School of Chemistry and Biochemistry School of Chemistry and Biochemistry

Publications

2013

  • Cohen, Yifat; Megyeri, Márton; Chen, Oscar C. W.; Condomitti, Giuseppe; Riezman, Isabelle; Loizides-Mangold, Ursula; Abdul-Sada, Alaa; Rimon, Nitzan; Riezman, Howard; Platt, Frances M.; Futerman, Anthony H.; Schuldiner, Maya; Michnick, Stephen W. (2013) The Yeast P5 Type ATPase, Spf1, Regulates Manganese Transport into the Endoplasmic Reticulum. PLoS ONE 8 (12) e85519.
  • Godlee, Camilla; Kaksonen, Marko (2013) From uncertain beginnings: Initiation mechanisms of clathrin-mediated endocytosis. The Journal of Cell Biology 104 (10) 3793-725.
  • Zimmermann, Christine; Santos, Aline; Gable, Kenneth; Epstein, Sharon; Gururaj, Charulatha; Chymkowitch, Pierre; Pultz, Dennis; Rødkær, Steven V.; Clay, Lorena; Bjørås, Magnar; Barral, Yves; Chang, Amy; Færgeman, Nils J.; Dunn, Teresa M.; Riezman, Howard; Enserink, Jorrit M. (2013) TORC1 Inhibits GSK3-Mediated Elo2 Phosphorylation to Regulate Very Long Chain Fatty Acid Synthesis and Autophagy. Cell Rep. 5 (4) 1036-1046.
  • Ding, Jun; Loizides-Mangold, Ursula; Rando, Gianpaolo; Zoete, Vincent; Michielin, Olivier; Reddy, Janardan K.; Wahli, Walter; Riezman, Howard; Thorens, Bernard (2013) The Peroxisomal Enzyme L-PBE Is Required to Prevent the Dietary Toxicity of Medium-Chain Fatty Acids. Cell Rep. 5 (1) 248-258.
  • Lindberg, Lina; Santos, Aline XS.; Riezman, Howard; Olsson, Lisbeth; Bettiga, Maurizio; Oresic, Matej (2013) Lipidomic Profiling of Saccharomyces cerevisiae and Zygosaccharomyces bailii Reveals Critical Changes in Lipid Composition in Response to Acetic Acid Stress. PLoS ONE 8 (9) e73936.
  • Maeda, Kenji; Anand, Kanchan; Chiapparino, Antonella; Kumar, Arun; Poletto, Mattia; Kaksonen, Marko; Gavin, Anne-Claude (2013) Interactome map uncovers phosphatidylserine transport by oxysterol-binding proteins. Nature 501 (7466) 257-261.
  • Kemp, Louise E.; Rusch, Marion; Adibekian, Alexander; Bullen, Hayley E.; Graindorge, Arnault; Freymond, Céline; Rottmann, Matthias; Braun-Breton, Catherine; Baumeister, Stefan; Porfetye, Arthur T.; Vetter, Ingrid R.; Hedberg, Christian; Soldati-Favre*, Dominique (2013) Characterization of a Serine Hydrolase Targeted by Acyl-protein Thioesterase Inhibitors in Toxoplasma gondii. J. Biol. Chem. 288 (38) 27002-27018.
  • Bonzanni, Nicola; Garg, Abhishek; Feenstra, K. Anton; Schutte, Judith; Kinston, Sarah; Miranda-Saavedra, Diego; Heringa, Jaap; Xenarios, Ioannis; Gottgens, Berthold (2013) Hard-wired heterogeneity in blood stem cells revealed using a dynamic regulatory network model. Bioinformatics 29 (13) i80-i88.
  • Gehin, Charlotte; Montenegro, Javier; Bang, Eun-Kyoung; Cajaraville, Ana; Takayama, Shota; Hirose, Hisaaki; Futaki, Shiroh; Matile, Stefan; Riezman, Howard (2013) Dynamic Amphiphile Libraries to Screen for the “Fragrant” Delivery of siRNA into HeLa Cells and Human Primary Fibroblasts. J. Am. Chem. Soc. 135 (25) 9295-9298.
  • Zufferey, Anne; Ibberson, Mark; Reny, Jean-Luc; Xenarios, Ioannis; Sanchez, Jean-Charles; Fontana, Pierre (2013) Unraveling modulators of platelet reactivity in cardiovascular patients using omics strategies: Towards a network biology paradigm. Transl. Proteomics 1 (1) 25-37.
  • Guex, Nicolas; Iseli, Christian; Syngelaki, Argyro; Deluen, Cécile; Pescia, Graziano; Nicolaides, Kypros H.; Xenarios, Ioannis; Conrad, Bernard (2013) A robust second-generation genome-wide test for fetal aneuploidy based on shotgun sequencing cell-free DNA in maternal blood. Prenatal Diagn. 33 (7) 707-710.
  • Kicheva, Anna; Holtzer, Laurent; Wartlick, Ortrud; Schmidt, Thomas; González-Gaitán, Marcos (2013) Quantitative Imaging of Morphogen Gradients in Drosophila Imaginal Discs. Cold Spring Harbor Protoc. 2013 (5) 387-403.
  • Gallego, Oriol; Specht, Tanja; Brach, Thorsten; Kumar, Arun; Gavin, Anne-Claude; Kaksonen, Marko; Keen, James (2013) Detection and Characterization of Protein Interactions In Vivo by a Simple Live-Cell Imaging Method. PLoS ONE 8 (5) e62195.
  • Schmitter, Daniel; Wachowicz, Paulina; Sage, Daniel; Chasapi, Anastasia; Xenarios, Ioannis; Simanis, Viesturs; Unser, Michael (2013) A 2D/3D image analysis system to track fluorescently labeled structures in rod-shaped cells: application to measure spindle pole asymmetry during mitosis. Cell Div. 8:6.
  • Castillon, Guillaume Alain; Michon, Laetitia; Watanabe, Reika (2013) Apical sorting of lysoGPI-anchored proteins occurs independent of association with detergent-resistant membranes but dependent on their N-glycosylation. Mol. Biol. Cell 24 (12) 2021-2033.
  • Topf, Florian; Schvartz, Domitille; Gaudet, Pascale; Priego-Capote, F.; Zufferey, Anne; Turck, Natacha; Binz, Pierre-Alain; Fontana, Pierre; Wiederkehr, Andreas; Finamore, Francesco; Xenarios, Ioannis; Goodlett, D.; Kussmann, M.; Bergsten, P.; Sanchez, Jean-Charles (2013) The Human Diabetes Proteome Project (HDPP): From network biology to targets for therapies and prevention. Transl. Proteomics 1 (1) 3-11.
  • Zhang, Xuezhi; Krause, Karl-Heinz; Xenarios, Ioannis; Soldati, Thierry; Boeckmann, Brigitte; Haslam, Niall James (2013) Evolution of the Ferric Reductase Domain (FRD) Superfamily: Modularity, Functional Diversification, and Signature Motifs. PLoS ONE 8 (3) e58126.
  • Chiodini, Florence; Matter-Sadzinski, Lidia; Rodrigues, Tania; Skowronska-Krawczyk, Dorota; Brodier, Laurent; Schaad, Olivier; Bauer, Christoph; Ballivet, Marc; Matter, Jean-Marc (2013) A Positive Feedback Loop between ATOH7 and a Notch Effector Regulates Cell-Cycle Progression and Neurogenesis in the Retina. Cell Rep. 3 (3) 796-807.
  • Satoh, Takunori; Inagaki, Tsuyoshi; Liu, Ziguang; Watanabe, Reika; Satoh, Akiko K. (2013) GPI biosynthesis is essential for rhodopsin sorting at the trans-Golgi network in Drosophila photoreceptors. Development 140 (2) 385-394.
  • Epstein, Sharon; Riezman, Howard (2013) Sphingolipid signaling in yeast: potential implications for understanding disease. Front. Biosci., Elite Ed. 5 97-108.
  • Guan, Xue Li; Cestra, Gianluca; Shui, Guanghou; Kuhrs, Antje; Schittenhelm, Ralf B.; Hafen, Ernst; van der Goot, F. Gisou; Robinett, Carmen C.; Gatti, Maurizio; Gonzalez-Gaitan, Marcos; Wenk, Markus R. (2013) Biochemical Membrane Lipidomics during Drosophila Development. Dev. Cell 24 (1) 98-111.
  • Bugliani, Marco; Liechti, Robin; Cheon, Hwanju; Suleiman, Mara; Marselli, Lorella; Kirkpatrick, Clare; Filipponi, Franco; Boggi, Ugo; Xenarios, Ioannis; Syed, Farooq; Ladriere, Laurence; Wollheim, Claes; Lee, Myung-Shik; Marchetti, Piero (2013) Microarray analysis of isolated human islet transcriptome in type 2 diabetes and the role of the ubiquitin–proteasome system in pancreatic beta cell dysfunction. Molecular and Cellular Endocrinology 367 (1-2) 1-10.
  • Castanon, Irinka; Abrami, Laurence; Holtzer, Laurent; Heisenberg, Carl-Philipp; van der Goot, F. Gisou; González-Gaitán, Marcos (2013) Anthrax toxin receptor 2a controls mitotic spindle positioning. Nat. Cell Biol. 15 (1) 28-39.
  • Cox, Jos A. (2013) Divers Models of Divalent Cation Interaction to Calcium-Binding Proteins: Techniques and Anthology. Calcium-Binding Proteins and RAGE Volume 963Ed. Heizmann, Claus W.Methods in Molecular Biology. Springer. 15-35.