Publications

2010

  • Assaker, Gloria; Ramel, Damien; Wculek, Stefanie K.; Gonzalez-Gaitan, Marcos; Emery, Gregory (2010) Spatial restriction of receptor tyrosine kinase activity through a polarized endocytic cycle controls border cell migration. Proc. Natl. Acad. Sci. U. S. A. 107 (52) 22558-22563.
  • Gordon, Vicki; Bhadel, Shriti; Wunderlich, Winfried; Zhang, JoAnn; Ficarro, Scott B.; Mollah, Sahana A.; Shabanowitz, Jeffrey; Hunt, Donald F.; Xenarios, Ioannis; Hahn, William C.; Conaway, Mark; Carey, Michael F.; Gioeli, Daniel (2010) CDK9 Regulates AR Promoter Selectivity and Cell Growth through Serine 81 Phosphorylation. Mol. Endocrinol. 24 (12) 2267-2280.
  • Morlot, Sandrine; Lenz, Martin; Prost, Jacques; Joanny, Jean-François; Roux, Aurélien (2010) Deformation of Dynamin Helices Damped by Membrane Friction. Biophys. J. 99 (11) 3580-3588.
  • Gallego, Oriol; Betts, Matthew J.; Gvozdenovic-Jeremic, Jelena; Maeda, Kenji; Matetzki, Christian; Aguilar-Gurrieri, Carmen; Beltran-Alvarez, Pedro; Bonn, Stefan; Fernández-Tornero, Carlos; Jensen, Lars Juhl; Kuhn, Michael; Trott, Jamie; Rybin, Vladimir; Müller, Christoph W.; Bork, Peer; Kaksonen, Marko; Russell, Robert B.; Gavin, Anne-Claude (2010) A systematic screen for protein–lipid interactions in Saccharomyces cerevisiae. Mol. Syst. Biol. 6 (1) 430.
  • Goursot, A.; Mineva, T.; Bissig, Christin; Gruenberg, Jean; Salahub, D. R. (2010) Structure, Dynamics, and Energetics of Lysobisphosphatidic Acid (LBPA) Isomers. J. Phys. Chem. B 114 (47) 15712-15720.
  • Roux, Aurélien; Plastino, Julie (2010) Actin takes its hat off to dynamin. EMBO J. 29 (21) 3591-3592.
  • Boulais, Jonathan; Trost, Matthias; Landry, Christian R.; Dieckmann, Régis; Levy, Emmanuel D.; Soldati, Thierry; Michnick, Stephen W.; Thibault, Pierre; Desjardins, Michel (2010) Molecular characterization of the evolution of phagosomes. Mol. Syst. Biol. 6 (1) 423.
  • Carvalho, Maria; Schwudke, Dominik; Sampaio, Julio L.; Palm, Wilhelm; Riezman, Isabelle; Dey, Gautam; Gupta, Gagan D.; Mayor, Satyajit; Riezman, Howard; Shevchenko, Andrej; Kurzchalia, Teymuras V.; Eaton, Suzanne (2010) Survival strategies of a sterol auxotroph. Development 137 (21) 3675-3685.
  • Liechti, Robin; Csardi, Gábor; Bergmann, Sven; Schutz, Frédéric; Sengstag, Thierry; Boj, Sylvia F.; Servitja, Joan-Marc; Ferrer, Jorge; Van Lommel, Leentje; Schuit, Frans; Klinger, Sonia; Thorens, Bernard; Naamane, Najib; Eizirik, Decio L.; Marselli, Lorella; Bugliani, Marco; Marchetti, Piero; Lucas, Stephanie; Holm, Cecilia; Jongeneel, C. Victor; Xenarios, Ioannis (2010) EuroDia: a beta-cell gene expression resource. Database baq024.
  • Calvo-Garrido, Javier; Carilla-Latorre, Sergio; Kubohara, Yuzuru; Santos-Rodrigo, Natalia; Mesquita, Ana; Soldati, Thierry; Golstein, Pierre; Escalante, Ricardo (2010) Autophagy in Dictyostelium: Genes and pathways, cell death and infection. Autophagy 6 (6) 686-701.
  • Bourquin, Florence; Riezman, Howard; Capitani, Guido; Grütter, Markus G. (2010) Structure and Function of Sphingosine-1-Phosphate Lyase, a Key Enzyme of Sphingolipid Metabolism. Structure 18 (8) 1054-1065.
  • Liechti, Robin; Gleizes, Anne; Kuznetsov, Dmitry; Bougueleret, Lydie; Le Mercier, Philippe; Bairoch, Amos; Xenarios, Ioannishttp://openflu.vital-it.ch (2010) OpenFluDB, a database for human and animal influenza virus. Database baq004.
  • Mottola, Giovanna; Classen, Anne-Kathrin; Gonzalez-Gaitan, Marcos; Eaton, Suzanne; Zerial, Marino (2010) A novel function for the Rab5 effector Rabenosyn-5 in planar cell polarity. Development 137 (14) 2353-2364.
  • Schupbach, Thierry; Xenarios, Ioannis; Bergmann, Sven; Kapur, Karen (2010) FastEpistasis: a high performance computing solution for quantitative trait epistasis. Bioinformatics 26 (11) 1468-1469.
  • Rivier, Anne-Sophie; Castillon, Guillaume A.; Michon, Laetitia; Fukasawa, Masayoshi; Romanova-Michaelides, Maria; Jaensch, Nina; Hanada, Kentaro; Watanabe, Reika (2010) Exit of GPI-Anchored Proteins from the ER Differs in Yeast and Mammalian Cells. Traffic 11 (8) 1017-1033.
  • Dieckmann, Régis; von Heyden, Yosuke; Kistler, Claudia; Gopaldass, Navin; Hausherr, Stéphanie; Crawley, Scott William; Schwarz, Eva C.; Diensthuber, Ralph P.; Côté, Graham P.; Tsiavaliaris, Georgios; Soldati, Thierry (2010) A Myosin IK-Abp1-PakB Circuit Acts as a Switch to Regulate Phagocytosis Efficiency. Mol. Biol. Cell 21 (9) 1505-1518.
  • Radu, Laura; Durussel, Isabelle; Assairi, Liliane; Blouquit, Yves; Miron, Simona; Cox, Jos A.; Craescu, Constantin T. (2010) Scherffelia dubia Centrin Exhibits a Specific Mechanism for Ca2+-Controlled Target Binding. Biochemistry 49 (20) 4383-4394.
  • Dominiczak, Anna F.; Herget-Rosenthal, Stefan; Delles, Christian; Fliser, Danilo; Fournier, Isabelle; Graber, Armin; Girolami, Mark; Holmes, Elaine; Lang, Florian; Molina, Franck; Nicholson, Jeremy; Remuzzi, Giuseppe; Rossing, Peter; Rudolph, Karl Lenhard; Wolkenhauer, Olaf; Xenarios, Ioannis; Zubarev, Roman; Zubov, Dimitry; Vlahou, Antonia; Schanstra, Joost P. (2010) Systems biology to battle vascular disease. Nephrol., Dial., Transplant. 25 (4) 1019-1022.
  • Pino, Paco; Aeby, Eric; Foth, Bernardo Javier; Sheiner, Lilach; Soldati, Thierry; Schneider, Andre; Soldati-Favre, Dominique (2010) Mitochondrial translation in absence of local tRNA aminoacylation and methionyl tRNAMet formylation in Apicomplexa. Mol. Microbiol. 76 (3) 706-718.
  • Ojha, Mukti; Cattaneo, Arlette; Hugh, Séverine; Pawlowski, Jan; Cox, Jos A. (2010) Structure, expression and function of Allomyces arbuscula CDP II (metacaspase) gene. Gene 457 (1-2) 25-34.
  • Roux, Aurélien; Koster, Gerbrand; Lenz, Martin; Sorre, Benoît; Manneville, Jean-Baptiste; Nassoy, Pierre; Bassereau, Patricia (2010) Membrane curvature controls dynamin polymerization. Proc. Natl. Acad. Sci. U. S. A. 107 (9) 4141-4146.
  • Guan, Xue Li Riezman, Isabelle Wenk, Markus R. Riezman, Howard (2010) Yeast Lipid Analysis and Quantification by Mass Spectrometry. Guide to Yeast Genetics: Functional Genomics, Proteomics, and Other Systems Analysis Volume 470 (Chapter 15)Methods in Enzymology. Elsevier. 369-391.
  • Jungo, Florence; Estreicher, Anne; Bairoch, Amos; Bougueleret, Lydie; Xenarios, Ioannis (2010) Animal Toxins: How is Complexity Represented in Databases?. Toxins 2 (12) 262-282.
  • Cederroth, Christopher R.; Zimmermann, Celine; Beny, Jean-Louis; Schaad, Olivier; Combepine, Chantal; Descombes, Patrick; Doerge, Daniel R.; Pralong, François P.; Vassalli, Jean-Dominique; Nef, Serge (2010) Potential detrimental effects of a phytoestrogen-rich diet on male fertility in mice. Mol. Cell. Endocrinol. 321 (2) 152-160.
  • Guex, Nicolas; Migliavacca, Eugenia; Xenarios, Ioannis (2010) Multiple Imputations Applied to the DREAM3 Phosphoproteomics Challenge: A Winning Strategy. PLoS ONE 5 (1) e8012.
  • Santuari, Luca; Pradervand, Sylvain; Amiguet-Vercher, Amelia-Maria; Thomas, Jerôme; Dorcey, Eavan; Harshman, Keith; Xenarios, Ioannis; Juenger, Thomas E.; Hardtke, Christian S. (2010) Substantial deletion overlap among divergent Arabidopsis genomes revealed by intersection of short reads and tiling arrays. Genome Biol. 11 (1) R4.
  • Tirone, Fabiana; Radu, Laura; Craescu, Constantin T.; Cox, Jos A. (2010) Identification of the Binding Site for the Regulatory Calcium-Binding Domain in the Catalytic Domain of NOX5. Biochemistry 49 (4) 761-771.
  • Berardini, Tanya Z.; Li, Donghui; Huala, Eva; Bridges, Susan; Burgess, Shane; McCarthy, Fiona; Carbon, Seth; Lewis, Suzanna E.; Mungall, Christopher J.; Abdulla, Amina; Wood, Valerie; Feltrin, Erika; Valle, Giorgio; Chisholm, Rex L.; Fey, Petra; Gaudet, Pascale; Kibbe, Warren; Basu, Siddhartha; Bushmanova, Yulia; Eilbeck, Karen; Siegele, Deborah A.; McIntosh, Brenley; Renfro, Daniel; Zweifel, Adrienne; Hu, James C.; Ashburner, Michael; Tweedie, Susan; Alam-Faruque, Yasmin; Apweiler, Rolf; Auchinchloss, Andrea; Bairoch, Amos; Barrell, Daniel; Binns, David; Blatter, Marie-Claude; Bougueleret, Lydie; Boutet, Emmanuel; Breuza, Lionel; Bridge, Alan; Browne, Paul; Chan, Wei Mun; Coudert, Elizabeth; Daugherty, Louis; Dimmer, Emily; Eberhardt, Ruth; Estreicher, Anne; Famiglietti, Livia; Ferro-Rojas, Serenella; Feuermann, Marc; Foulger, Rebecca; Gruaz-Gumowski, Nadine; Hinz, Ursula; Huntley, Rachael; Jimenez, Silvia; Jungo, Florence; Keller, Guillaume; Laiho, kati; Legge, Duncan; Lemercier, Philippe; Lieberherr, Damien; Magrane, Michele; O\'Donovan, Claire; Pedruzzi, Ivo; Poux, Sylvain; Rivoire, Catherine; Roechert, Bernd; Sawford, Tony; Schneider, Michel; Stanley, Eleanor; Stutz, Andre; Sundaram, Shyamala; tognolli, Michael; Xenarios, Ioannis; Harris, Midori A.; Deegan, Jennifer I.; Ireland, Amelia; Lomax, Jane; Jaiswal, Pankaj; Chibucos, Marcus; Gwinn, Michelle; Wortman, Jennifer; Hannick, Linda; Madupu, Ramana; Botstein, David; Dolinski, Kara; Livstone, Michael S.; Oughtred, Rose; blake, Judith A.; Bult, Carol; Diehl, Alexander D.; Dolan, Mary; Drabkin, Harold; Eppig, Janan T.; Hill, David P.; Ni, Li; Ringwald, Martin; Sitnikov, Dmitry; Collmer, Candace; Torto-Alalibo, Trudy; Laulederkind, Stan; Shimoyama, Mary; Twigger, Simon; D\'Eustachio, Peter; Matthews, Lisa; Balakrishnan, Rama; Binkley, Gail; Cherry, J. Michael; Christie, Karen R.; Costanzo, Maria C.; Engel, Stacia R.; Fisk, Dianna, G.; Hirschman, Jodi E.; Hitz, Benjamin C.; Hong, Eurie L.; Krieger, Cynthia J.; Miyasato, Stuart R.; Nash, Robert S.; Park, Julie; Skrzypek, Marek, S.; Weng, Shuai; Wong, Edith D.; Aslett, martin; Chan, Juancarlos; Kishore, Ranjana; Sternberg, Paul; Van Auken, Kimberly; Khodiyar, Varsha K.; Lovering, Ruth C.; Talmud, Philippa J.; Howe, Doug; Westerfield, Monte (2010) The Gene Ontology in 2010: extensions and refinements. Nucleic Acids Res. 38 (suppl 1) D331-D335.
  • Apweiler, Rolf; Jesus Martin, Maria; O\'Donovan, Claire; Magrane, Michele; Alam-Faruque, Yasmin; Antunes, Ricardo; Barrell, Daniel; Bely, Benoit; Bingley, Mark; Binns, David; Bower, Lawrence; Browne, Paul; Chan, Wei Mun; Dimmer, Emily; Eberhardt, Ruth; Fedotov, Alexander; Foulger, Rebecca; Garavelli, John; Huntley, Rachael; Jacobsen, Julius; Kleen, Michael; Laiho, Kati; Leinonen, Rasko; Legge, Duncan; Lin, Quan; Liu, Wudong; Luo, Jie; Orchard, Sandra; Patient, Samuel; Poggioli, Diego; Pruess, Manuela; Corbett, Matt; di Martino, Giuseppe; Donnelly, Mike; van Rensburg, Pieter; Bairoch, Amos; Bougueleret, Lydie; Xenarios, Ioannis; Altairac, Severine; Auchincloss, Andrea; Argoud-Puy, Ghislaine; Axelsen, Kristian; Baratin, Delphine; Blatter, Marie-Claude; Boeckmann, Brigitte; Bolleman, Jerven; Bollondi, Laurent; Boutet, Emmanuel; Quintaje, Silvia Braconi; Breuza, Lionel; Bridge, Alan; deCastro, Edouard; Ciapina, Luciane; Coral, Danielle; Coudert, Elisabeth; Cusin, isabelle; Delbard, Gwennaelle; Doche, Mikael; Dornevil, Dolnide; Roggli, Paula Duek; Duvaud, Severine; Estreicher, Anne; Famiglietti, Livia; Feuermann, Marc; Gehant, Sebastien; Farriol-Mathis, Natalie; Ferro, Serenella; Gasteiger, Elisabeth; Gateau, Alain; Gerritsen, Vivienne; Gos, Arnaud; Gruaz-Gumowski, Nadine; Hinz, Ursula; Hula, Chantal; Hulo, Nicolas; James, Janet; Jimenez, Silvia; Jungo, Florence; Kappler, thomas; Keller, Guillaume; Lachaize, Corinne; Lane-Guermonprez, Lydie; Langendijk-Genevauz, Petra; Lara, Vicente; Lemercier, Philippe; Lieberherr, Damien; de Oliveira Lima, Tania; Mangold, Veronique; Martin, Xavier; Masson, Patrick; Moinat, Madelaine; Morgat, Anne; Mottaz, Anais; Paesano, Salvo; Pedruzzi, ivo; Pilbout, Sandrine; Pillet, Violaine; Poux, Sylvain; Pozzato, Monica; Redaschi, Nicole; Rivoire, Catherine; Roechert, Bernd; Schneider, Michel; Sigrist, Christian; Sonesson, Karin; Staehli, Sylvie; Stanley, Eleanor; Stutz, Andre; Sundaram, Shyamala; Tognolli, Michael; Verbregue, Laure; Veuthey, Anne-Lise; Yip, Lina; Zuletta, Laure; Wu, Cathy; Arighi, Cecilia; Arminski, Leslie; Barker, Winona; Chen, Chuming; Chen, Yongxing; Hu, Zhang-Zhi; Huang, Hongzhan; Mazumder, Raja; McGarvey, Peter; Natale, Darren A.; Nchoutmboube, Jules; Petrova, Natalia; Subramanian, Nisha; Suzek, Baris E.; Ugochukwu, Uzoamaka; Vasudevan, Sona; Vinayaka, C. R.; Yeh, Lai Su; Zhang, Jian (2010) The Universal Protein Resource (UniProt) in 2010. Nucleic Acids Res. 38 (suppl 1) D142-D148.