Publications

2007

  • Hernandez, Julio; Matter-Sadzinski, Lidia; Skowronska-Krawczyk, Dorota; Chiodini, Florence; Alliod, Christine; Ballivet, Marc; Matter, Jean-Marc (2007) Highly Conserved Sequences Mediate the Dynamic Interplay of Basic Helix-Loop-Helix Proteins Regulating Retinogenesis. J. Biol. Chem. 282 (52) 37894-37905.
  • Dyer, Naomi; Rebollo, Elena; Dominguez, Paloma; Elkhatib, Nadia; Chavrier, Philippe; Daviet, Laurent; Gonzalez, Cayetano; Gonzalez-Gaitan, Marcos (2007) Spermatocyte cytokinesis requires rapid membrane addition mediated by ARF6 on central spindle recycling endosomes. Development 134 (24) 4437-4447.
  • Di Cara, Alessandro; Garg, Abhishek; De Micheli, Giovanni; Xenarios, Ioannis; Mendoza, Luis (2007) Dynamic simulation of regulatory networks using SQUAD. BMC Bioinf. 8 (1) 462.
  • Felberbaum-Corti, Michela; Morel, Etienne; Cavalli, Valeria; Vilbois, Francis; Gruenberg, Jean; Steinhardt, Richard (2007) The Redox Sensor TXNL1 Plays a Regulatory Role in Fluid Phase Endocytosis. PLoS ONE 2 (11) e1144.
  • Hagedorn, Monica; Soldati, Thierry (2007) Erratum: Flotillin and RacH modulate the intracellular immunity of Dictyostelium to Mycobacterium marinum infection. Cell Microbiol. 9 (12) 2984.
  • Luyet, Pierre-Philippe; Falguières, Thomas; Pons, Véronique; Gruenberg, Jean (2007) Endosomal Membrane Dynamics. J. Oral Biosci. 49 (4) 231-243.
  • Morel, Etienne; Gruenberg, Jean; Steinhardt, Richard (2007) The p11/S100A10 Light Chain of Annexin A2 Is Dispensable for Annexin A2 Association to Endosomes and Functions in Endosomal Transport. PLoS ONE 2 (10) e1118.
  • Kerrien, Samuel; Orchard, Sandra; Montecchi-Palazzi, Luisa; Aranda, Bruno; Quinn, Antony F; Vinod, Nisha; Bader, Gary D; Xenarios, Ioannis; Wojcik, Jérôme; Sherman, David; Tyers, Mike; Salama, John J; Moore, Susan; Ceol, Arnaud; Chatr-aryamontri, Andrew; Oesterheld, Matthias; Stümpflen, Volker; Salwinski, Lukasz; Nerothin, Jason; Cerami, Ethan; Cusick, Michael E; Vidal, Marc; Gilson, Michael; Armstrong, John; Woollard, Peter; Hogue, Christopher; Eisenberg, David; Cesareni, Gianni; Apweiler, Rolf; Hermjakob, Henning (2007) Broadening the horizon – level 2.5 of the HUPO-PSI format for molecular interactions. BMC Biol. 5 (1) 44.
  • Del Bene, Filippo; Ettwiller, Laurence; Skowronska-Krawczyk, Dorota; Baier, Herwig; Matter, Jean-Marc; Birney, Ewan; Wittbrodt, Joachim (2007) In Vivo Validation of a Computationally Predicted Conserved Ath5 Target Gene Set. PLoS Genet. 427 (9) 1661-1671.
  • Sobo, Komla; Le Blanc, Isabelle; Luyet, Pierre-Philippe; Fivaz, Marc; Ferguson, Charles; Parton, Robert G.; Gruenberg, Jean; van der Goot, F. Gisou; Valdivia, Raphael (2007) Late Endosomal Cholesterol Accumulation Leads to Impaired Intra-Endosomal Trafficking. PLoS ONE 2 (9) e851.
  • Pino, Paco; Foth, Bernardo Javier; Kwok, Lai-Yu; Sheiner, Lilach; Schepers, Rebecca; Soldati, Thierry; Soldati-Favre, Dominique (2007) Dual Targeting of Antioxidant and Metabolic Enzymes to the Mitochondrion and the Apicoplast of Toxoplasma gondii. PLoS Pathog. 3 (8) 1092-1108.
  • Pantazis, Periklis; González-Gaitán, Marcos (2007) Localized multiphoton photoactivation of paGFP in Drosophila wing imaginal discs. J. Biomed. Opt. 12 (4) 044004.
  • Riezman, Howard (2007) The Long and Short of Fatty Acid Synthesis. Cell 130 (4) 587-588.
  • Taylor, Chris F.; Paton, Norman W.; Lilley, Kathryn S.; Binz, Pierre-Alain; Julian, Randall K.; Jones, Andrew R.; Zhu, Weimin; Apweiler, Rolf; Aebersold, Ruedi; Deutsch, Eric W.; Dunn, Michael J.; Heck, Albert J. R.; Leitner, Alexander; Macht, Marcus; Mann, Matthias; Martens, Lennart; Neubert, Thomas A.; Patterson, Scott D.; Ping, Peipei; Seymour, Sean L.; Souda, Puneet; Tsugita, Akira; Vandekerckhove, Joel; Vondriska, Thomas M.; Whitelegge, Julian P.; Wilkins, Marc R.; Xenarios, Ioannnis; Yates, John R.; Hermjakob, Henning (2007) The minimum information about a proteomics experiment (MIAPE). Nat. Biotechnol. 25 (8) 887-893.
  • Orchard, Sandra; Salwinski, Lukasz; Kerrien, Samuel; Montecchi-Palazzi, Luisa; Oesterheld, Matthias; Stümpflen, Volker; Ceol, Arnaud; Chatr-aryamontri, Andrew; Armstrong, John; Woollard, Peter; Salama, John J.; Moore, Susan; Wojcik, Jérôme; Bader, Gary D.; Vidal, Marc; Cusick, Michael E.; Gerstein, Mark; Gavin, Anne-Claude; Superti-Furga, Giulio; Greenblatt, Jack; Bader, Joel; Uetz, Peter; Tyers, Mike; Legrain, Pierre; Fields, Stan; Mulder, Nicola; Gilson, Michael; Niepmann, Michael; Burgoon, Lyle; Rivas, Javier De Las; Prieto, Carlos; Perreau, Victoria M.; Hogue, Chris; Mewes, Hans-Werner; Apweiler, Rolf; Xenarios, Ioannis; Eisenberg, David; Cesareni, Gianni; Hermjakob, Henning (2007) The minimum information required for reporting a molecular interaction experiment (MIMIx). Nat. Biotechnol. 25 (8) 894-898.
  • Pasquali, Christian; Bertschy-Meier, Dominique; Chabert, Christian; Curchod, Marie-Laure; Arod, Christian; Booth, Randy; Mechtler, Karl; Vilbois, Francis; Xenarios, Ioannis; Ferguson, Colin G.; Prestwich, Glenn D.; Camps, Montserrat; Rommel, Christian (2007) A Chemical Proteomics Approach to Phosphatidylinositol 3-Kinase Signaling in Macrophages. Mol. Cell. Proteomics 6 (11) 1829-1841.
  • Sbrissa, Diego; Ikonomov, Ognian C.; Fu, Zhiyao; Ijuin, Takeshi; Gruenberg, Jean; Takenawa, Tadaomi; Shisheva, Assia (2007) Core Protein Machinery for Mammalian Phosphatidylinositol 3,5-Bisphosphate Synthesis and Turnover That Regulates the Progression of Endosomal Transport. J. Biol. Chem. 282 (33) 23878-23891.
  • Urban, Jörg; Soulard, Alexandre; Huber, Alexandre; Lippman, Soyeon; Mukhopadhyay, Debdyuti; Deloche, Olivier; Wanke, Valeria; Anrather, Dorothea; Ammerer, Gustav; Riezman, Howard; Broach, James R.; De Virgilio, Claudio; Hall, Michael N.; Loewith, Robbie (2007) Sch9 Is a Major Target of TORC1 in Saccharomyces cerevisiae. Molecular Cell 26 (5) 663-674.
  • Hagedorn, Monica; Soldati, Thierry (2007) Flotillin and RacH modulate the intracellular immunity of Dictyostelium to Mycobacterium marinum infection. Cell Microbiol. 9 (11) 2716-2733.
  • Roux, Aurélien; Biais, Nicolas; Bassereau, Patricia (2007) Import-export dans la cellule. Pour la Science (355) 46-52.
  • Sobo, Komla; Chevallier, Julien; Parton, Robert G.; Gruenberg, Jean; van der Goot, F. Gisou; Valdivia, Raphael (2007) Diversity of Raft-Like Domains in Late Endosomes. PLoS ONE 2 (4) e391.
  • Sun, Yidi; Carroll, Susheela; Kaksonen, Marko; Toshima, Junko Y.; Drubin, David G. (2007) PtdIns(4,5)P2 turnover is required for multiple stages during clathrin- and actin-dependent endocytic internalization. J. Cell Biol. 177 (2) 355-367.
  • Tirone, Fabiana; Cox, Jos A. (2007) NADPH oxidase 5 (NOX5) interacts with and is regulated by calmodulin. FEBS Lett. 581 (6) 1202-1208.
  • Kornmann, Benoît; Schaad, Olivier; Bujard, Hermann; Takahashi, Joseph S.; Schibler, Ueli; O\'Rahilly, Steve (2007) System-Driven and Oscillator-Dependent Circadian Transcription in Mice with a Conditionally Active Liver Clock. PLoS Biol. 6 (2) e34.
  • Kicheva, Anna; Pantazis, Periklis; Bollenbach, Tobias; Kalaidzidis, Yannis; Bittig, Thomas; Julicher, Frank; Gonzalez-Gaitan, Marcos (2007) Kinetics of Morphogen Gradient Formation. Science 315 (5811) 521-525.
  • Mukhopadhyay, Debdyuti; Riezman, Howard (2007) Proteasome-Independent Functions of Ubiquitin in Endocytosis and Signaling. Science 315 (5809) 201-205.
  • Bollenbach, Tobias; Kruse, K.; Pantazis, Periklis; González-Gaitán, Marcos; Jülicher, Frank (2007) Morphogen transport in epithelia. Phys. Rev. E 75 (1) 011901.
  • Kornmann, Benoit; Schaad, Olivier; Reinke, H.; Saini, C.; Schibler, Ueli (2007) Regulation of Circadian Gene Expression in Liver by Systemic Signals and Hepatocyte Oscillators. Cold Spring Harbor Symp. Quant. Biol. 72 319-330.
  • Pellissier, François; Gerber, Alan; Bauer, Christoph; Ballivet, Marc; Ossipow, Vincent (2007) The adhesion molecule Necl-3/SynCAM-2 localizes to myelinated axons, binds to oligodendrocytes and promotes cell adhesion. BMC Neurosci. 8 (1) 90.