Cuvelier, Damien; Nassoy, Pierre; Prost, Jacques; Bassereau, Patricia; Goud, Bruno (2005) Role of curvature and phase transition in lipid sorting and fission of membrane tubules. EMBO J. 24 (8) 1537-1545.
  • Martin, Adam C.; Xu, Xiao-Ping; Rouiller, Isabelle; Kaksonen, Marko; Sun, Yidi; Belmont, Lisa; Volkmann, Niels; Hanein, Dorit; Welch, Matthew; Drubin, David G. (2005) Effects of Arp2 and Arp3 nucleotide-binding pocket mutations on Arp2/3 complex function. J. Cell Biol. 168 (2) 315-328.
  • Bollenbach, T.; Kruse, K.; Pantazis, P.; González-Gaitán, Marcos; Jülicher, F. (2005) Robust Formation of Morphogen Gradients. Phys. Rev. Lett. 3 (1) 01813.
  • Cox, Jos A.; Tirone, Fabiana; Durussel, Isabelle; Firanescu, Claudia; Blouquit, Yves; Duchambon, Patricia; Craescu, Constantin T. (2005) Calcium and Magnesium Binding to Human Centrin 3 and Interaction with Target Peptides. Biochemistry 44 (3) 840-850.
  • Sun, Yidi; Kaksonen, Marko; Madden, David T.; Schekman, Randy; Drubin, David G. (2005) Interaction of Sla2p's ANTH Domain with PtdIns(4,5)P2 Is Important for Actin-dependent Endocytic Internalization. Mol. Biol. Cell 16 (2) 717-730.
  • Jolimaître, Pascale; Roux, Aurélien; Blanpain, Annick; Leduc, Cécile; Bassereau, Patricia; Bourel-Bonnet, Line (2005) Synthesis and preliminary physical applications of a rhodamin-biotin phosphatidylethanolamine, an easy attainable lipid double probe. Chem. Phys. Lipids 133 (2) 215-223.

2004

  • Leduc, Cécile; Campàs, Otger; Zeldovich, Konstantin B.; Roux, Aurélien; Jolimaitre, Pascale; Bourel-Bonnet, Line; Goud, Bruno; Joanny, Jean-François; Bassereau, Patricia; Prost, Jacques (2004) Cooperative extraction of membrane nanotubes by molecular motors. Proc. Natl. Acad. Sci. U. S. A. 101 (49) 17096-17101.
  • Williams, P. Huw; Hagemann, Anja; González-Gaitán, Marcos; Smith, James C. (2004) Erratum: Visualizing Long-Range Movement of the Morphogen Xnr2 in the Xenopus Embryo. Curr. Biol. 14 (24) 2312.
  • Williams, P. Huw; Hagemann, Anja; González-Gaitán, Marcos; Smith, James C. (2004) Visualizing Long-Range Movement of the Morphogen Xnr2 in the Xenopus Embryo. Curr. Biol. 14 (21) 1916-1923.
  • Allain, J.-M.; Storm, C.; Roux, Aurélien; Amar, M. Ben; Joanny, Jean-François (2004) Fission of a Multiphase Membrane Tube. Phys. Rev. Lett. 93 (15) 158104.
  • Schmid, Manfred; Durussel, Thérèse; Laemmli, Ulrich K. (2004) ChIC and ChEC: Genomic Mapping of Chromatin Proteins. Mol. Cell 16 (1) 147-157.
  • Kruse, Karsten (2004) Dpp gradient formation by dynamin-dependent endocytosis: receptor trafficking and the diffusion model. Development 131 (19) 4843-4856.
  • Skowronska-Krawczyk, Dorota; Ballivet, Marc; Dynlacht, Brian D.; Matter, Jean-Marc (2004) Highly specific interactions between bHLH transcription factors and chromatin during retina development. Development 131 (18) 4447-4454.
  • Ossipow, Vincent; Pellissier, François; Schaad, Olivier; Ballivet, Marc (2004) Gene expression analysis of the critical period in the visual cortex. Mol. Cell. Neurosci. 27 (1) 70-83.
  • Dudu, Veronica; Pantazis, Periklis; González-Gaitán, Marcos (2004) Membrane traffic during embryonic development: epithelial formation, cell fate decisions and differentiation. Curr. Opin. Cell Biol. 16 (4) 407-414.
  • Fauré, Julien; Stalder, Romaine; Borel, Christelle; Sobo, Komla; Piguet, Vincent; Demaurex, Nicolas; Gruenberg, Jean; Trono, Didier (2004) ARF1 Regulates Nef-Induced CD4 Degradation. Curr. Biol. 14 (12) 1056-1064.
  • Watanabe, Reika; Riezman, Howard (2004) Differential ER exit in yeast and mammalian cells. Curr. Opin. Cell Biol. 16 (4) 350-355.

2003

  • González-Gaitán, Marcos; Stenmark, Harald (2003) Endocytosis and Signaling. Cell 115 (5) 513-521.
  • Kaksonen, Marko; Sun, Yidi; Drubin, David G. (2003) A Pathway for Association of Receptors, Adaptors, and Actin during Endocytic Internalization. Cell 115 (4) 475-487.
  • González-Gaitán, Marcos (2003) Endocytic trafficking during Drosophila development. Mech. Dev. 120 (11) 1265-1282.
  • Nizak, Clément; Martin-Lluesma, Silvia; Moutel, Sandrine; Roux, Aurélien; Kreis, Thomas E.; Goud, Bruno; Perez, Franck (2003) Recombinant Antibodies Against Subcellular Fractions Used to Track Endogenous Golgi Protein Dynamics in Vivo. Traffic 4 (11) 739-753.
  • Schaerer-Brodbeck, Claudia; Riezman, Howard (2003) Genetic and biochemical interactions between the Arp2/3 complex, Cmd1p, casein kinase II, and Tub4p in yeast. FEMS Yeast Res. 4 (1) 37-49.
  • Sekiya-Kawasaki, Mariko; Groen, Aaron Chris; Cope, M. Jamie T. V.; Kaksonen, Marko; Watson, Hadiya A.; Zhang, Chao; Shokat, Kevan M.; Wendland, Beverly; McDonald, Kent L.; McCaffery, J. Michael; Drubin, David G. (2003) Dynamic phosphoregulation of the cortical actin cytoskeleton and endocytic machinery revealed by real-time chemical genetic analysis. J. Cell Biol. 162 (5) 765-772.
  • González-Gaitán, Marcos (2003) From disease to development to cell biology and back. Development 130 (21) 5053-5057.
  • Abaza, Aouatef; Soleilhac, Jean-Marc; Westendorf, Joanne; Piel, Matthieu; Crevel, Isabelle; Roux, Aurélien; Pirollet, Fabienne (2003) M Phase Phosphoprotein 1 Is a Human Plus-end-directed Kinesin-related Protein Required for Cytokinesis. J. Biol. Chem. 278 (30) 27844-27852.
  • Wucherpfennig, Tanja; Wilsch-Bräuninger, Michaela; González-Gaitán, Marcos (2003) Role of Drosophila Rab5 during endosomal trafficking at the synapse and evoked neurotransmitter release. J. Cell Biol. 161 (3) 609-624.
  • Maeshima, Kazuhiro; Laemmli, Ulrich K. (2003) A Two-Step Scaffolding Model for Mitotic Chromosome Assembly. Dev. Cell 4 (4) 467-480.
  • González-Gaitán, Marcos (2003) Signal dispersal and transduction through the endocytic pathway. Nat. Rev. Mol. Cell Biol. 98 (3) 3197-224.
  • Grassi, Francesca; Palma, Eleonora; Tonini, Raffaella; Amici, Mascia; Ballivet, Marc; Eusebi, Fabrizio (2003) Amyloid β1–42 peptide alters the gating of human and mouse α-bungarotoxin-sensitive nicotinic receptors. J. Physiol. 547 (1) 147-157.
  • Ishii, Kojiro; Laemmli, Ulrich K. (2003) Structural and Dynamic Functions Establish Chromatin Domains. Mol. Cell 11 (1) 237-248.

2002

  • Edelstein, Stuart J. (2002) John Edsall and ligand-linked subunit interactions in hemoglobin. Biophys. Chem. 100 (1-3) 117-121.
  • Begbie, Jo; Balivet, Marc; Graham, Anthony (2002) Early Steps in the Production of Sensory Neurons by the Neurogenic Placodes. Mol. Cell. Neurosci. 21 (3) 502-511.
  • Kaksonen, Marko; Pavlov, Ivan; Võikar, Vootele; Lauri, Sari E.; Hienola, Anni; Riekki, Ruusu; Lakso, Merja; Taira, Tomi; Rauvala, Heikki (2002) Syndecan-3-Deficient Mice Exhibit Enhanced LTP and Impaired Hippocampus-Dependent Memory. Mol. Cell. Neurosci. 21 (1) 158-172.
  • Berdnik, Daniela; Török, Tibor; González-Gaitán, Marcos; Knoblich, Juergen A. (2002) The Endocytic Protein α-Adaptin Is Required for Numb-Mediated Asymmetric Cell Division in Drosophila. Developmental Cell 3 (2) 221-231.
  • Pavlov, Ivan; Võikar, Vootele; Kaksonen, Marko; Lauri, Sari E.; Hienola, Anni; Taira, Tomi; Rauvala, Heikki (2002) Role of Heparin-Binding Growth-Associated Molecule (HB-GAM) in Hippocampal LTP and Spatial Learning Revealed by Studies on Overexpressing and Knockout Mice. Mol. Cell. Neurosci. 20 (2) 330-342.
  • Roux, Aurélien; Cappello, Giovanni; Cartaud, Jean; Prost, Jacques; Goud, Bruno; Bassereau, Patricia (2002) A minimal system allowing tubulation with molecular motors pulling on giant liposomes. Proc. Natl. Acad. Sci. U. S. A. 99 (8) 5394-5399.
  • Guichet, Antoine; Wucherpfennig, Tanja; Dudu, Veronica; Etter, Sylvain; Wilsch‐Bräuniger, Michaela; Hellwig, Andrea; González‐Gaitán, Marcos; Huttner, Wieland B.; Schmidt, Anne A. (2002) Essential role of endophilin A in synaptic vesicle budding at the Drosophila neuromuscular junction. EMBO J. 21 (7) 1661-1672.
  • Entchev, Eugeni V.; González-Gaitán, Marcos A. (2002) Morphogen Gradient Formation and Vesicular Trafficking. Traffic 3 (2) 98-109.

2001

  • Klezovitch, Olga; Brandenburger, Yves; Geindre, Michèle; Deshusses, Jacques (2001) Characterization of reactions catalysed by yeast phosphatidylinositol synthase. FEBS Lett. 320 (3) 256-260.
  • Reizes, Ofer; Lincecum, John; Wang, Zihua; Goldberger, Olga; Huang, Li; Kaksonen, Marko; Ahima, Rexford; Hinkes, Michael T.; Barsh, Gregory S.; Rauvala, Heikki; Bernfield, Merton (2001) Transgenic Expression of Syndecan-1 Uncovers a Physiological Control of Feeding Behavior by Syndecan-3. Cell 106 (1) 105-116.
  • Maeshima, Kazuhiro; Janssen, Samuel; Laemmli, Ulrich K. (2001) Specific targeting of insect and vertebrate telomeres with pyrrole and imidazole polyamides. EMBO J. 20 (12) 3218-3228.
  • Cavalli, Valeria; Corti, Michela; Gruenberg, Jean (2001) Endocytosis and signaling cascades: a close encounter. FEBS Lett. 498 (2-3) 190-196.
  • Matter-Sadzinski, Lidia; Matter, Jean-Marc; Ong, Ming-Thong; Hernandez, Julio; Ballivet, Marc (2001) Specification of neurotransmitter receptor identity in developing retina: the chick ATH5 promoter integrates the positive and negative effects of several bHLH proteins. Development 128 (2) 217-231.

2000

1999

  • Yoshida, Tatsushi; Kokura, Kenji; Makino, Yasutaka; Ossipow, Vincent; Tamura, Taka-aki (1999) Heterogeneous nuclear RNA-ribonucleoprotein F binds to DNA via an oligo(dG)-motif and is associated with RNA polymerase II. Genes Cells 4 (12) 707-719.
  • van der Goot, F. Gisou; Pugin, Jérôme; Hribar, Marusa; Fransen, Lucie; Dunant, Yves; De Baetselier, Patrick; Bloc, Alain; Lucas, Rudolf (1999) Membrane interaction of TNF is not sufficient to trigger increase in membrane conductance in mammalian cells. FEBS Lett. 460 (1) 107-111.
  • Hribar, Marusa; Bloc, Alain; Van der Goot, F. Gisou; Fransen, Lucie; De Baetselier, Patrick; Grau, Georges E.; Bluethmann, Horst; Matthay, Michael A.; Dunant, Yves; Pugin, Jérôme; Lucas, Rudolf (1999) The lectin-like domain of tumor necrosis factor-α increases membrane conductance in microvascular endothelial cells and peritoneal macrophages. Eur. J. Immunol. 29 (10) 3105-3111.
  • González-Gaitán, Marcos; Jäckle, Herbert (1999) The range of spalt-activating Dpp signalling is reduced in endocytosis-defective Drosophila wing discs. Mech. Dev. 87 (1-2) 143-151.
  • Palma, Eleonora; Maggi, Laura; Barabino, Benedetta; Eusebi, Fabrizio; Ballivet, Marco (1999) Nicotinic Acetylcholine Receptors Assembled from the α7 and β3 Subunits. J. Biol. Chem. 274 (26) 18335-18340.
  • Vécsey-Semjén, Beatrix; Knapp, Stefan; Möllby, Roland; van der Goot, F. Gisou (1999) The Staphylococcal α-Toxin Pore Has a Flexible Conformation. Biochemistry 38 (14) 4296-4302.
  • Ossipow, Vincent; Fonjallaz, Philippe; Schibler, Ueli (1999) An RNA Polymerase II Complex Containing All Essential Initiation Factors Binds to the Activation Domain of PAR Leucine Zipper Transcription Factor Thyroid Embryonic Factor. Mol. Cell. Biol. 19 (2) 1242-1250.
  • Kinnunen, Anu; Niemi, Maria; Kinnunen, Tarja; Kaksonen, Marko; Nolo, Riitta; Rauvala, Heikki (1999) Heparan sulphate and HB-GAM (heparin-binding rowth-associated molecule) in the development of the thalamocortical pathway of rat brain. Eur. J. Neurosci. 11 (2) 491-502.
  • Sandaltzopoulos, Raphael Ossipow, Vincent Gdula, David A. Tsukiyama, Toshio Wu, Carl (1999) Purification of Drosophila nucleosome remodeling factor. Chromatin Volume 304Methods in Enzymology. 757-765.

1998

  • Pizarro-Cerdá, Javier; Parton, Robert G.; van der Goot, Gisou; Sola-Landa, Alberto; Lopez-Goñi, Ignacio; Moreno, Edgardo; Gorvel, Jean-Pierre (1998) Brucella abortus Transits through the Autophagic Pathway and Replicates in the Endoplasmic Reticulum of Nonprofessional Phagocytes. Infect. Immun. 66 (12) 5711-5724.
  • Imai, Shinji; Kaksonen, Marko; Raulo, Erkki; Kinnunen, Tarja; Fages, Carole; Meng, Xiaojuan; Lakso, Merja; Rauvala, Heikki (1998) Osteoblast Recruitment and Bone Formation Enhanced by Cell Matrix-associated Heparin-binding Growth-associated Molecule (HB-GAM). J. Cell Biol. 143 (4) 1113-1128.
  • Fages, Carole; Kaksonen, Marko; Kinnunen, Tarja; Punnonen, Eeva-Liisa; Rauvala, Heikki (1998) Regulation of mRNA localization by transmembrane signalling: local interaction of HB-GAM (heparin-binding growth-associated molecule) with the cell surface localizes beta-actin mRNA. J. Cell Sci. 111 (20) 3073-3080.
  • Gdula, David A.; Sandaltzopoulos, Raphael; Tsukiyama, Toshio; Ossipow, Vincent; Wu, Carl (1998) Inorganic pyrophosphatase is a component of the Drosophila nucleosome remodeling factor complex. Genes Dev. 12 (20) 3206-3216.
  • Krause, Karl-Heinz; Fivaz, Marc; Monod, Antoinette; van der Goot, F. Gisou (1998) Aerolysin Induces G-protein Activation and Ca2+Release from Intracellular Stores in Human Granulocytes. J. Biol. Chem. 273 (29) 18122-18129.
  • Roztocil, Tomas; Matter-Sadzinski, Lidia; Gomez, Marie; Ballivet, Marc; Matter, Jean-Marc (1998) Functional Properties of the Neuronal Nicotinic Acetylcholine Receptor β3 Promoter in the Developing Central Nervous System. J. Biol. Chem. 15 (24) 5727-15137.
  • Matter, Jean-Marc; Matter-Sadzinski, Lidia; Roztocil, Tomas; Hernandez, Marie-Clemencia; Couturier, Sabine; Ong, Ming-Thong; Ballivet, Marc (1998) On the transcriptional regulation of neuronal nAChR genes. J. Physiol. 92 (3-4) 245-248.
  • Kinnunen, Tarja; Kaksonen, Marko; Saarinen, Juhani; Kalkkinen, Nisse; Peng, H. Benjamin; Rauvala, H. Benjamin (1998) Cortactin-Src Kinase Signaling Pathway Is Involved in N-syndecan-dependent Neurite Outgrowth. J. Biol. Chem. 273 (17) 10702-10708.
  • Rossjohn, Jamie; Feil, Susanne C.; McKinstry, William J.; Tsernoglou, Demetrius; Van Der Goot, Gisou; Buckley, J.Thomas; Parker, Michael W. (1998) Aerolysin—A Paradigm for Membrane Insertion of Beta-Sheet Protein Toxins?. J. Struct. Biol. 121 (2) 92-100.
  • Kinnunen, Anu; Kinnunen, Tarja; Kaksonen, Marko; Nolo, Riitta; Panula, Pertti; Rauvala, Heikki (1998) N-Syndecan and HB-GAM (Heparin-Binding Growth-Associated Molecule) associate with early axonal tracts in the rat brain. Eur. J. Neurosci. 10 (2) 635-648.
  • Rossjohn, Jamie; Raja, Srikumar M.; Nelson, Kim L.; Feil, Susanne C.; van der Goot, F. Gisou; Parker, Michael W.; Buckley, J. Thomas (1998) Movement of a Loop in Domain 3 of Aerolysin Is Required for Channel Formation. Biochemistry 37 (2) 741-746.
  • Wu, C.; Tsukiyama, T.; Gdula, D.; Georgel, P.; Martinez-Balbas, M.; Mizuguchi, G.; Ossipow, V.; Sandaltzopoulos, R.; Wang, H.-M. (1998) ATP-dependent Remodeling of Chromatin. Cold Spring Harbor Symp. Quant. Biol. 89 357-534.
  • Fucile, Sergio; Matter, Jean-Marc; Erkman, Linda; Ragozzino, Davide; Barabino, Benedetta; Grassi, Francesca; Alemà, Stefano; Ballivet, Marc; Eusebi, Fabrizio (1998) The neuronal α6 subunit forms functional heteromeric acetylcholine receptors in human transfected cells. Eur. J. Neurosci. 10 (1) 172-178.

1997

  • Cabiaux, Véronique; Buckley, J. Thomas; Wattiez, Ruddy; Ruysschaert, Jean-Marie; Parker, Michael W.; van der Goot, F. Gisou (1997) Conformational Changes in Aerolysin during the Transition from the Water-Soluble Protoxin to the Membrane Channel. Biochemistry 36 (49) 15224-15232.
  • Edelstein, Stuart J.; Schaad, Olivier; Changeux, Jean-Pierre (1997) Single Binding Versus Single Channel Recordings:  A New Approach to Study Ionotropic Receptors. Biochemistry 36 (45) 13755-13760.
  • Roztocil, Tomas; Matter-Sadzinski, Lidia; Alliod, Christine; Matter, Jean-Marc; Ong, Ming-Thong; Hernandez, Julio; Ballivet, Marc (1997) NeuroM, a neural helix-loop-helix transcription factor, defines a new transition stage in neurogenesis. Development 124 (17) 3263-3272.
  • Fucile, S.; Barabino, B.; Palma, E.; Grassi, F.; Limatola, C.; Mileo, A. M.; Alemà, S.; Ballivet, Marc; Eusebi, Fabrizio (1997) α5 Subunit forms functional α3β4α5 nAChRs in transfected human cells. NeuroReport 8 (11) 2433-2436.
  • Pearl Forjanic, Julia; Chen, Chao-Kung; Jäckle, Herbert; González-Gaitán, Marcos (1997) Genetic Analysis of Stomatogastric Nervous System Development in Drosophila Using Enhancer Trap Lines. Dev. Biol. 186 139-154.
  • González-Gaitán, Marcos; Jäckle, Herbert (1997) Role of Drosophila α-Adaptin in Presynaptic Vesicle Recycling. Cell 88 (6) 767-776.
  • Charbonnière, Loïc J.; Williams, Alan F.; Frey, Urban; Merbach, André E.; Kamalaprija, Philippe; Schaad, Olivier (1997) A Comparison of the Lability of Mononuclear Octahedral and Dinuclear Triple-Helical Complexes of Cobalt(II). J. Am. Chem. Soc. 119 (10) 2488-2496.
  • Ragozzino, Davide; Fucile, Sergio; Giovannelli, Aldo; Grassi, Francesca; Mileo, Anna Maria; Ballivet, Marc; Alemà, Stefano; Eusebi, Fabrizio (1997) Functional Properties of Neuronal Nicotinic Acetylcholine Receptor Channels Expressed in Transfected Human Cells. Eur. J. Neurosci. 9 (3) 480-488.
  • Fraser-L\'Hostis, Chantal; Defrise-Quertain, Fabienne; Coral, Danièle; Deshusses, Jacques (1997) Regulation of the Intracellular pH in the Protozoen Parasite Trypanosoma brucei brucei. Biol. Chem. 378 (9) 1039-1046.

1996

  • Edelstein, Stuart J.; Schaad, Olivier; Henry, Eric; Bertrand, Daniel; Changeux, Jean-Pierre (1996) A kinetic mechanism for nicotinic acetylcholine receptors based on multiple allosteric transitions. Biol. Cybern. 75 (5) 361-379.
  • Edelstein, Stuart J.; Changeux, J. -P. (1996) Allosteric proteins after thirty years: The binding and state functions of the neuronalα7 nicotinic acetylcholine receptors. Experientia 52 (12) 1083-1090.
  • Nolo, Riitta; Kaksonen, Marko; Rauvala, Heikki (1996) Developmentally Regulated Neurite Outgrowth Response from Dorsal Root Ganglion Neurons to Heparin-binding Growth-associated Molecule (HB-GAM) and the Expression of HB-GAM in the Targets of the Developing Dorsal Root Ganglion Neurites. Eur. J. Neurosci. 8 (8) 1658-1665.
  • Piguet, Claude; Bünzli, Jean-Claude G.; Bernardinelli, Gérald; Hopfgartner, Gérard; Petoud, Stéphane; Schaad, Olivier (1996) Lanthanide Podates with Predetermined Structural and Photophysical Properties:  Strongly Luminescent Self-Assembled Heterodinuclear d−f Complexes with a Segmental Ligand Containing Heterocyclic Imines and Carboxamide Binding Units. J. Am. Chem. Soc. 118 (28) 6681-6697.
  • Ballivet, Marc; Alliod, Christine; Bertrand, Sonia; Bertrand, Daniel (1996) Nicotinic Acetylcholine Receptors in the Nematode Caenorhabditis elegans. J. Mol. Biol. 258 (2) 261-269.
  • Fonjallaz, Philippe; Ossipow, Vincent; Wanner, Gerhard; Schibler, Ueli (1996) The two PAR leucine zipper proteins, TEF and DBP, display similar circadian and tissue-specific expression, but have different target promoter preferences. EMBO J. 15 (2) 351-362.

1995

  • Ossipow, Vincent; Tassan, Jean-Pierre; Nigg, Erich A.; Schibler, Ueli (1995) A mammalian RNA polymerase II holoenzyme containing all components required for promoter-specific transcription initiation. Cell 83 (1) 137-146.
  • Matter, Jean-Marc; Matter-Sadzinski, Lidia; Ballivet, Marc (1995) Activity of the β3 nicotinic receptor promoter is a marker of neuron fate determination during retina development. J. Neurosci. 15 (9) 5919-5928.
  • Schmidt-Ott, Urs; González-Gaitán, Marcos; Technau, Gerhard M. (1995) Analysis of neural elements in head-mutant Drosophila embryos suggests segmental origin of the optic lobes. Roux\'s Arch. Dev. Biol. 205 (1-2) 31-44.
  • Nolo, Riitta; Kaksonen, Marko; Raulo, Erkki; Rauvala, Heikki (1995) Co-expression of heparin-binding growth-associated molecule (HB-GAM) and N-syndecan (syndecan-3) in developing rat brain. Neurosci. Lett. 191 (1-2) 39-42.
  • González-Gaitán, Marcos; Jäckle, Herbert (1995) Invagination centers within the Drosophila stomatogastric nervous system anlage are positioned by Notch-mediated signaling which is spatially controlled through wingless. Development 121 (8) 2313-2325.
  • Hernandez, Maria-Clemencia; Erkman, Linda; Matter-Sadzinski, Lidia; Roztocil, Tomas; Ballivet, Marc; Matter, Jean-Marc (1995) Characterization of the Nicotinic Acetylcholine Receptor β3 Gene. Its regulation within the avian nervous system is effected by a promoter 143 base pairs in length.. J. Biol. Chem. 4 (7) 121-3233.

1994

  • Piguet, Claude; Hopfgartner, Gérard; Bocquet, Bernard; Schaad, Olivier; Williams, Alan F. (1994) Self-Assembly of Heteronuclear Supramolecular Helical Complexes with Segmental Ligands. J. Am. Chem. Soc. 116 (20) 9092-9102.
  • Hussy, N.; Ballivet, M.; Bertrand, D. (1994) Agonist and antagonist effects of nicotine on chick neuronal nicotinic receptors are defined by alpha and beta subunits. J. Neurophysiol. 72 (3) 1317-1326.
  • González-Gaitán, Marcos; Rothe, M.; Wimmer, E. A.; Taubert, H.; Jackle, H. (1994) Redundant functions of the genes knirps and knirps-related for the establishment of anterior Drosophila head structures.. Proc. Natl. Acad. Sci. USA 91 (18) 8567-8571.
  • Schmidt-Ott, U.; Gonzalez-Gaitan, Marcos; Jackle, H.; Technau, G. M. (1994) Number, identity, and sequence of the Drosophila head segments as revealed by neural elements and their deletion patterns in mutants. Proc. Natl. Acad. Sci. USA 91 (18) 8363-8367.
  • Gotti, C.; Hanke, W.; Maury, K.; Moretti, M.; Ballivet, Marc; Clementi, F.; Bertrand, D. (1994) Pharmacology and Biophysical Properties of α7 and α7 - α8 α-Bungarotoxin Receptor Subtypes Immunopurified from the Chick Optic Lobe. Eur. J. Neurosci. 6 (8) 1281-1291.
  • Rothe, Mike; Wimmer, Ernst A.; Pankratz, Michael J.; González-Gaitán, Marcos; Jäckle, Herbert (1994) Identical transacting factor requirement for knirps and knirps-related gene expression in the anterior but not in the posterior region of the Drosophila embryo. Mech. Dev. 46 (3) 169-181.
  • González-Gaitán, Marcos; Capdevila, María Paz; García-Bellido, Antonio (1994) Cell proliferation patterns in the wing imaginal disc of Drosophila. Mech. Dev. 46 (3) 183-200.
  • Bertrand, Daniel; Ballivet, Marc; Gomez, Marie; Bertrand, Sonia; Phannavong, B.; Gundelfinger, E. D. (1994) Physiological Properties of Neuronal Nicotinic Receptors Reconstituted from the Vertebrate β2 Subunit and Drosophila α Subunits. Eur. J. Neurosci. 6 (5) 869-875.
  • Kühnlein, Ronald P.; Frommer, Götz; Friedrich, Markus; González-Gaitán, Marcos; Weber, Alexander; Wagner-Bernholz, Juliane F.; Gehring, Walter J.; Jäckle, Herbert; Schuh, Reinhard (1994) spalt encodes an evolutionarily conserved zinc finger protein of novel structure which provides homeotic gene function in the head and tail region of the Drosophila embryo. EMBO J. 13 (1) 168-179.

1993

  • Ossipow, Vincent; Laemmlii, Ulrich K.; Schibler, Ueli (1993) A simple method to renature DNA-binding proteins separated by SDS-polyacrylamide gel electrophoresis. Nucl. Acids Res. 21 (25) 6040-6041.
  • Couso, Juan Pablo; González-Gaitán, Marcos (1993) Embryonic limb development in Drosophila. Trends Genet. 9 (11) 371-373.
  • Ossipow, Vincent; Descombes, Patrick; Schibler, Ueli (1993) CCAAT/enhancer-binding protein mRNA is translated into multiple proteins with different transcription activation potentials.. Proc. Natl. Acad. Sci. USA 90 (17) 8219-8223.
  • Steele-Mortimer, Olivia; Gruenberg, Jean; Clague, Michael J. (1993) Phosphorylation of GDI and membrane cycling of rab proteins. FEBS Lett. 329 (3) 313-318.

1992

  • Matter-Sadzinski, Lidia; Hernandez, Maria Clemencia; Roztocil, Tomas; Matter, Jean-Marc; Ballivet, Marc (1992) Neuronal specificity of the α7 nicotinic acetylcholine receptor promoter develops during morphogenesis of the central nervous system. EMBO J. 11 (12) 4529-4538.
  • Bellocq, Christine; Andrey-Tornare, Isabelle; Deret, Anne-Marie PAUNIER; Maeder, Bernard; Paturle, Lawrence; Job, Didier; Haiech, Jacques; Edelstein, Stuart J. (1992) Purification of assembly-competent tubulin from Saccharomyces cerevisiae. Eur. J. Biochem. 210 (1) 343-349.
  • Bertrand, Daniel; Bertrand, Sonia; Ballivet, Marc (1992) Pharmacological properties of the homomeric α7 receptor. Neurosci. Lett. 146 (1) 87-90.
  • Valera, S.; Ballivet, Marc; Bertrand, D. (1992) Progesterone modulates a neuronal nicotinic acetylcholine receptor.. Proc. Natl. Acad. Sci. USA 89 (20) 9949-9953.
  • Matter-Sadzinski, Lidia; Hernandez, Maria Clemencia; Roztocil, Tomas; Matter, Jean-Marc; Ballivet, Marc (1992) Neuronal specificity of the α7 nicotinic acetylcholine receptor promoter develops during morphogenesis of the central nervous system. EMBO J. 11 (12) 4529-4539.
  • Craescu, Constantin T.; Schaad, Olivier; Garel, Marie-Claude; Rosa, R.; Edelstein, Stuart (1992) Structural modeling of the human erythrocyte bisphosphoglycerate mutase. Biochimie 74 (6) 519-526.
  • Bertrand, D.; Devillers-Thiéry, A.; Revah, F.; Galzi, J. L.; Hussy, N.; Mulle, C.; Bertrand, S.; Ballivet, Marc; Changeux, J. P. (1992) Unconventional pharmacology of a neuronal nicotinic receptor mutated in the channel domain. Proc. Natl. Acad. Sci. USA 89 (4) 1261-1265.
  • Wuarin, Jérôme; Falvey, Eileen; Lavery, Dan; Talbot, Dale; Schmidt, Ed; Ossipow, Vincent; Fonjallaz, Philippe; Schibler, Ueli (1992) The role of the transcriptional activator protein DBP in circadian liver gene expression. J. Cell Sci., Suppl. 1992 123-127.

1991

  • Gross, Adrian; Ballivet, Marc; Rungger, Duri; Bertrand, Daniel (1991) Neuronal nicotinic acetylcholine receptors expressed in Xenopus oocytes: role of the α subunit in agonist sensitivity and desensitization. Pflügers Arch. 419 (5) 545-551.
  • Revah, F.; Bertrand, D.; Galzi, J.-L; Devillers-Thiéry, A.; Mulle, C.; Hussy, N.; Bertrand, S.; Ballivet, Marc; Changeux, J.-P. (1991) Mutations in the channel domain alter desensitization of a neuronal nicotinic receptor. Nature 353 846-849.
  • Bertrand, Daniel; Valera, Soledad; Bertrand, Sonia; Ballivet, Marc; Rungger, Duri (1991) Steroids inhibit nicotinic acetylcholine receptors. NeuroReport 2 (5) 277-280.
  • Cooper, Ellis; Couturier, Sabine; Ballivet, Marc (1991) Pentameric structure and subunit stoichiometry of a neuronal nicotinic acetylcholine receptor. Nature 350 235-238.

1990

  • Couturier, Sabine; Bertrand, Daniel; Matter, Jean-Marc; Hernandez, Maria-Clemencia; Bertrand, Sonia; Millar, Neil; Valera, Soledad; Barkas, Thomas; Ballivet, Marc (1990) A neuronal nicotinic acetylcholine receptor subunit (α7) is developmentally regulated and forms a homo-oligomeric channel blocked by α-BTX. Neuron 5 (6) 847-856.
  • Couturier, Sabine; Erkman, Linda; Valera, Soledad; Rungger, Duri; Bertrand, Sonia; Boulter, Jim; Ballivet, Marc; Bertrand, Daniel (1990) α5, α3, and non-​α3.  Three clustered avian genes encoding neuronal nicotinic acetylcholine receptor-​related subunits. J. Chem. Biol. 265 (29) 17560-17567.
  • González-Gaitán, Marcos A.; Micol, José-Luis; García-Bellido, Antonio (1990) Developmental Genetic Analysis of Contrabithorax Mutations in Drosophila Melanogaster. Genetics 126 (1) 139-155.
  • Matter, Jean-Marc; Matter-Sadzinski, Lidia; Ballivet, Marc (1990) Expression of neuronal nicotinic acetylcholine receptor genes in the developing chick visual system. EMBO J. 9 (4) 1021-1026.
  • Boulter, Jim; O\'Shea-Greenfield, Anne; Duvoisin, Robert M.; Connolly, John G.; Wada, Etsuko; Jensen, Abbie; Gardner, Paul D.; Ballivet, Marc; Deneris, Evan S.; McKinnon, David; Heinmann, Steve; Patrick, Jim (1990) α3, α5, and β4: three members of the rat neuronal nicotinic acetylcholine receptor-related gene family form a gene cluster. J. Biol. Chem. 265 (8) 4472-4482.
  • Bertrand, D.; Ballivet, Marc; Rungger, D. (1990) Activation and blocking of neuronal nicotinic acetylcholine receptor reconstituted in Xenopus oocytes. Proc. Natl. Acad. Sci. USA 87 (5) 1993-1997.

1989

  • Melms, A.; Chrestel, S.; Schalke, B. C. G.; Wekerle, H.; Mauron, A.; Ballivet, Marc; Barkas, T. (1989) Autoimmune T lymphocytes in myasthenia gravis. Determination of target epitopes using T lines and recombinant products of the mouse nicotinic acetylcholine receptor gene.. J. Clin. Invest. 83 (3) 785-790.

1988

  • Ballivet, Marc; Nef, P.; Couturier, S.; Rungger, D.; Bader, C. R.; Bertrand, D.; Cooper, E. (1988) Electrophysiology of a chick neuronal nicotinic acetylcholine receptor expressed in xenopus oocytes after cDNA injection. Neuron 1 (9) 847-852.
  • Weber, Jacques; Flükiger, Peter; Morgantini, Pierre-Yves; Schaad, Olivier; Goursot, Annick; Daul, Claude (1988) The modeling of nucleophilic and electrophilic additions to organometallic complexes using molecular graphics techniques. J. Comput. Aid. Mol. Des. 2 (3) 235-253.
  • Wang, Yan; Xu, Hao-Peng; Wang, Xin-Min; Ballivet, Marc; Schmidt, Jakob (1988) A cell type-specific enhancer drives expression of the chick muscle acetylcholine receptor α-subunit gene. Neuron 1 (6) 527-534.
  • Boyd, R. Thomas; Jacob, Michele H.; Couturier, Sabine; Ballivet, Marc; Berg, Darwin K. (1988) Expression and regulation of neuronal acetylcholine receptor mRNA in chick ciliary ganglia. Neuron 1 (6) 495-502.
  • Barkas, Thomas; Gabriel, Jean-Marc; Mauron, Alex; Hughes, Graham J.; Roth, Beatrice; Alliod, Christine; Tzartos, Socrates J.; Ballivet, Marc (1988) Monoclonal antibodies to the main immunogenic region of the nicotinic acetylcholine receptor bind to residues 61-76 of the alpha subunit. J. Biol. Chem. 263 (12) 5916-5920.
  • Wada, Keiji; Ballivet, Marc; Boulter, Jim; Connolly, John; Wada, Etsuko; Deneris, Evan S.; Swanson, Larry W.; Heinemann, Steve; Patrick, Jim (1988) Functional expression of a new pharmacological subtype of brain nicotinic acetylcholine receptor. Science 240 (4850) 330-334.
  • Bossy, Blaise; Ballivet, Marc; Spierer, Pierre (1988) Conservation of neural nicotinic acetylcholine receptors from Drosophila to vertebrate central nervous systems. EMBO J. 7 (3) 611-618.
  • Nef, Patrick; Oneyser, Carole; Alliod, Christine; Couturier, Sabine; Ballivet, Marc (1988) Genes expressed in the brain define three distinct neuronal nicotinic acetylcholine receptors. EMBO J. 7 (3) 595-601.
  • Shieh, B. H.; Ballivet, Marc; Schmidt, J. (1988) Acetylcholine receptor synthesis rate and levels of receptor subunit messenger RNAs in chick muscle. Neurosci. 24 (1) 175-187.
  • Barkas, T.; Mauron, A.; Roth, B.; Ballivet, Marc (1988) Molecular dissection of the nicotinic acetylcholine receptor. Monogr. Allergy 25 12-19.

1987

  • Shieh, B. H.; Ballivet, Marc; Schmidt, J. (1987) Quantitation of an alpha subunit splicing intermediate: evidence for transcriptional activation in the control of acetylcholine receptor expression in denervated chick skeletal muscle. J. Cell Biol. 104 (5) 1337-1341.
  • Barkas, T.; Mauron, A.; Roth, B.; Alliod, C.; Tzartos, S. J.; Ballivet, M. (1987) Mapping the main immunogenic region and toxin-binding site of the nicotinic acetylcholine receptor. Science 235 (4784) 77-80.

1986

  • Mirkovitch, Jovan; Spierer, Pierre; Laemmli, Ulrich K. (1986) Genes and loops in 320,000 base-pairs of the Drosophila melanogaster chromosome. J. Mol. Biol. 190 (2) 255-258.
  • Heinemann, Steve Boulter, Jim Connolly, John Goldman, Dan Evans, Karen Treco, Doug Ballivet, Marc Patrick, Jim (1986) Molecular biology of muscle and neural acetylcholine receptors. Nicotinic Acetylcholine Receptor Vol. 3Ed. Maelicke, AlfredNato ASI Subseries H:. Springer. (Berlin, Heidelberg). 359-387.
  • Nef, Patrick Oneyser, C. Barkas, T. Ballivet, Marc (1986) Acetylcholine receptor related genes expressed in the nervous system. Nicotinic Acetylcholine Receptor Vol. 3Ed. Maelicke, AlfredNato ASI Subseries H:. Springer. (Berlin, Heidelberg). 417-422.
  • (1986) Expression cloning and fusion proteins as tools to study receptor structure. Nicotinic Acetylcholine Receptor Vol. 3Ed. Maelicke, AlfredNato ASI Subseries H:. Springer. (Berlin, Heidelberg). 423-429.

1985

  • Boulter, Jim; Luyten, Walter; Evans, Karen; Mason, Pam; Ballivet, Marc; Goldman, Dan; Stengelin, Siegfried; Martin, Gary; Heinemann, Steve; Patrick, Jim (1985) Isolation of a clone coding for the alpha-subunit of a mouse acetylcholine receptor. J. Neurosci. 5 (9) 2545-2552.
  • Barkas, T. Gabriel, J.-M. Juillerat, M. Ballivet, Marc Tzartos, S. J. (1985) Myasthenia Gravis: State of the Art and Approaches to Immunotherapy. Neurobiochemistry Volume 36Ed. Hamprecht, B. Neuhoff, V.Colloquium der Gesellschaft für Biologische Chemie in Mosbach Baden. Springer. (Berlin/Heidelberg). 134-148.

1984

  • Nef, P.; Mauron, A.; Stalder, R.; Alliod, C.; Ballivet, Marc (1984) Structure linkage, and sequence of the two genes encoding the δ and γ subunits of the nicotinic acetylcholine receptor. Proc. Natl. Acad. Sci. USA 81 (24) 7975-7979.

1983

1982

1980

  • Georgopoulos, C. P.; Swindle, J.; Keppel, F.; Ballivet, Marc; Bisig, R.; Eisen, Harvey (1980) Studies on the E. coli groNB (nusB) gene which affects bacteriophage λ N gene function. Mol. Gen. Genet. 179 (1) 55-61.
  • Poteete, Anthony R.; Ptashne, Mark; Ballivet, Marc; Eisen, Harvey (1980) Operator sequences of bacteriophages P22 and 21. J. Mol. Biol. 137 (1) 81-91.

1978

1977