Publications

2011

  1. Lelièvre, Elise C. Lek, Madelen Boije, Henrik Houille-Vernes, Laura Brajeul, Valérie Slembrouck, Amélie Roger, Jérôme E. Sahel, José-Alain Matter, Jean-Marc Sennlaub, Florian Hallböök, Finn Goureau, Olivier Guillonneau, Xavier (2011) Ptf1a/Rbpj complex inhibits ganglion cell fate and drives the specification of all horizontal cell subtypes in the chick retina. Dev. Biol. 358 (2) 296-308.
  2. Castanon, Irinka González-Gaitán, Marcos (2011) Oriented cell division in vertebrate embryogenesis. Curr. Opin. Cell Biol. 23 (6) 697-704.
  3. Castanon, Irinka González-Gaitán, Marcos (2011) Integrating levels of complexity: a trend in developmental biology. Curr. Opin. Cell Biol. 23 (6) 647-649.
  4. Wartlick, Ortrud González-Gaitán, Marcos (2011) The missing link: implementation of morphogenetic growth control on the cellular and molecular level. Curr. Opin. Genet. Dev. 21 (6) 690-695.
  5. Wartlick, Ortrud Mumcu, Peer Jülicher, Frank Gonzalez-Gaitan, Marcos (2011) Understanding morphogenetic growth control – lessons from flies. Nat. Rev. Mol. Cell Biol. 12 (9) 594-604.
  6. Campos, Cláudia Kamiya, Mako Banala, Sambashiva Johnsson, Kai González-Gaitán, Marcos (2011) Labelling cell structures and tracking cell lineage in zebrafish using SNAP-tag. Dev. Dyn. 240 (4) 820-827.
  7. Semrau, Stefan Holtzer, Laurent González-Gaitán, Marcos Schmidt, Thomas (2011) Quantification of Biological Interactions with Particle Image Cross-Correlation Spectroscopy (PICCS). Biophys. J. 100 (7) 1810-1818.
  8. Wartlick, Ortrud Mumcu, P. Kicheva, Anna Bittig, T. Seum, Carole Julicher, Frank Gonzalez-Gaitan, Marcos (2011) Dynamics of Dpp Signaling and Proliferation Control. Science 331 (6021) 1154-1159.
  9. Moreau, Dimitri Scott, Cameron Gruenberg, Jean (2011) A Novel Strategy to Identify Drugs that Interfere with Endosomal Lipids. CHIMIA 65 (11) 846-848.
  10. Scott, Cameron C Bissig, Christin Gruenberg, Jean (2011) Duelling functions of the V-ATPase. EMBO J. 30 (20) 4113-4115.
  11. Brankatschk, Ben Pons, Véronique Parton, Robert G. Gruenberg, Jean Rappoport, Joshua Z. (2011) Role of SNX16 in the Dynamics of Tubulo-Cisternal Membrane Domains of Late Endosomes. PLoS ONE 6 (7) e21771.
  12. Laulagnier, Karine Schieber, Nicole L. Maritzen, Tanja Haucke, Volker Parton, Robert G. Gruenberg, Jean (2011) Role of AP1 and Gadkin in the traffic of secretory endo-lysosomes. Mol. Biol. Cell 22 (12) 2068-2082.
  13. Scott, Cameron C. Gruenberg, Jean (2011) Ion flux and the function of endosomes and lysosomes: pH is just the start. BioEssays 33 (2) 103-110.
  14. Ternes, Philipp Feussner, Kirstin Werner, Stephanie Lerche, Jennifer Iven, Tim Heilmann, Ingo Riezman, Howard Feussner, Ivo (2011) Disruption of the ceramide synthase LOH1 causes spontaneous cell death in Arabidopsis thaliana. New Phytol. 192 (4) 841-854.
  15. Alvarez-Vasquez, Fernando Riezman, Howard Hannun, Yusuf A. Voit, Eberhard O. Zhang, Zhengguang (2011) Mathematical Modeling and Validation of the Ergosterol Pathway in Saccharomyces cerevisiae. PLoS ONE 6 (12) e28344.
  16. Sturzenegger, Susi Johnsson, Kai Riezman, Howard (2011) NCCR Chemical Biology: Interdisciplinary Research Excellence, Outreach, Education, and New Tools for Switzerland. CHIMIA 65 (11) 832-834.
  17. Lissina, Elena Young, Brian Urbanus, Malene L. Guan, Xue Li Lowenson, Jonathan Hoon, Shawn Baryshnikova, Anastasia Riezman, Isabelle Michaut, Magali Riezman, Howard Cowen, Leah E. Wenk, Markus R. Clarke, Steven G. Giaever, Guri Nislow, Corey Cooper, Sara J. (2011) A Systems Biology Approach Reveals the Role of a Novel Methyltransferase in Response to Chemical Stress and Lipid Homeostasis. PLoS Genet. 7 (10) e1002332.
  18. Souza, Cleiton M. Schwabe, Tatjana M.E. Pichler, Harald Ploier, Birgit Leitner, Erich Guan, Xue Li Wenk, Markus R. Riezman, Isabelle Riezman, Howard (2011) A stable yeast strain efficiently producing cholesterol instead of ergosterol is functional for tryptophan uptake, but not weak organic acid resistance. Metab. Eng. 13 (5) 555-569.
  19. Castillon, Guillaume A. Aguilera-Romero, Auxiliadora Manzano-Lopez, Javier Epstein, Sharon Kajiwara, Kentaro Funato, Kouichi Watanabe, Reika Riezman, Howard Muniz, Manuel (2011) The yeast p24 complex regulates GPI-anchored protein transport and quality control by monitoring anchor remodeling. Mol. Biol. Cell 22 (16) 2924-2936.
  20. Castillon, Guillaume A. Aguilera-Romero, Auxiliadora Manzano-Lopez, Javier Epstein, Sharon Kajiwara, Kentaro Funato, Kouichi Watanabe, Reika Riezman, Howard Muniz, Manuel (2011) The yeast p24 complex regulates GPI-anchored protein transport and quality control by monitoring anchor remodeling. Mol. Biol. Cell 22 (16) 2924-2936.
  21. Hannich, J. Thomas Umebayashi, Kyohei Riezman, Howard (2011) Distribution and Functions of Sterols and Sphingolipids. Cold Spring Harbor Perspect. Biol. 3 (5) a004762.
  22. Fujita, Morihisa Watanabe, Reika Jaensch, Nina Romanova-Michaelides, Maria Satoh, Tadashi Kato, Masaki Riezman, Howard Yamaguchi, Yoshiki Maeda, Yusuke Kinoshita, Taroh (2011) Sorting of GPI-anchored proteins into ER exit sites by p24 proteins is dependent on remodeled GPI. J. Cell Biol. 194 (1) 61-75.
  23. Fujita, Morihisa Watanabe, Reika Jaensch, Nina Romanova-Michaelides, Maria Satoh, Tadashi Kato, Masaki Riezman, Howard Yamaguchi, Yoshiki Maeda, Yusuke Kinoshita, Taroh (2011) Sorting of GPI-anchored proteins into ER exit sites by p24 proteins is dependent on remodeled GPI. J. Cell Biol. 194 (1) 61-75.
  24. Ternes, Philipp Wobbe, Tobias Schwarz, Marnie Albrecht, Sandra Feussner, Kirstin Riezman, Isabelle Cregg, James M. Heinz, Ernst Riezman, Howard Feussner, Ivo Warnecke, Dirk (2011) Two Pathways of Sphingolipid Biosynthesis Are Separated in the Yeast Pichia pastoris. J. Biol. Chem. 286 (13) 11401-11414.
  25. Chang-Ileto, Belle Frere, Samuel G. Chan, Robin B. Voronov, Sergey V. Roux, Aurélien Di Paolo, Gilbert (2011) Synaptojanin 1-Mediated PI(4,5)P2 Hydrolysis Is Modulated by Membrane Curvature and Facilitates Membrane Fission. Dev. Cell 20 (2) 206-218.
  26. Dunand-Sauthier, Isabelle Santiago-Raber, Marie-Laure Capponi, Leonardo Vejnar, Charles E. Schaad, Olivier Irla, Magali Seguin-Estevez, Queralt Descombes, Patrick Zdobnov, Evgeny M. Acha-Orbea, Hans Reith, Walter (2011) Silencing of c-Fos expression by microRNA-155 is critical for dendritic cell maturation and function. Blood 117 (17) 4490-4500.
  27. Papaioannou, Marilena D. Lagarrigue, Melanie Vejnar, Charles E. Rolland, Antoine D. Kuhne, Francoise Aubry, Florence Schaad, Olivier Fort, Alexandre Descombes, Patrick Neerman-Arbez, Marguerite Guillou, Florian Zdobnov, Evgeny M. Pineau, Charles Nef, Serge (2011) Loss of Dicer in Sertoli Cells Has a Major Impact on the Testicular Proteome of Mice. Mol. Cell. Proteomics 10 (4) M900587-MCP200.
  28. Carnell, Michael Zech, Tobias Calaminus, Simon D. Ura, Seiji Hagedorn, Monica Johnston, Simon A. May, Robin C. Soldati, Thierry Machesky, Laura M. Insall, Robert H. (2011) Actin polymerization driven by WASH causes V-ATPase retrieval and vesicle neutralization before exocytosis. J. Cell Biol. 193 (5) 831-839.
  29. Lelong, Emmanuelle Marchetti, Anna Guého, Aurélie Lima, Wanessa C. Sattler, Natascha Molmeret, Maëlle Hagedorn, Monica Soldati, Thierry Cosson, Pierre (2011) Role of magnesium and a phagosomal P-type ATPase in intracellular bacterial killing. Cell. Microbiol. 13 (2) 246-258.
  30. Shlomovitz, Roie Gov, Nir S. Roux, Aurélien (2011) Membrane-mediated interactions and the dynamics of dynamin oligomers on membrane tubes. New J. Phys. 13 (6) 065008.
  31. Hulo, Chantal de Castro, Edouard Masson, Patrick Bougueleret, Lydie Bairoch, Amos Xenarios, Ioannis Le Mercier, Philippe (2011) ViralZone: a knowledge resource to understand virus diversity. Nucleic Acids Res. 39 (suppl 1) D576-D582.
  32. Kapur, Karen Schüpbach, Thierry Xenarios, Ioannis Kutalik, Zoltán Bergmann, Sven Xiong, Momiao (2011) Comparison of Strategies to Detect Epistasis from eQTL Data. PLoS ONE 6 (12) e28415.
  33. Riba-Grognuz, Oksana Keller, Laurent Falquet, Laurent Xenarios, Ioannis Wurm, Yannick (2011) Visualization and quality assessment of de novo genome assemblies. Bioinformatics 27 (24) 3425-3426.
  34. Di Tommaso, Paolo Moretti, Sebastien Xenarios, Ioannis Orobitg, Miquel Montanyola, Alberto Chang, Jia-Ming Taly, Jean-François Notredame, Cedric (2011) T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension. Nucleic Acids Res. 39 (suppl) W13-W17.
  35. Sankar, Martial Osmont, Karen S. Rolcik, Jakub Gujas, Bojan Tarkowska, Danuse Strnad, Miroslav Xenarios, Ioannis Hardtke, Christian S. (2011) A qualitative continuous model of cellular auxin and brassinosteroid signaling and their crosstalk. Bioinformatics 27 (10) 1404-1412.
  36. Magrane, Michele UniProt Consortium, (2011) UniProt Knowledgebase: a hub of integrated protein data. Database bar009.
  37. Valsesia, Armand Rimoldi, Donata Martinet, Danielle Ibberson, Mark Benaglio, Paola Quadroni, Manfredo Waridel, Patrice Gaillard, Muriel Pidoux, Mireille Rapin, Blandine Rivolta, Carlo Xenarios, Ioannis Simpson, Andrew J. G. Antonarakis, Stylianos E. Beckmann, Jacques S. Jongeneel, C. Victor Iseli, Christian Stevenson, Brian J. Krahe, Ralf (2011) Network-Guided Analysis of Genes with Altered Somatic Copy Number and Gene Expression Reveals Pathways Commonly Perturbed in Metastatic Melanoma. PLoS ONE 6 (4) e18369.
  38. Wurm, Yannick Wang, John Riba-Grognuz, Oksana Corona, Miguel Nygaard, Sanne Hunt, Brendan G. Ingram, Krista K. Falquet, Laurent Nipitwattanaphon, Mingkwan Gotzek, Dietrich Dijkstra, Michiel B. Oettler, Jan Comtesse, Fabien Shih, Cheng-Jen Wu, Wen-Jer Yang, Chin-Cheng Thomas, Jerome Beaudoing, Emmanuel Pradervand, Sylvain Flegel, Volker Cook, Erin D. Fabbretti, Roberto Stockinger, Heinz Long, Li Farmerie, William G. Oakey, Jane Boomsma, Jacobus J. Pamilo, Pekka Yi, Soojin V. Heinze, Jürgen Goodisman, Michael A. D. Farinelli, Laurent Harshman, Keith Hulo, Nicolas Cerutti, Lorenzo Xenarios, Ioannis Shoemaker, DeWayne Keller, Laurent (2011) The genome of the fire ant Solenopsis invicta. Proc. Natl. Acad. Sci. U. S. A. 108 (14) 5679-5684.
  39. Boeckmann, Brigitte Robinson-Rechavi, Marc Xenarios, Ioannis Dessimoz, Christophe (2011) Conceptual framework and pilot study to benchmark phylogenomic databases based on reference gene trees. Briefings Bioinf. 12 (5) 423-435.
  40. Brach, Thorsten Specht, Tanja Kaksonen, Marko (2011) Reassessment of the role of plasma membrane domains in the regulation of vesicular traffic in yeast. J. Cell Sci. 124 (3) 328-337.
  41. Kukulski, Wanda Schorb, Martin Welsch, Sonja Picco, Andrea Kaksonen, Marko Briggs, John A.G. (2011) Correlated fluorescence and 3D electron microscopy with high sensitivity and spatial precision. J. Cell Biol. 208 (1) 3-119.