Ongoing

NEGESEQ

NExt-GEneration SEQuencing management

We just started a collaboration with the IGE3 Genomics platform to develop a new web application for the submission, validation, management, sequencing and processing of genomic data.

Partner web site: https://ige3.genomics.unige.ch/

LITEREV

LITErature REViews

Collaboration with the Institute of Global Health (ISG) to perform parallel hyperparameter optimization and automatically submit jobs on university's clusters.

Collaboration started: May 2023

Contact: aziza.merzouki@unige.ch

GREENCAP

RedCap replacement for long-term storage of tests and vaccines data

Collaboration with the State of Geneva (Service de la Médecin Cantonale), the Geneva Hospital and HEPIA. Software developement and operational support for the acquisition and management of COVID-19 tests and vaccines.

Collaboration started: July 2022

Contact: adriana.uribe@hcuge.ch, Simon Regard (SMC), orestis.malaspinas@hesge.ch

IGE3 Genomics Platform Data Software

Maintenance of two application used for sequences and scheduling management

SciCoS teams maintains and extends the application currently use to manage, store, and make available the sequences.

Collaboration started: July 2022

Partner web site: https://ige3.genomics.unige.ch/

Contact: Mylene.Docquier@unige.ch

HPC Teaching AT HEPIA

HPC course for HES bachelor students.

Teaching parallel progamming (MPI, OpenMP), GPU programming, and cluster usage for hepia bachelor students.

Collaboration started: September 2021

Partner web site: https://www.hesge.ch/hepia/bachelor/informatique-et-systemes-communication

Contact: paul.albuquerque@hesge.ch

Swissdatacube

Earth Observation for monitoring the environment of Switzerland in space and time.

Collaboration with UN Environment/GRID-Geneva and the University of Geneva, Institute for Environemental Sciences. Currently adapting the Datacube software to perform analysis of data on the Unige clusters: Baobab and Yggdrasil.

Collaboration started: March 2021

Project web site: https://www.swissdatacube.org/

Contact: Gregory Giuliani (Unige/IES)

FONDUE

FOrmes Numérisées et Détection Unifiée des Écritures

Interdisciplinary DIgital Humanities collaboration. Implementation of a pipeline for massive Handwritten Text Recognition (HTR) on the University HPC infrastructure.

Collaboration started: March 2021

Contact: Simon Gabay (Unige/Digital Humanities)